园艺研究(英文)最新文献_第2页

A multiplex microfluidic device to detect miRNAs for diagnosis of plant growth status. 一种用于诊断植物生长状态的多重微流控装置检测mirna。

IF 7.6

园艺研究(英文) Pub Date : 2024-11-26 eCollection Date: 2025-03-01 DOI: 10.1093/hr/uhae323

Yaichi Kawakatsu, Mitsuo Hara, Ken-Ichi Kurotani, Akihide Arima, Yoshinobu Baba, Michitaka Notaguchi

引用次数: 0

Tonoplast sugar transporters as key drivers of sugar accumulation, a case study in sugarcane. 糖质体糖转运体是甘蔗糖积累的关键驱动因素。

IF 7.6

园艺研究(英文) Pub Date : 2024-11-06 eCollection Date: 2025-02-01 DOI: 10.1093/hr/uhae312

Michael Tang, Jiang Wang, Baskaran Kannan, Niki Maria Koukoulidis, Yi-Hsuan Lin, Fredy Altpeter, Li-Qing Chen

引用次数: 0

Ectopic biosynthesis of catechin of tea plant can be completed by co-expression of the three CsANS, CsLAR, and CsANR genes. 茶树儿茶素的异位生物合成可以通过cans、CsLAR和CsANR三个基因的共同表达来完成。

IF 7.6

园艺研究(英文) Pub Date : 2024-10-30 eCollection Date: 2025-02-01 DOI: 10.1093/hr/uhae304

Ni Yang, Jing-Wen Li, Yuan-Jie Deng, Rui-Min Teng, Wei Luo, Gui-Nan Li, Zhi-Hang Hu, Hui Liu, Ai-Sheng Xiong, Jian Zhang, Quan-Hong Yao, Jing Zhuang

引用次数: 0

GenoBaits Cassava35K: high-resolution multi-SNP arrays for genetic analysis and molecular breeding using targeted sequencing and liquid chip technology. GenoBaits Cassava35K：高分辨率多snp阵列，用于遗传分析和分子育种，使用靶向测序和液体芯片技术。

IF 7.6

园艺研究(英文) Pub Date : 2024-10-24 eCollection Date: 2025-02-01 DOI: 10.1093/hr/uhae305

Chaochao Li, Xiaoxue Ye, Zhongxin Jin, Kaisen Huo, Jiangxiang Ma, Weiwei Tie, Zehong Ding, Yongfeng Zhou, Wei Hu

引用次数: 0

Disruption of ClOSD1 leads to both somatic and gametic ploidy doubling in watermelon. ClOSD1的破坏导致西瓜体细胞倍性和配子倍性加倍。

IF 7.6

园艺研究(英文) Pub Date : 2024-10-15 eCollection Date: 2025-01-01 DOI: 10.1093/hr/uhae288

Wenyu Pang, Wenbing He, Jing Liang, Qiaran Wang, Shengcan Hou, Xiaodan Luo, Junhua Li, Jiafa Wang, Shujuan Tian, Li Yuan

引用次数: 0

Revisiting the role of light signaling in plant responses to salt stress. 重新审视光信号在植物对盐胁迫反应中的作用。

IF 7.6

园艺研究(英文) Pub Date : 2024-09-16 eCollection Date: 2025-01-01 DOI: 10.1093/hr/uhae262

Yinxia Peng, Haiyan Zhu, Yiting Wang, Jin Kang, Lixia Hu, Ling Li, Kangyou Zhu, Jiarong Yan, Xin Bu, Xiujie Wang, Ying Zhang, Xin Sun, Golam Jalal Ahammed, Chao Jiang, Sida Meng, Yufeng Liu, Zhouping Sun, Mingfang Qi, Tianlai Li, Feng Wang

{"title":"Revisiting the role of light signaling in plant responses to salt stress.","authors":"Yinxia Peng, Haiyan Zhu, Yiting Wang, Jin Kang, Lixia Hu, Ling Li, Kangyou Zhu, Jiarong Yan, Xin Bu, Xiujie Wang, Ying Zhang, Xin Sun, Golam Jalal Ahammed, Chao Jiang, Sida Meng, Yufeng Liu, Zhouping Sun, Mingfang Qi, Tianlai Li, Feng Wang","doi":"10.1093/hr/uhae262","DOIUrl":"10.1093/hr/uhae262","url":null,"abstract":"As one of the grave environmental hazards, soil salinization seriously limits crop productivity, growth, and development. When plants are exposed to salt stress, they suffer a sequence of damage mainly caused by osmotic stress, ion toxicity, and subsequently oxidative stress. As sessile organisms, plants have developed many physiological and biochemical strategies to mitigate the impact of salt stress. These strategies include altering root development direction, shortening the life cycle, accelerating dormancy, closing stomata to reduce transpiration, and decreasing biomass. Apart from being a prime energy source, light is an environmental signal that profoundly influences plant growth and development and also participates in plants' response to salt stress. This review summarizes the regulatory network of salt tolerance by light signals in plants, which is vital to further understanding plants' adaptation to high salinity. In addition, the review highlights potential future uses of genetic engineering and light supplement technology by light-emitting diode (LED) to improve crop growth in saline-alkali environments in order to make full use of the vast saline land.","PeriodicalId":57479,"journal":{"name":"园艺研究(英文)","volume":"12 1","pages":"uhae262"},"PeriodicalIF":7.6,"publicationDate":"2024-09-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11718397/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142973501","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Decoding the genetic basis of secretory tissues in plants. 破译植物分泌组织的遗传基础。

