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Gapless genome assembly and population genomics highlights diversity of mango germplasms. 无间隙基因组组装和群体基因组学突出了芒果种质资源的多样性。
IF 7.6
园艺研究(英文) Pub Date : 2025-04-01 DOI: 10.1093/hr/uhaf007
Cuixian Zhang, Huaifeng Yi, Xiuxu Ye, Jingxiao Fu, Dehong Xie, Tianqi Bai, Xinyue Gong, Zhangguang Ni, Xinping Luo, Yusuf Chong Yu Lok, Qiong Luo, Peng Wang
{"title":"Gapless genome assembly and population genomics highlights diversity of mango germplasms.","authors":"Cuixian Zhang, Huaifeng Yi, Xiuxu Ye, Jingxiao Fu, Dehong Xie, Tianqi Bai, Xinyue Gong, Zhangguang Ni, Xinping Luo, Yusuf Chong Yu Lok, Qiong Luo, Peng Wang","doi":"10.1093/hr/uhaf007","DOIUrl":"10.1093/hr/uhaf007","url":null,"abstract":"","PeriodicalId":57479,"journal":{"name":"园艺研究(英文)","volume":"12 4","pages":"uhaf007"},"PeriodicalIF":7.6,"publicationDate":"2025-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11928152/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143765908","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Correction to: Local and systemic transcriptome and spliceome reprogramming induced by the root-knot nematode Meloidogyne incognita in tomato. 更正：番茄根结线虫（Meloidogyne incognita）诱导的局部和系统转录组和剪接重编程。
IF 7.6
园艺研究(英文) Pub Date : 2025-03-04 eCollection Date: 2025-03-01 DOI: 10.1093/hr/uhaf056
{"title":"Correction to: Local and systemic transcriptome and spliceome reprogramming induced by the root-knot nematode <i>Meloidogyne incognita</i> in tomato.","authors":"","doi":"10.1093/hr/uhaf056","DOIUrl":"https://doi.org/10.1093/hr/uhaf056","url":null,"abstract":"<p><p>[This corrects the article DOI: 10.1093/hr/uhae206.].</p>","PeriodicalId":57479,"journal":{"name":"园艺研究(英文)","volume":"12 3","pages":"uhaf056"},"PeriodicalIF":7.6,"publicationDate":"2025-03-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11890024/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143588535","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Correction to: Potassium stimulates fruit sugar accumulation by increasing carbon flow in Citrus sinensis. 更正：钾通过增加柑橘的碳流刺激果糖积累。
IF 7.6
园艺研究(英文) Pub Date : 2025-03-04 eCollection Date: 2025-03-01 DOI: 10.1093/hr/uhaf057
{"title":"Correction to: Potassium stimulates fruit sugar accumulation by increasing carbon flow in <i>Citrus sinensis</i>.","authors":"","doi":"10.1093/hr/uhaf057","DOIUrl":"10.1093/hr/uhaf057","url":null,"abstract":"<p><p>[This corrects the article DOI: 10.1093/hr/uhae240.].</p>","PeriodicalId":57479,"journal":{"name":"园艺研究(英文)","volume":"12 3","pages":"uhaf057"},"PeriodicalIF":7.6,"publicationDate":"2025-03-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11890026/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143588547","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Correction to: The histone H3K27 demethylase SlJMJ4 promotes dark- and ABA-induced leaf senescence in tomato. 更正：组蛋白H3K27去甲基化酶SlJMJ4促进黑暗和aba诱导的番茄叶片衰老。
IF 7.6
园艺研究(英文) Pub Date : 2025-02-27 eCollection Date: 2025-02-01 DOI: 10.1093/hr/uhaf046
{"title":"Correction to: The histone H3K27 demethylase SlJMJ4 promotes dark- and ABA-induced leaf senescence in tomato.","authors":"","doi":"10.1093/hr/uhaf046","DOIUrl":"https://doi.org/10.1093/hr/uhaf046","url":null,"abstract":"<p><p>[This corrects the article DOI: 10.1093/hr/uhab077.].</p>","PeriodicalId":57479,"journal":{"name":"园艺研究(英文)","volume":"12 2","pages":"uhaf046"},"PeriodicalIF":7.6,"publicationDate":"2025-02-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11878786/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143558990","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Correction to: DgbZIP3 interacts with DgbZIP2 to increase the expression of DgPOD for cold stress tolerance in chrysanthemum. 修正：DgbZIP3与DgbZIP2相互作用，增加DgPOD的表达，提高菊花抗冷胁迫能力。
