Annual Review of Marine Science最新文献_第9页

Environmental DNA Metabarcoding: A Novel Method for Biodiversity Monitoring of Marine Fish Communities. 环境DNA元条形码:海洋鱼类群落生物多样性监测的新方法。

IF 17.3 1区地球科学

Annual Review of Marine Science Pub Date : 2022-01-03 Epub Date: 2021-08-05 DOI: 10.1146/annurev-marine-041421-082251

Masaki Miya

{"title":"Environmental DNA Metabarcoding: A Novel Method for Biodiversity Monitoring of Marine Fish Communities.","authors":"Masaki Miya","doi":"10.1146/annurev-marine-041421-082251","DOIUrl":"https://doi.org/10.1146/annurev-marine-041421-082251","url":null,"abstract":"Environmental DNA (eDNA) is genetic material that has been shed from macroorganisms. It has received increased attention as an indirect marker for biodiversity monitoring. This article reviews the current status of eDNA metabarcoding (simultaneous detection of multiple species) as a noninvasive and cost-effective approach for monitoring marine fish communities and discusses the prospects for this growing field. eDNA metabarcoding coamplifies short fragments of fish eDNA across a wide variety of taxa and, coupled with high-throughput sequencing technologies, allows massively parallel sequencing to be performed simultaneously for dozens to hundreds of samples. It can predict species richness in a given area, detect habitat segregation and biogeographic patterns from small to large spatial scales, and monitor the spatiotemporal dynamics of fish communities. In addition, it can detect an anthropogenic impact on fish communities through evaluation of their functional diversity. Recognizing the strengths and limitations of eDNA metabarcoding will help ensure that continuous biodiversity monitoring at multiple sites will be useful for ecosystem conservation and sustainable use of fishery resources, possibly contributing to achieving the targets of the United Nations' Sustainable Development Goal 14 for 2030.","PeriodicalId":55508,"journal":{"name":"Annual Review of Marine Science","volume":"14 ","pages":"161-185"},"PeriodicalIF":17.3,"publicationDate":"2022-01-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39277525","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 50

The Functional and Ecological Significance of Deep Diving by Large Marine Predators. 大型海洋捕食者深海潜水的功能和生态意义。

IF 17.3 1区地球科学

Annual Review of Marine Science Pub Date : 2022-01-03 Epub Date: 2021-08-20 DOI: 10.1146/annurev-marine-032521-103517

Camrin D Braun, Martin C Arostegui, Simon R Thorrold, Yannis P Papastamatiou, Peter Gaube, Jorge Fontes, Pedro Afonso

引用次数: 24

Earth, Wind, Fire, and Pollution: Aerosol Nutrient Sources and Impacts on Ocean Biogeochemistry. 地球、风、火和污染:气溶胶营养源及其对海洋生物地球化学的影响。

IF 17.3 1区地球科学

Annual Review of Marine Science Pub Date : 2022-01-03 Epub Date: 2021-08-20 DOI: 10.1146/annurev-marine-031921-013612

Douglas S Hamilton, Morgane M G Perron, Tami C Bond, Andrew R Bowie, Rebecca R Buchholz, Cecile Guieu, Akinori Ito, Willy Maenhaut, Stelios Myriokefalitakis, Nazlı Olgun, Sagar D Rathod, Kerstin Schepanski, Alessandro Tagliabue, Robert Wagner, Natalie M Mahowald

{"title":"Earth, Wind, Fire, and Pollution: Aerosol Nutrient Sources and Impacts on Ocean Biogeochemistry.","authors":"Douglas S Hamilton, Morgane M G Perron, Tami C Bond, Andrew R Bowie, Rebecca R Buchholz, Cecile Guieu, Akinori Ito, Willy Maenhaut, Stelios Myriokefalitakis, Nazlı Olgun, Sagar D Rathod, Kerstin Schepanski, Alessandro Tagliabue, Robert Wagner, Natalie M Mahowald","doi":"10.1146/annurev-marine-031921-013612","DOIUrl":"https://doi.org/10.1146/annurev-marine-031921-013612","url":null,"abstract":"A key Earth system science question is the role of atmospheric deposition in supplying vital nutrients to the phytoplankton that form the base of marine food webs. Industrial and vehicular pollution, wildfires, volcanoes, biogenic debris, and desert dust all carry nutrients within their plumes throughout the globe. In remote ocean ecosystems, aerosol deposition represents an essential new source of nutrients for primary production. The large spatiotemporal variability in aerosols from myriad sources combined with the differential responses of marine biota to changing fluxes makes it crucially important to understand where, when, and how much nutrients from the atmosphere enter marine ecosystems. This review brings together existing literature, experimental evidence of impacts, and new atmospheric nutrient observations that can be compared with atmospheric and ocean biogeochemistry modeling. We evaluate the contribution and spatiotemporal variability of nutrient-bearing aerosols from desert dust, wildfire, volcanic, and anthropogenic sources, including the organic component, deposition fluxes, and oceanic impacts.","PeriodicalId":55508,"journal":{"name":"Annual Review of Marine Science","volume":"14 ","pages":"303-330"},"PeriodicalIF":17.3,"publicationDate":"2022-01-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39329912","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 38