IF 7.6

园艺研究(英文) Pub Date : 2024-09-16 eCollection Date: 2025-01-01 DOI: 10.1093/hr/uhae263

Yuepeng Han

引用次数: 0

Genome-wide mapping of main histone modifications and coordination regulation of metabolic genes under salt stress in pea (Pisum sativum L). 盐胁迫下豌豆（Pisum sativum L）主要组蛋白修饰的全基因组定位及代谢基因的协调调控

IF 7.6

园艺研究(英文) Pub Date : 2024-09-16 eCollection Date: 2024-12-01 DOI: 10.1093/hr/uhae259

Heping Wan, Lan Cao, Ping Wang, Hanbing Hu, Rui Guo, Jingdong Chen, Huixia Zhao, Changli Zeng, Xiaoyun Liu

{"title":"Genome-wide mapping of main histone modifications and coordination regulation of metabolic genes under salt stress in pea (Pisum sativum L).","authors":"Heping Wan, Lan Cao, Ping Wang, Hanbing Hu, Rui Guo, Jingdong Chen, Huixia Zhao, Changli Zeng, Xiaoyun Liu","doi":"10.1093/hr/uhae259","DOIUrl":"10.1093/hr/uhae259","url":null,"abstract":"Pea occupy a key position in modern biogenetics, playing multifaceted roles as food, vegetable, fodder, and green manure. However, due to the complex nature of its genome and the prolonged unveiling of high-quality genetic maps, research into the molecular mechanisms underlying pea development and stress responses has been significantly delayed. Furthermore, the exploration of its epigenetic modification profiles and associated regulatory mechanisms remains uncharted. This research conducted a comprehensive investigation of four specific histone marks, namely H3K4me3, H3K27me3, H3K9ac, and H3K9me2, and the transcriptome in pea under normal conditions, and established a global map of genome-wide regulatory elements, chromatin states, and dynamics based on these major modifications. Our analysis identified epigenomic signals across ~82.6% of the genome. Each modification exhibits distinct enrichment patterns: H3K4me3 is predominantly associated with the gibberellin response pathway, H3K27me3 is primarily associated with auxin and ethylene responses, and H3K9ac is primarily associated with negative regulatory stimulus responses. We also identified a novel bivalent chromatin state (H3K9ac-H3K27me3) in pea, which is related to their development and stress response. Additionally, we unveil that these histone modifications synergistically regulate metabolic-related genes, influencing metabolite production under salt stress conditions. Our findings offer a panoramic view of the major histone modifications in pea, elucidate their interplay, and highlight their transcriptional regulatory roles during salt stress.","PeriodicalId":57479,"journal":{"name":"园艺研究(英文)","volume":"11 12","pages":"uhae259"},"PeriodicalIF":7.6,"publicationDate":"2024-09-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11630261/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142815135","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Genome-wide screen and multi-omics analysis reveal OGT1 participate in the biosynthesis of safflower flavonoid glycosides. 全基因组筛选和多组学分析表明，OGT1参与了红花黄酮类苷的生物合成。

IF 7.6

园艺研究(英文) Pub Date : 2024-09-16 eCollection Date: 2024-12-01 DOI: 10.1093/hr/uhae261

Bin Xian, Yanxun Zhou, Yueying Hu, Yanni Peng, Xiaominting Song, Ziqing Xi, Yuhang Li, Jie Yan, Chaoxiang Ren, Jin Pei, Jiang Chen

