Journal of Molecular Histology最新文献

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Bioinformatics proved the existence of potential hub genes activating autophagy to participate in cartilage degeneration in osteonecrosis of the femoral head 生物信息学证明,股骨头坏死中存在激活自噬的潜在枢纽基因,参与软骨变性。
IF 2.9 4区 生物学
Journal of Molecular Histology Pub Date : 2024-05-17 DOI: 10.1007/s10735-024-10200-w
Yingkang Zhu, Xianxuan Wang, Ruiyu Liu
{"title":"Bioinformatics proved the existence of potential hub genes activating autophagy to participate in cartilage degeneration in osteonecrosis of the femoral head","authors":"Yingkang Zhu,&nbsp;Xianxuan Wang,&nbsp;Ruiyu Liu","doi":"10.1007/s10735-024-10200-w","DOIUrl":"10.1007/s10735-024-10200-w","url":null,"abstract":"<div><p>The obvious degeneration of articular cartilage occurs in the late stage of osteonecrosis of the femoral head (ONFH), which aggravates the condition of ONFH. This study aimed to demonstrate aberrant activation of autophagy processes in ONFH chondrocytes through bioinformatics and to predict and identify relevant hub genes and pathways. Differentially expressed genes (DEGs) were identified using R software in the GSE74089 dataset from the GEO database. DEGs were crossed with the Human Autophagy Database (HADb) autophagy genes to screen out autophagy-related differential genes (AT-DEGs). GSEA, GSVA, GO, and KEGG pathway enrichment analyses of AT-DEGs were performed. The STRING database was used to analyze the protein-protein interaction (PPI) of the AT-DEGs network, and the MCODE and CytoHubba plugin in the Cytoscape software was used to analyze the key gene cluster module and screen the hub genes. The PPI network of hub genes was constructed using the GeneMANIA database, and functional enrichment and gene connectivity categories were analyzed. The expression levels of hub genes of related genes in the ONFH patients were verified in the dataset GSE123568, and the protein expression was verified by immunohistochemistry in tissues. The analysis of DEGs revealed abnormal autophagy in ONFH cartilage. AT-DEGs in ONFH have special enrichment in macroautophagy, autophagosome membrane, and phosphatidylinositol-3-phosphate binding. In the GSE123568 dataset, it was also found that ATG2B, ATG4B, and UVRAG were all significantly upregulated in ONFH patients. By immunohistochemistry, it was verified that ATG2B, ATG4B, and UVRAG were significantly overexpressed. These three genes regulate the occurrence and extension of autophagosomes through the PI3KC3C pathway. Finally, we determined that chondrocytes in ONFH undergo positive regulation of autophagy through the corresponding pathways involved in three genes: ATG2B, ATG4B, and UVRAG.</p></div>","PeriodicalId":650,"journal":{"name":"Journal of Molecular Histology","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2024-05-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140955416","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Design and application of Cd2+ polypeptide fluorescent probes based on Aggregation Induced Emission (AIE) 基于聚集诱导发射(AIE)的 Cd2+ 多肽荧光探针的设计与应用。
IF 2.9 4区 生物学
Journal of Molecular Histology Pub Date : 2024-05-17 DOI: 10.1007/s10735-024-10201-9
Jiang Zhou, Xuejiao Wang, Dajiang Wang, Liangchao Yuan, Junlei Hao, Jingcheng Hou, Jiang Wu, Pengcheng Lin
{"title":"Design and application of Cd2+ polypeptide fluorescent probes based on Aggregation Induced Emission (AIE)","authors":"Jiang Zhou,&nbsp;Xuejiao Wang,&nbsp;Dajiang Wang,&nbsp;Liangchao Yuan,&nbsp;Junlei Hao,&nbsp;Jingcheng Hou,&nbsp;Jiang Wu,&nbsp;Pengcheng Lin","doi":"10.1007/s10735-024-10201-9","DOIUrl":"10.1007/s10735-024-10201-9","url":null,"abstract":"<div><p>Cadmium is a toxic heavy metal, which is both an environmental pollutant, and a threat to human health. A fluorescent probe was developed to detect Cd<sup>2+</sup> selectively, sensitively, and quickly. This study reports the successful development of a polypeptide fluorescent probe TPE-HC (TPE-His-Pro-Gly-Cys) which selectively detects Cd<sup>2+</sup> by Aggregation-Induced Emission effect. After fluorescence excitation, Cd<sup>2+</sup> can be effectively detected based on the change of fluorescence intensity. The detection limit of Cd<sup>2+</sup> in buffer solution was determined to be 151 nM (R<sup>2</sup> = 0.9933). This probe exhibits high sensitivity, high cell permeabilit y, and low biological toxicity, and can perform live cell imaging under biological conditions. This study indicates that TPE-HC can detect Cd<sup>2+</sup> in biological environments.