Ecological Leverage Points: Species Interactions Amplify the Physiological Effects of Global Environmental Change in the Ocean. 生态杠杆点:物种相互作用放大海洋全球环境变化的生理效应。

IF 17.3 1区地球科学

Annual Review of Marine Science Pub Date : 2022-01-03 Epub Date: 2021-08-20 DOI: 10.1146/annurev-marine-042021-051211

Kristy J Kroeker, Eric Sanford

{"title":"Ecological Leverage Points: Species Interactions Amplify the Physiological Effects of Global Environmental Change in the Ocean.","authors":"Kristy J Kroeker, Eric Sanford","doi":"10.1146/annurev-marine-042021-051211","DOIUrl":"https://doi.org/10.1146/annurev-marine-042021-051211","url":null,"abstract":"Marine ecosystems are increasingly impacted by global environmental changes, including warming temperatures, deoxygenation, and ocean acidification. Marine scientists recognize intuitively that these environmental changes are translated into community changes via organismal physiology. However, physiology remains a black box in many ecological studies, and coexisting species in a community are often assumed to respond similarly to environmental stressors. Here, we emphasize how greater attention to physiology can improve our ability to predict the emergent effects of ocean change. In particular, understanding shifts in the intensity and outcome of species interactions such as competition and predation requires a sharpened focus on physiological variation among community members and the energetic demands and trophic mismatches generated by environmental changes. Our review also highlights how key species interactions that are sensitive to environmental change can operate as ecological leverage points through which small changes in abiotic conditions are amplified into large changes in marine ecosystems.","PeriodicalId":55508,"journal":{"name":"Annual Review of Marine Science","volume":"14 ","pages":"75-103"},"PeriodicalIF":17.3,"publicationDate":"2022-01-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39332230","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 14

Machine Learning for the Study of Plankton and Marine Snow from Images. 从图像中研究浮游生物和海洋雪的机器学习

IF 17.3 1区地球科学

Annual Review of Marine Science Pub Date : 2022-01-03 Epub Date: 2021-08-30 DOI: 10.1146/annurev-marine-041921-013023

Jean-Olivier Irisson, Sakina-Dorothée Ayata, Dhugal J Lindsay, Lee Karp-Boss, Lars Stemmann

引用次数: 44

The History of Ocean Oxygenation. 海洋氧化的历史。

IF 17.3 1区地球科学

Annual Review of Marine Science Pub Date : 2022-01-03 Epub Date: 2021-08-20 DOI: 10.1146/annurev-marine-031721-104005

Christopher T Reinhard, Noah J Planavsky

{"title":"The History of Ocean Oxygenation.","authors":"Christopher T Reinhard, Noah J Planavsky","doi":"10.1146/annurev-marine-031721-104005","DOIUrl":"https://doi.org/10.1146/annurev-marine-031721-104005","url":null,"abstract":"The large-scale dynamics of ocean oxygenation have changed dramatically throughout Earth's history, in step with major changes in the abundance of O2 in the atmosphere and changes to marine nutrient availability. A comprehensive mechanistic understanding of this history requires insights from oceanography, marine geology, geochemistry, geomicrobiology, evolutionary ecology, and Earth system modeling. Here, we attempt to synthesize the major features of evolving ocean oxygenation on Earth through more than 3 billion years of planetary history. We review the fundamental first-order controls on ocean oxygen distribution and summarize the current understanding of the history of ocean oxygenation on Earth from empirical and theoretical perspectives-integrating geochemical reconstructions of oceanic and atmospheric chemistry, genomic constraints on evolving microbial metabolism, and mechanistic biogeochemical models. These changes are used to illustrate primary regimes of large-scale ocean oxygenation and to highlight feedbacks that can act to stabilize and destabilize the ocean-atmosphere system in anoxic, low-oxygen, and high-oxygen states.","PeriodicalId":55508,"journal":{"name":"Annual Review of Marine Science","volume":"14 ","pages":"331-353"},"PeriodicalIF":17.3,"publicationDate":"2022-01-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39329910","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 19

Modeling the Morphodynamics of Coastal Responses to Extreme Events: What Shape Are We In? 海岸对极端事件反应的形态动力学建模：我们处于什么状态？