{"title":"Genome-wide screen and multi-omics analysis reveal OGT1 participate in the biosynthesis of safflower flavonoid glycosides.","authors":"Bin Xian, Yanxun Zhou, Yueying Hu, Yanni Peng, Xiaominting Song, Ziqing Xi, Yuhang Li, Jie Yan, Chaoxiang Ren, Jin Pei, Jiang Chen","doi":"10.1093/hr/uhae261","DOIUrl":"10.1093/hr/uhae261","url":null,"abstract":"Safflower, an economic crop, is renowned for its flowers, which are widely used in medicines for treating cardiovascular and cerebrovascular diseases and in dyes for food and industry. The utility of safflower depends on its flavonoid glycosides. Therefore, the biosynthesis of safflower flavonoid glycosides has been a focus of attention, but the present mechanisms remain poorly understood. This study aims to identify functional genes associated with flavonoid glycoside biosynthesis in safflower through a comprehensive approach that integrates whole-genome screen and multi-omics correlation studies. CYP and UGT are two crucial genes families involved in flavonoid glycoside biosynthesis. We have screened 264 CYP genes and 140 UGT genes in the genome of safflower and conducted analyzes including phylogenetic relationships, conserved motifs, gene structures, cis-acting elements, and chromosome mapping, which provided extensive and comprehensive data on the CYP and UGT gene families. Integration of phenotype and metabolic data from safflower different tissues helped narrow down the screening by confirming that HSYA is synthesized only in flowers. Based on the gene expression patterns and phylogenetic analysis, CtOGT1 was ultimately identified, which could catalyze the generation of glycosides using various flavonoid substrates and exhibited strong substrate affinity. Moreover, molecular docking studies elucidated CtOGT1's highly active intrinsic mechanism. In conclusion, this study effectively identified genes responsible for flavonoid glycoside biosynthesis in safflower through the integration of whole-genome screen and multi-omics analysis, established a comprehensive foundation of data, methodology, and experimental evidence for further elucidating the pathways of safflower flavonoid glycoside biosynthesis.","PeriodicalId":57479,"journal":{"name":"园艺研究(英文)","volume":"11 12","pages":"uhae261"},"PeriodicalIF":7.6,"publicationDate":"2024-09-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11632156/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142815137","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Integrated genome-wide association and transcriptomic studies reveal genetic architecture of bulb storability of plentiful garlic germplasm resources. 综合全基因组关联和转录组学研究揭示了大量大蒜种质资源球茎贮藏性的遗传结构。

IF 7.6

园艺研究(英文) Pub Date : 2024-09-16 eCollection Date: 2024-12-01 DOI: 10.1093/hr/uhae260

Yue Zhu, Huixia Jia, Jiangping Song, Tingting Zhang, Xiaohui Zhang, Wenlong Yang, Yumin Tan, Mengzhen Wang, Jiyan Zang, Haiping Wang

{"title":"Integrated genome-wide association and transcriptomic studies reveal genetic architecture of bulb storability of plentiful garlic germplasm resources.","authors":"Yue Zhu, Huixia Jia, Jiangping Song, Tingting Zhang, Xiaohui Zhang, Wenlong Yang, Yumin Tan, Mengzhen Wang, Jiyan Zang, Haiping Wang","doi":"10.1093/hr/uhae260","DOIUrl":"10.1093/hr/uhae260","url":null,"abstract":"Garlic is a widely utilized condiment and health product. However, garlic bulbs are prone to quality deterioration resulting in decrease of economic value during postharvest. In this study, the storability of 501 garlic accessions worldwide was evaluated based on the examination of decay index (DI), decay rate, sprouting rate, and bud-to-clove ratio in two consecutive years. The DI was employed as a primary index for evaluating the storability of garlic. Among these garlic, 43 accessions exhibited strong storability with DI of 0%-5%. Phenotypic and cytological observations revealed that strong storability accessions displayed delayed sprouting and decay, a slow rate of nutrient transfer to vascular bundles. Through genome-wide association study (GWAS), 234 single-nucleotide polymorphism loci (SNPs) were associated with the storability, which were located in or near 401 genes, which were annotated the functions of resistance, storage substances transport, etc. A total of 44 genes were screened using selective sweep analysis. Transcriptomic analysis was performed at four periods after storage in the 8N035 accession with strong storability and 8N258 accession with weak storability. Compared with 8N035, the upregulated genes in the 8N258 were enriched in photosynthesis and stress response, whereas the downregulated genes were enriched in response of biotic and abiotic stress and defense response. A co-expression network and GWAS identified three hub genes as key regulatory genes. Conjoint analysis of GWAS, selective sweep, and transcriptomic analysis identified 21 important candidate genes. These findings provided excellent resources with storability and vital candidate genes regulating storability for biological breeding of garlic.","PeriodicalId":57479,"journal":{"name":"园艺研究(英文)","volume":"11 12","pages":"uhae260"},"PeriodicalIF":7.6,"publicationDate":"2024-09-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11630311/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142815154","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0