</p></div>","PeriodicalId":650,"journal":{"name":"Journal of Molecular Histology","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2024-05-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140955530","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Prenatal aripiprazole induces alterations of rat placenta: a histological, immunohistochemical and ultrastructural study 产前阿立哌唑诱导大鼠胎盘的改变:组织学、免疫组织化学和超微结构研究。
IF 2.9 4区 生物学
Journal of Molecular Histology Pub Date : 2024-05-07 DOI: 10.1007/s10735-024-10199-0
Manal A. Othman, Mariwan Husni, Wael Amin Nasr El-Din, Abdel-Halim Salem, Nasir Sarwani, Aisha Rashid, Raouf Fadel
{"title":"Prenatal aripiprazole induces alterations of rat placenta: a histological, immunohistochemical and ultrastructural study","authors":"Manal A. Othman,&nbsp;Mariwan Husni,&nbsp;Wael Amin Nasr El-Din,&nbsp;Abdel-Halim Salem,&nbsp;Nasir Sarwani,&nbsp;Aisha Rashid,&nbsp;Raouf Fadel","doi":"10.1007/s10735-024-10199-0","DOIUrl":"10.1007/s10735-024-10199-0","url":null,"abstract":"<div><p>Antipsychotic drugs (APDs) are used to treat many psychiatric illnesses as schizophrenia. Typical antipsychotic drugs (TAPDs) are being used; however, they have many side effects. Atypical antipsychotic drugs (AAPDs) are newer medications with known fewer side effects. Aripiprazole (ARI) is an AAPD, recommended by healthcare providers, even during pregnancy. It can cross the placental barrier and enter fetal circulation, so it might be possible that ARI can adversely impair normal placental development and growth, if it is given prenatally. ARI was applied orally to pregnant female rats in two doses (3&amp; 6 mg/kg body weight). On gestation day 20, the mothers were sacrificed, and the placentas were removed and processed for general histological and electron microscopic evaluations. Immunohistochemistry was done using anti-PCNA (proliferating cell nuclear antigen), anti-Bax (for apoptosis) and anti-vascular endothelial growth factor alpha (VEGFA). Morphological evaluation revealed degenerative changes in the placenta as dark nuclei, vacuolization, and cyst formation. Ultra-structurally, there was degeneration of cellular components including organelles and nuclei. These changes were found in different cells of the basal and labyrinth zones and were dose dependent. Immunohistochemistry revealed upregulation of Bax and VEGFA and downregulation of PCNA. Prenatal administration of the AAPD, ARI to pregnant female rats resulted in histological changes in the placenta. Additionally, there was a decrease in cellular proliferation and increase in apoptosis, and vascular impairment. This indicates placental atrophy and dysgenesis and might suggest possible teratogenic effects to ARI, which needs further evaluation.</p></div>","PeriodicalId":650,"journal":{"name":"Journal of Molecular Histology","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2024-05-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140849755","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Content and tissue expression of Collagen I, Collagen IV, and Laminin in the Extracellular Matrix in Prostate Adenocarcinoma 前列腺癌细胞外基质中胶原蛋白 I、胶原蛋白 IV 和层粘连蛋白的含量和组织表达。
IF 2.9 4区 生物学
Journal of Molecular Histology Pub Date : 2024-05-04 DOI: 10.1007/s10735-024-10196-3
Igor Arantes Góes, Maria Roberta Martins Pereira, Enrico Crotti, Geovanna Paciulli Pereira, Mateus Magami Yoshitani, Marcos Antonio Castro, Jose Aires Pereira, Carlos Augusto Real Martinez