IF 7.6
园艺研究(英文) Pub Date : 2025-02-24 eCollection Date: 2025-02-01 DOI: 10.1093/hr/uhaf047
{"title":"Correction to: DgbZIP3 interacts with DgbZIP2 to increase the expression of <i>DgPOD</i> for cold stress tolerance in chrysanthemum.","authors":"","doi":"10.1093/hr/uhaf047","DOIUrl":"https://doi.org/10.1093/hr/uhaf047","url":null,"abstract":"<p><p>[This corrects the article DOI: 10.1093/hr/uhac105.].</p>","PeriodicalId":57479,"journal":{"name":"园艺研究(英文)","volume":"12 2","pages":"uhaf047"},"PeriodicalIF":7.6,"publicationDate":"2025-02-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11848036/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143494855","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genomic data uncover complex hybridization and evolutionary history of the bunchberry species complex (Cornus L., Cornaceae). 基因组数据揭示了蔓越莓物种复合体（Cornus L., Cornaceae）的复杂杂交和进化历史。
IF 7.6
园艺研究(英文) Pub Date : 2025-01-22 eCollection Date: 2025-05-01 DOI: 10.1093/hr/uhaf026
Yanxia Sun, Winbin Zhou, Qiu-Yun Jenny Xiang
{"title":"Genomic data uncover complex hybridization and evolutionary history of the bunchberry species complex (<i>Cornus</i> L., Cornaceae).","authors":"Yanxia Sun, Winbin Zhou, Qiu-Yun Jenny Xiang","doi":"10.1093/hr/uhaf026","DOIUrl":"https://doi.org/10.1093/hr/uhaf026","url":null,"abstract":"","PeriodicalId":57479,"journal":{"name":"园艺研究(英文)","volume":"12 5","pages":"uhaf026"},"PeriodicalIF":7.6,"publicationDate":"2025-01-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12077139/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144082354","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The whole-genome dissection of root system architecture provides new insights for the genetic improvement of alfalfa (Medicago sativa L.). 根系结构的全基因组剖析为紫花苜蓿（Medicago sativa L.）的遗传改良提供了新的见解。
IF 7.6
园艺研究(英文) Pub Date : 2025-01-11 eCollection Date: 2025-01-01 DOI: 10.1093/hr/uhae271
Xueqian Jiang, Xiangcui Zeng, Ming Xu, Mingna Li, Fan Zhang, Fei He, Tianhui Yang, Chuan Wang, Ting Gao, Ruicai Long, Qingchuan Yang, Junmei Kang
{"title":"The whole-genome dissection of root system architecture provides new insights for the genetic improvement of alfalfa (<i>Medicago sativa</i> L.).","authors":"Xueqian Jiang, Xiangcui Zeng, Ming Xu, Mingna Li, Fan Zhang, Fei He, Tianhui Yang, Chuan Wang, Ting Gao, Ruicai Long, Qingchuan Yang, Junmei Kang","doi":"10.1093/hr/uhae271","DOIUrl":"10.1093/hr/uhae271","url":null,"abstract":"<p><p>Appropriate root system architecture (RSA) can improve alfalfa yield, yet its genetic basis remains largely unexplored. This study evaluated six RSA traits in 171 alfalfa genotypes grown under controlled greenhouse conditions. We also analyzed five yield-related traits in normal and drought stress environments and found a significant correlation (0.50) between root dry weight (RDW) and alfalfa dry weight under normal conditions (N_DW). A genome-wide association study (GWAS) was performed using 1 303 374 single-nucleotide polymorphisms (SNPs) to explore the relationships between RSA traits. Sixty significant SNPs (-log <sub><b>10</b></sub> (<i>P</i>) ≥ 5) were identified, with genes within the 50 kb upstream and downstream ranges primarily enriched in GO terms related to root development, hormone synthesis, and signaling, as well as morphological development. Further analysis identified 19 high-confidence candidate genes, including AUXIN RESPONSE FACTORs (ARFs), LATERAL ORGAN BOUNDARIES-DOMAIN (LBD), and