IF 17.3 1区地球科学

Annual Review of Marine Science Pub Date : 2022-01-03 Epub Date: 2021-07-27 DOI: 10.1146/annurev-marine-032221-090215

Christopher R Sherwood, Ap van Dongeren, James Doyle, Christie A Hegermiller, Tian-Jian Hsu, Tarandeep S Kalra, Maitane Olabarrieta, Allison M Penko, Yashar Rafati, Dano Roelvink, Marlies van der Lugt, Jay Veeramony, John C Warner

{"title":"Modeling the Morphodynamics of Coastal Responses to Extreme Events: What Shape Are We In?","authors":"Christopher R Sherwood, Ap van Dongeren, James Doyle, Christie A Hegermiller, Tian-Jian Hsu, Tarandeep S Kalra, Maitane Olabarrieta, Allison M Penko, Yashar Rafati, Dano Roelvink, Marlies van der Lugt, Jay Veeramony, John C Warner","doi":"10.1146/annurev-marine-032221-090215","DOIUrl":"https://doi.org/10.1146/annurev-marine-032221-090215","url":null,"abstract":"This review focuses on recent advances in process-based numerical models of the impact of extreme storms on sandy coasts. Driven by larger-scale models of meteorology and hydrodynamics, these models simulate morphodynamics across the Sallenger storm-impact scale, including swash,collision, overwash, and inundation. Models are becoming both wider (as more processes are added) and deeper (as detailed physics replaces earlier parameterizations). Algorithms for wave-induced flows and sediment transport under shoaling waves are among the recent developments. Community and open-source models have become the norm. Observations of initial conditions (topography, land cover, and sediment characteristics) have become more detailed, and improvements in tropical cyclone and wave models provide forcing (winds, waves, surge, and upland flow) that is better resolved and more accurate, yielding commensurate improvements in model skill. We foresee that future storm-impact models will increasingly resolve individual waves, apply data assimilation, and be used in ensemble modeling modes to predict uncertainties.","PeriodicalId":55508,"journal":{"name":"Annual Review of Marine Science","volume":"14 ","pages":"457-492"},"PeriodicalIF":17.3,"publicationDate":"2022-01-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39232003","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 23

The Balance of Nature: A Global Marine Perspective. 自然平衡:全球海洋视角。

IF 17.3 1区地球科学

Annual Review of Marine Science Pub Date : 2022-01-03 Epub Date: 2021-06-11 DOI: 10.1146/annurev-marine-010318-095212

Constantin W Arnscheidt, Daniel H Rothman

引用次数: 4

The Physiology and Biogeochemistry of SUP05. SUP05的生理和生物地球化学。

IF 17.3 1区地球科学

Annual Review of Marine Science Pub Date : 2022-01-03 Epub Date: 2021-08-20 DOI: 10.1146/annurev-marine-010419-010814

Robert M Morris, Rachel L Spietz

引用次数: 8

The Enzymology of Ocean Global Change. 海洋全球变化的酶学。

IF 17.3 1区地球科学

Annual Review of Marine Science Pub Date : 2022-01-03 Epub Date: 2021-08-20 DOI: 10.1146/annurev-marine-032221-084230

David A Hutchins, Sergio A Sañudo-Wilhelmy

{"title":"The Enzymology of Ocean Global Change.","authors":"David A Hutchins, Sergio A Sañudo-Wilhelmy","doi":"10.1146/annurev-marine-032221-084230","DOIUrl":"https://doi.org/10.1146/annurev-marine-032221-084230","url":null,"abstract":"A small subset of marine microbial enzymes and surface transporters have a disproportionately important influence on the cycling of carbon and nutrients in the global ocean. As a result, they largely determine marine biological productivity and have been the focus of considerable research attention from microbial oceanographers. Like all biological catalysts, the activity of these keystone biomolecules is subject to control by temperature and pH, leaving the crucial ecosystem functions they support potentially vulnerable to anthropogenic environmental change. We summarize and discuss both consensus and conflicting evidence on the effects of sea surface warming and ocean acidification for five of these critical enzymes [carbonic anhydrase, ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisCO), nitrogenase, nitrate reductase, and ammonia monooxygenase] and one important transporter (proteorhodopsin). Finally, we forecast how the responses of these few but essential biocatalysts to ongoing global change processes may ultimately help to shape the microbial communities and biogeochemical cycles of the future greenhouse ocean.","PeriodicalId":55508,"journal":{"name":"Annual Review of Marine Science","volume":"14 ","pages":"187-211"},"PeriodicalIF":17.3,"publicationDate":"2022-01-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39332231","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 5