{"title":"Content and tissue expression of Collagen I, Collagen IV, and Laminin in the Extracellular Matrix in Prostate Adenocarcinoma","authors":"Igor Arantes Góes,&nbsp;Maria Roberta Martins Pereira,&nbsp;Enrico Crotti,&nbsp;Geovanna Paciulli Pereira,&nbsp;Mateus Magami Yoshitani,&nbsp;Marcos Antonio Castro,&nbsp;Jose Aires Pereira,&nbsp;Carlos Augusto Real Martinez","doi":"10.1007/s10735-024-10196-3","DOIUrl":"10.1007/s10735-024-10196-3","url":null,"abstract":"<div><p>Prostate cancer is one of the most common neoplasm in the male population. It is not known why some tumors become more aggressive than others. Although most studies show changes in the expression of cell adhesion molecules and the extracellular matrix correlated with the Gleason score, no study has objectively measured the tissue content of these molecules. This study aims to measure the content and tissue expression of collagen type I and IV and laminin in the extracellular matrix of patients with prostate adenocarcinoma and correlate these findings with the Gleason score and clinical characteristics. Forty-one patients who underwent radical prostate surgery at the Urology Department of a reference Hospital in Brazil between January 2015 and December 2020 were studied. The tissue protein content was estimated under light microscopy at a final magnification of 200 × . The mean collagen I score in prostate adenocarcinoma tissue samples was 7.16 ± 1.03 pixels/field. The mean type IV collagen score was 3.44 ± 0.61 pixels/field. The mean laminin score was 5.19 ± 0.79 pixels/field. The total Gleason score was correlated with both collagen and laminin. All the correlations were negative, which shows that the higher the collagen/laminin expression was, the lower the total Gleason score (<i>p</i>-value &lt; 0,05). According to the Pearson correlation analysis, age has no statistical relationship with collagen and laminin content. PSA, in turn, showed a correlation only with laminin, but r = -0.378 (<i>p</i> = 0.015). Among the associated diseases and lifestyle habits, there is only statistical significance in the comparison of alcoholism for collagen I. For collagen IV and laminin, no statistical significance was obtained with the clinical variables analyzed.</p></div>","PeriodicalId":650,"journal":{"name":"Journal of Molecular Histology","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2024-05-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140849788","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
An overview on liposarcoma subtypes: Genetic alterations and recent advances in therapeutic strategies 脂肪肉瘤亚型概述:基因改变和治疗策略的最新进展。
IF 2.9 4区 生物学
Journal of Molecular Histology Pub Date : 2024-05-02 DOI: 10.1007/s10735-024-10195-4
Anju M.S, Chandramohan K, Rexeena V. Bhargavan, Thara Somanathan, Lakshmi Subhadradevi
{"title":"An overview on liposarcoma subtypes: Genetic alterations and recent advances in therapeutic strategies","authors":"Anju M.S,&nbsp;Chandramohan K,&nbsp;Rexeena V. Bhargavan,&nbsp;Thara Somanathan,&nbsp;Lakshmi Subhadradevi","doi":"10.1007/s10735-024-10195-4","DOIUrl":"10.1007/s10735-024-10195-4","url":null,"abstract":"<div><p>Liposarcoma (LPS) is a rare malignancy of adipocytic differentiation. According to World Health Organization classification, LPS comprises of four principle subtypes Atypical lipomatous tumor/Well-differentiated liposarcoma (ATL/WDLPS), Dedifferentiated liposarcoma (WDLPS), Myxoid liposarcoma (MLPS), and Pleomorphic liposarcoma (PLPS). Each subtype can develop at any location and shows distinct clinical behavior and treatment sensitivity. ATL/ WDLPS subtype has a higher incidence rate, low recurrence, and is insensitive to radiation and chemotherapy. DDLPS is the focal progression of WDLPS, which is aggressive and highly metastasizing. MLPS is sensitive to radiation and chemotherapy, with a higher recurrence rate and metastasis. PLPS subtype is highly metastasizing, has a poor prognosis, and exhibiting higher recurrence rate. Initial histological analysis provides information for the characterization of LPS subtypes’, further molecular and genetic analysis provides certain subtype specifications, such as gene amplifications and gene fusions. Such molecular genetic alterations will be useful as therapeutic targets in various cancers, including the LPS subtypes. A wide range of novel therapeutic agents based on genetic alterations that aim to target LPS subtypes specifically are under investigation. This review summarizes the LPS subtype classification, their molecular genetic characteristics, and the implications of genetic alterations in therapeutics.</p></div>","PeriodicalId":650,"journal":{"name":"Journal of Molecular Histology","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2024-05-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140849754","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
