Annual Review of Marine Science最新文献

Learning-Based Methods and the Future of Numerical Ocean and Sea-Ice Modeling. 基于学习的方法和海洋和海冰数值模拟的未来。

IF 22.5 1区地球科学

Annual Review of Marine Science Pub Date : 2026-09-18 DOI: 10.1146/annurev-marine-040125-074353

Charlotte Durand, Daria Botvynko, Hugo Frezat, Davide Grande, Andrea Storto, David S Greenberg, Ronan Fablet, Saïd Ouala, Julien Le Sommer

{"title":"Learning-Based Methods and the Future of Numerical Ocean and Sea-Ice Modeling.","authors":"Charlotte Durand, Daria Botvynko, Hugo Frezat, Davide Grande, Andrea Storto, David S Greenberg, Ronan Fablet, Saïd Ouala, Julien Le Sommer","doi":"10.1146/annurev-marine-040125-074353","DOIUrl":"https://doi.org/10.1146/annurev-marine-040125-074353","url":null,"abstract":"The field of operational oceanography is undergoing a significant evolution with the increasing integration of artificial intelligence (AI) methods, which are complementing and, in some cases, redefining traditional numerical modeling approaches. This review explores how AI methods-particularly model-based autoregressive emulators, hybrid modeling, and end-to-end model-free approaches-are reshaping the representation of ocean and sea-ice dynamics in operational systems. We focus on three key objects: sea-ice parameters, near-surface ocean properties, and the 3D ocean state, each of which is characterized by distinct observational and dynamical challenges. While AI-driven innovations offer new opportunities for improved monitoring, forecasting, and uncertainty quantification, their long-term impact on operational systems remains uncertain, especially given the sparsity of subsurface observations and the complexity of ocean dynamics. By synthesizing recent advances and identifying open questions, this article aims to guide the ocean modeling community toward a future where AI and physics-based approaches coexist synergistically.","PeriodicalId":55508,"journal":{"name":"Annual Review of Marine Science","volume":" ","pages":""},"PeriodicalIF":22.5,"publicationDate":"2026-09-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149002865","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Metaproteomics in the Study of Marine Microbial Processes: Opportunities in Ocean Research and Diagnosis. 海洋微生物过程研究：海洋研究和诊断的机会。

IF 22.5 1区地球科学

Annual Review of Marine Science Pub Date : 2026-09-16 DOI: 10.1146/annurev-marine-040725-024122

Mak A Saito, Noelle A Held, Loay J Jabre

{"title":"Metaproteomics in the Study of Marine Microbial Processes: Opportunities in Ocean Research and Diagnosis.","authors":"Mak A Saito, Noelle A Held, Loay J Jabre","doi":"10.1146/annurev-marine-040725-024122","DOIUrl":"https://doi.org/10.1146/annurev-marine-040725-024122","url":null,"abstract":"Proteins are abundant biomolecules that serve key functions in marine microbial communities, such as enzymes catalyzing biogeochemical reactions and transporters acquiring scarce nutrients. The measurement of proteins in biologically diverse microbial communities, such as those in ocean environments, is called metaproteomics. In recent years, metaproteomics methodologies have matured into powerful and practical approaches that contribute valuable functional and diagnostic information about microbial physiology, metabolism, and biogeochemistry. In this review, we introduce the conceptual foundations and methodological principles of marine metaproteomics; discuss current applications in marine microbiology, ocean biogeochemistry, and ecosystem diagnosis; and evaluate emerging frontiers, including quantitative stoichiometric inference, biomarker development, and global-scale interoperability. We argue that metaproteomics has reached a pivotal stage: poised not only to complement other meta-omics approaches but also to become an accessible central tool for diagnosing marine ecosystem function and understanding microbial responses to environmental change.","PeriodicalId":55508,"journal":{"name":"Annual Review of Marine Science","volume":" ","pages":""},"PeriodicalIF":22.5,"publicationDate":"2026-09-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148984228","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Cryptic Biogeochemical Cycles in Methanic Marine Sediments. 甲烷海洋沉积物中隐生生物地球化学循环。

IF 22.5 1区地球科学

Annual Review of Marine Science Pub Date : 2026-09-16 DOI: 10.1146/annurev-marine-040425-014149

Orit Sivan, Gilad Antler, Hanni Vigderovich, André Pellerin

{"title":"Cryptic Biogeochemical Cycles in Methanic Marine Sediments.","authors":"Orit Sivan, Gilad Antler, Hanni Vigderovich, André Pellerin","doi":"10.1146/annurev-marine-040425-014149","DOIUrl":"https://doi.org/10.1146/annurev-marine-040425-014149","url":null,"abstract":"Marine sediment biogeochemistry has long been interpreted through the framework of vertical redox zonation, in which organic matter remineralization proceeds through a thermodynamically ordered sequence of terminal electron acceptors. Evidence accumulated over the past two decades has fundamentally challenged this concept. In many marine sediments, multiple metabolic pathways operate simultaneously, linked through rapid recycling of reactive intermediates and sustaining microbial activity without significant expression in net concentration profiles, referred to as cryptic cycling. These cryptic cycles are also prevalent in the deep methanic zone, which has been considered generally inactive. Here, we review cryptic biogeochemical cycles in methanic marine sediments. We discuss methodological approaches for detecting these hidden processes and synthesize evidence from both the base of the sulfate-methane transition zone and the deeper methanic zone. These cycles demonstrate that methanic sediments are far more metabolically active than has been traditionally assumed, with important implications for methane fluxes, nutrient cycling, and mineral diagenesis.","PeriodicalId":55508,"journal":{"name":"Annual Review of Marine Science","volume":" ","pages":""},"PeriodicalIF":22.5,"publicationDate":"2026-09-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148984219","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Changes in Ocean Heat, Carbon Content, Ventilation, and Biology: A Review of the Second Decade of GO-SHIP Global Repeat Hydrography. 海洋热、碳含量、通风和生物学的变化：GO-SHIP全球重复水文测量第二个十年的回顾。