WUSCHEL-RELATED HOMEOBOX (WOX). We verified that the forage dry weight under both normal and drought conditions exhibited significant differences among materials with different numbers of favorable haplotypes. Alfalfa containing more favorable haplotypes exhibited higher forage yields, whereas favorable haplotypes were not subjected to human selection during alfalfa breeding. Genomic prediction (GP) utilized SNPs from GWAS and machine learning for each RSA trait, achieving prediction accuracies ranging from 0.70 for secondary root position (SRP) to 0.80 for root length (RL), indicating robust predictive capability across the assessed traits. These findings provide new insights into the genetic underpinnings of root development in alfalfa, potentially informing future breeding strategies aimed at improving yield.</p>","PeriodicalId":57479,"journal":{"name":"园艺研究(英文)","volume":"12 1","pages":"uhae271"},"PeriodicalIF":7.6,"publicationDate":"2025-01-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11725648/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142980894","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Editorial: introducing dedication reviews-broad reviews in plant and horticultural sciences. 社论：介绍奉献评论-植物和园艺科学的广泛评论。
IF 7.6
园艺研究(英文) Pub Date : 2025-01-06 eCollection Date: 2025-01-01 DOI: 10.1093/hr/uhae358
Zong-Ming Max Cheng
{"title":"Editorial: introducing dedication reviews-broad reviews in plant and horticultural sciences.","authors":"Zong-Ming Max Cheng","doi":"10.1093/hr/uhae358","DOIUrl":"https://doi.org/10.1093/hr/uhae358","url":null,"abstract":"","PeriodicalId":57479,"journal":{"name":"园艺研究(英文)","volume":"12 1","pages":"uhae358"},"PeriodicalIF":7.6,"publicationDate":"2025-01-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11775615/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143070003","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
plantGIR: a genomic database of plants. plantGIR：植物基因组数据库。
IF 7.6
园艺研究(英文) Pub Date : 2024-12-05 eCollection Date: 2024-12-01 DOI: 10.1093/hr/uhae342
Zhuo Liu, Chenhao Zhang, Jinghua He, Chunjin Li, Yanhong Fu, Yongfeng Zhou, Rui Cao, Haibin Liu, Xiaoming Song
{"title":"plantGIR: a genomic database of plants.","authors":"Zhuo Liu, Chenhao Zhang, Jinghua He, Chunjin Li, Yanhong Fu, Yongfeng Zhou, Rui Cao, Haibin Liu, Xiaoming Song","doi":"10.1093/hr/uhae342","DOIUrl":"10.1093/hr/uhae342","url":null,"abstract":"","PeriodicalId":57479,"journal":{"name":"园艺研究(英文)","volume":"11 12","pages":"uhae342"},"PeriodicalIF":7.6,"publicationDate":"2024-12-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11661351/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142878714","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Population genetics and origin of horticultural germplasm in Clematis via genotyping-by-sequencing. 基于基因分型测序的铁线莲园艺种质资源的群体遗传与起源。
IF 7.6
园艺研究(英文) Pub Date : 2024-11-29 eCollection Date: 2025-03-01 DOI: 10.1093/hr/uhae336
Yaping Hu, Qingdi Hu, Xiaohua Ma, Xule Zhang, Jian Zheng
{"title":"Population genetics and origin of horticultural germplasm in <i>Clematis</i> via genotyping-by-sequencing.","authors":"Yaping Hu, Qingdi Hu, Xiaohua Ma, Xule Zhang, Jian Zheng","doi":"10.1093/hr/uhae336","DOIUrl":"10.1093/hr/uhae336","url":null,"abstract":"","PeriodicalId":57479,"journal":{"name":"园艺研究(英文)","volume":"12 3","pages":"uhae336"},"PeriodicalIF":7.6,"publicationDate":"2024-11-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11886852/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143588549","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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