miR-199a-5p modulates choroidal neovascularization by regulating Wnt7b/Wnt/β-catenin signaling pathway miR-199a-5p 通过调控 Wnt7b/Wnt/β-catenin 信号通路调节脉络膜新生血管。
IF 2.9 4区 生物学
Journal of Molecular Histology Pub Date : 2024-04-25 DOI: 10.1007/s10735-024-10194-5
Yu Geng, HaiRong Hua, Yuan Xia, Jie Zhou, Jian He, XingYu Xu, JianFeng Zhao
{"title":"miR-199a-5p modulates choroidal neovascularization by regulating Wnt7b/Wnt/β-catenin signaling pathway","authors":"Yu Geng,&nbsp;HaiRong Hua,&nbsp;Yuan Xia,&nbsp;Jie Zhou,&nbsp;Jian He,&nbsp;XingYu Xu,&nbsp;JianFeng Zhao","doi":"10.1007/s10735-024-10194-5","DOIUrl":"10.1007/s10735-024-10194-5","url":null,"abstract":"<div><p>Choroidal neovascularization (CNV) can be seen in many fundus diseases, and lead to fundus exudation, bleeding, or vision loss. miRNAs are vital regulator in CNV. miR-199a-5p has been proved to be involved in regulating vascular formation of endothelial cells, but its role in CNV remains unclear. This study aims to study the role of miR-199a-5p in CNV. Laser irradiation was used to induce CNV model. The lesion area of CNV was calculated by high-resolution angiography with fluorescein isothiocyanate-dextran. Wnt family member 7b (Wnt7b), β-catenin, and Wnt pathway proteins was measured by western blot. Immunofluorescence was performed to test Wnt7b, β-catenin, CD31, and p-p65. miR-199a-5p and Wnt7b mRNA were tested by reverse transcription real-time polymerase chain reaction. Cell count kit-8, wound healing, Transwell, tube formation, and flow cytometry were used to detect the function of miR-199a-5p and Wnt7b on human retinal microvascular endothelial cells (HRMEC). TargetScan database and dual-luciferase reporter assay verified the interaction between miR-199a-5p and Wnt7b. The results revealed that Wnt7b increased in CNV rats. Knocking down Wnt7b repressed cell proliferation, migration, invasion, and angiogenesis, and accelerated cell apoptosis of HRMEC. Dual-luciferase reporter assay verified that miR-199a-5p targeted Wnt7b. Overexpression of miR-199a-5p inhibited the angiogenesis of HRMEC and promoted cell apoptosis by inhibiting Wbt7b. In vivo experiment found that Wnt7b rescued the promotion of miR-199a-5p inhibition on CNV lesion of rats. In addition, Wnt7b positively regulated Wnt/β-catenin signaling pathway and promoted the angiogenesis of HRMEC. In conclusion, overexpression of miR-199a-5p inhibited the angiogenesis of HRMEC by regulating Wnt7b/Wnt/β-catenin signaling pathway, which may serve as a promising therapy target of CNV.</p></div>","PeriodicalId":650,"journal":{"name":"Journal of Molecular Histology","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2024-04-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140656747","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Evaluation of histological and ultrastructural changes provoked by prenatal tramadol on postnatal cortical cerebellar neuronal development in rats: possible implication of Ki67, GFAP and MicroRNA-7/P53 signalling trajectories 评估产前曲马多引起的组织学和超微结构变化对大鼠出生后大脑皮层小脑神经元发育的影响:Ki67、GFAP 和 MicroRNA-7/P53 信号传导轨迹的可能影响
IF 2.9 4区 生物学
Journal of Molecular Histology Pub Date : 2024-04-19 DOI: 10.1007/s10735-024-10189-2
Walaa Adel Abdelmoez
{"title":"Evaluation of histological and ultrastructural changes provoked by prenatal tramadol on postnatal cortical cerebellar neuronal development in rats: possible implication of Ki67, GFAP and MicroRNA-7/P53 signalling trajectories","authors":"Walaa Adel Abdelmoez","doi":"10.1007/s10735-024-10189-2","DOIUrl":"10.1007/s10735-024-10189-2","url":null,"abstract":"<div><p>Tramadol is a novel centrally acting analgesic. Despite, its implementation during pregnancy may impair neuronal survival and synaptic development in neonatal cerebella. The current investigation assessed the histological and ultrastructural alterations in postnatal cortical cerebellar neuronal development induced by prenatal tramadol. 30 offsprings were divided to <b>control group I:</b> fifteen pups born to mothers given saline from D10 till D21 of gestation. <b>Tramadol-treated group II</b>: fifteen pups born to mothers received tramadol HCL (50 mg/kg/day) from D10 till D21 of gestation. Pups were categorized into three subgroups (a, b, and c) and offered for sacrifice on the seventh, fourteenth and twenty-first post-natal days. Light microscopic examination revealed the overcrowding and signs of red degeneration affecting purkinje cell layer. Neurodegenerative signs of both purkinje and granule cell neurons were also confirmed by TEM in form of chromatin condensation, dilated Golgi channels, disrupted endoplasmic reticulum, marked infolding of the nuclear envelope and decrease in granule cell precursors. In addition, the astrocytic processes and terminal nerve axons appeared with different degrees of demyelination and decreased number of oligodendrocytes and degenerated mitochondria. Furthermore, group II exhibited an increase in P53 immune expression. The area percentage of apoptotic cells detected by TUNEL assay was significantly increased. Besides to the significant decrease of Ki67 immunoreactivity in the stem neuronal cell progenitors. Quantitative PCR results showed a significant decline in micro RNA7 gene expression in tramadol treated groups resulting in affection of multiple target genes in P53 signaling pathways, improper cortical size and defect in neuronal development.</p></div>","PeriodicalId":650,"journal":{"name":"Journal of Molecular Histology","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2024-04-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1007/s10735-024-10189-2.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140627288","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Expression of LC3A, LC3B and p62/SQSTM1 autophagy proteins in hepatocellular carcinoma (HCC) tissues and the predicted microRNAs involved in the autophagy-related pathway 肝细胞癌(HCC)组织中 LC3A、LC3B 和 p62/SQSTM1 自噬蛋白的表达以及参与自噬相关途径的预测 microRNAs
IF 2.9 4区 生物学
Journal of Molecular Histology Pub Date : 2024-04-17 DOI: 10.1007/s10735-024-10191-8
Magdelyn Mei-Theng Wong, Norazlin Abdul Aziz, Ewe Seng Ch’ng, Subasri Armon, Jack-Bee Chook, Jan-Jin Bong, Suat-Cheng Peh, Yuan Seng Wu, Sin-Yeang Teow
{"title":"Expression of LC3A, LC3B and p62/SQSTM1 autophagy proteins in hepatocellular carcinoma (HCC) tissues and the predicted microRNAs involved in the autophagy-related pathway","authors":"Magdelyn Mei-Theng Wong,&nbsp;Norazlin Abdul Aziz,&nbsp;Ewe Seng Ch’ng,&nbsp;Subasri Armon,&nbsp;Jack-Bee Chook,&nbsp;Jan-Jin Bong,&nbsp;Suat-Cheng Peh,&nbsp;Yuan Seng Wu,&nbsp;Sin-Yeang Teow","doi":"10.1007/s10735-024-10191-8","DOIUrl":"10.1007/s10735-024-10191-8","url":null,"abstract":"<div><h3>Background</h3><p>Autophagy plays multifaceted roles in regulating hepatocellular carcinoma (HCC) and the mechanisms involved are under-explored. Regulatory microRNAs (miRNAs) have been reported to target autophagy proteins but their roles in HCC is not well studied. Using HCC patient tissues, this study aims to investigate the association of autophagy with several clinicopathological parameters as well as identifying the autophagy-related miRNAs and the possible pathways.</p><h3>Methods and results</h3><p>Autophagy level in the HCC patient-derived cancer and non-cancer tissues was determined by immunohistochemistry (IHC) targeting SQSTM1, LC3A and LC3B proteins. Significance tests of clinicopathological variables were tested using the Fisher’s exact or Chi-square tests. Gene and miRNA expression assays were carried out and analyzed using Nanostring platform and software followed by validation of other online bioinformatics tools, namely String and miRabel. Autophagy expression was significantly higher in cancerous tissues compared to adjacent non-cancer tissues. High LC3B expression was associated with advanced tumor histology grade and tumor location. Nanostring gene expression analysis revealed that SQSTM1, PARP1 and ATG9A genes were upregulated in HCC tissues compared to non-cancer tissues while SIRT1 gene was downregulated. These genes are closely related to an autophagy pathway in HCC. Further, using miRabel tool, three downregulated miRNAs (hsa-miR-16b-5p, hsa-miR-34a-5p, and hsa-miR-660-5p) and one upregulated miRNA (hsa-miR-539-5p) were found to closely interact with the abovementioned autophagy-related genes. We then mapped out the possible pathway involving the genes and miRNAs in HCC tissues.</p><h3>Conclusions</h3><p>We conclude that autophagy events are more active in HCC tissues compared to the adjacent non-cancer tissues. We also reported the possible role of several miRNAs in regulating autophagy-related genes in the autophagy pathway in HCC. This may contribute to the development of potential therapeutic targets for improving HCC therapy. Future investigations are warranted to validate the target genes reported in this study using a larger sample size and more targeted molecular technique.</p></div>","PeriodicalId":650,"journal":{"name":"Journal of Molecular Histology","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2024-04-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140608462","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Subcellular expression of MTA1, HIF1A and p53 in primary tumor predicts aggressive triple negative breast cancers: a meta-analysis based study 原发性肿瘤中 MTA1、HIF1A 和 p53 的亚细胞表达可预测侵袭性三阴性乳腺癌:一项基于荟萃分析的研究
IF 2.9 4区 生物学
Journal of Molecular Histology Pub Date : 2024-04-13 DOI: 10.1007/s10735-024-10190-9
Shanaz S Sharaf, K M Jaganath Krishna, Asha Lekshmi,  Sujathan
{"title":"Subcellular expression of MTA1, HIF1A and p53 in primary tumor predicts aggressive triple negative breast cancers: a meta-analysis based study","authors":"Shanaz S Sharaf,&nbsp;K M Jaganath Krishna,&nbsp;Asha Lekshmi,&nbsp; Sujathan","doi":"10.1007/s10735-024-10190-9","DOIUrl":"10.1007/s10735-024-10190-9","url":null,"abstract":"<div><h3>Background</h3><p>The prevalence of TNBC in India is higher compared to western countries. There is a multitude of biomarkers associated with different clinical outcomes of TNBC with contradictory reports. Identification of a set of specific biomarkers from the very many number of proteins reported in the literature to predict prognosis of TNBC is an urgent clinical need.</p><h3>Methodology</h3><p>A systematic review of key molecular biomarkers in cohort studies that have been investigated for their role in breast cancer prognosis was conducted. The Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) methodology was followed. A meta-analysis was used to evaluate their pooled hazard ratio (HR) and the corresponding 95% confidence interval (95% CI) statistically. Immunohistochemical characterization of the meta-analyzed markers were performed in a cohort of 200 retrospective TNBC and 100 non TNBC patient tissues. Kaplan–Meier plot were used to evaluate disease free survival (DFS), and overall survival (OS). Cox regression models were used to evaluate predictors of DFS and OS.</p><h3>Results</h3><p>Using a meta-analytical approach, we consolidated the biomarker signatures associated with survival outcomes in breast cancers. The promising markers that emerged for the prediction of DFS and OS included E-Cadherin, Survivin, p53, MTA1, HIF1A, CD133, Vimentin and CK5/6. Evaluation of these markers in tumor tissue revealed that subcellular localization of p53, MTA1 and HIF1A had a significant association in predicting TNBC prognosis. Kaplan Meier plot revealed that p53 (OS <i>p</i> = 0.007, DFS <i>p</i> = 0.004), HIF 1 A (OS <i>p</i> = 0.054, DFS <i>p</i> = 0.009) and MTA1 (OS <i>p</i> = 0.043, DFS = <i>p</i> = 0.001) expression in the primary tumor tissue were found to be significantly correlated with poor OS and DFS, whereas expression of Survivin (DFS <i>p</i> = 0.024) and E Cadherin (DFS <i>p</i> = 0.027) correlated with DFS alone in TNBC. Univariate analysis revealed that p53, HIF1A and MTA1 could be independent prognostic markers.</p><h3>Conclusion</h3><p>Our study suggests cytoplasmic over expression of HIF1A, nuclear over expression of MTA1 and mutated p53 in the primary tumor tissue of TNBC have significance as markers predicting survival of TNBC patients.</p></div>","PeriodicalId":650,"journal":{"name":"Journal of Molecular Histology","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2024-04-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140560416","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Germ cell-specific gene 2 accelerates cell cycle in epithelial ovarian cancer by inhibiting GSK3α-p27 cascade 生殖细胞特异基因 2 通过抑制 GSK3α-p27 级联加速上皮性卵巢癌的细胞周期
IF 2.9 4区 生物学
Journal of Molecular Histology Pub Date : 2024-04-13 DOI: 10.1007/s10735-024-10185-6
Keyu Zhu, Xiaolu Ma, Xiaolin Guan, Ying Tong, Suhong Xie, Yanchun Wang, Hui Zheng, Lin Guo, Renquan Lu
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