IF 22.5 1区地球科学

Annual Review of Marine Science Pub Date : 2026-09-16 DOI: 10.1146/annurev-marine-040725-022155

Elaine L McDonagh, Leticia Barbero, Martin Kramp, Sarah G Purkey, Alonso Hernández-Guerra, Brendan R Carter, Laura Cimoli, Xabier Davila, Masao Ishii, Bernadette M Sloyan, Katrin Schroeder, Yvonne Firing, Karen I Stocks, Marta Álvarez, Cristina Arumi, Levente Bodrossy, Verónica Caínzos, Vanessa Cardin, Lidia I Carracedo, Leah N Chomiak, Giuseppe Civitarese, Zachary K Erickson, Denise Fernandez, Marcos Fontela, Annie Foppert, Geoffrey Gebbie, Mario Hoppema, Emil Jeansson, Gregory C Johnson, Laurie W Juranek, Siv K Lauvset, Adam C Martiny, Herlé Mercier, Takuro Nunoura, Fiz F Pérez, Eric J Raes, Cesar Rocha, Masahito Shigemitsu, Reiner Steinfeldt, Lynne D Talley, Toste Tanhua, Luke Thompson, William J Williams, Quran Wu, Taichi Yokokawa

{"title":"Changes in Ocean Heat, Carbon Content, Ventilation, and Biology: A Review of the Second Decade of GO-SHIP Global Repeat Hydrography.","authors":"Elaine L McDonagh, Leticia Barbero, Martin Kramp, Sarah G Purkey, Alonso Hernández-Guerra, Brendan R Carter, Laura Cimoli, Xabier Davila, Masao Ishii, Bernadette M Sloyan, Katrin Schroeder, Yvonne Firing, Karen I Stocks, Marta Álvarez, Cristina Arumi, Levente Bodrossy, Verónica Caínzos, Vanessa Cardin, Lidia I Carracedo, Leah N Chomiak, Giuseppe Civitarese, Zachary K Erickson, Denise Fernandez, Marcos Fontela, Annie Foppert, Geoffrey Gebbie, Mario Hoppema, Emil Jeansson, Gregory C Johnson, Laurie W Juranek, Siv K Lauvset, Adam C Martiny, Herlé Mercier, Takuro Nunoura, Fiz F Pérez, Eric J Raes, Cesar Rocha, Masahito Shigemitsu, Reiner Steinfeldt, Lynne D Talley, Toste Tanhua, Luke Thompson, William J Williams, Quran Wu, Taichi Yokokawa","doi":"10.1146/annurev-marine-040725-022155","DOIUrl":"https://doi.org/10.1146/annurev-marine-040725-022155","url":null,"abstract":"Here, we review scientific advances based on the second decade of Global Ocean Ship-Based Hydrographic Investigations Program (GO-SHIP) repeat hydrographic observations, collected between 2014 and 2023, building on an earlier review of GO-SHIP's first decade and its predecessor programs, Climate and Ocean Variability, Predictability, and Change (CLIVAR) and the World Ocean Circulation Experiment (WOCE). During the second decade of GO-SHIP, 50 reference sections were occupied by 10 nations. Scientific advances include continued monitoring of the oceanic uptake of deep heat and anthropogenic carbon associated with climate change, as well as concomitant salinity, oxygen, and nutrient changes. In addition, we present results from new methods to analyze GO-SHIP observations that provide new insights into the patterns of anthropogenic warming in the ocean and water mass inversions that inform full-depth ocean ventilation. Finally, in this decade, GO-SHIP has expanded its scope to incorporate regional seas that represent hotspots of climate-driven change (the Arctic Ocean and Mediterranean Sea) and built a nascent biological component (Bio-GO-SHIP), and we review key results from these efforts.","PeriodicalId":55508,"journal":{"name":"Annual Review of Marine Science","volume":" ","pages":""},"PeriodicalIF":22.5,"publicationDate":"2026-09-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148984217","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

New Views on Cobalamin in Marine Microbial Ecosystems. 海洋微生物生态系统中钴胺素的新认识

IF 22.5 1区地球科学

Annual Review of Marine Science Pub Date : 2026-09-16 DOI: 10.1146/annurev-marine-040224-030633

Erin M Bertrand, Catherine C Bannon, Katherine E Helliwell, Yoshiko Kondo, Margaret Mars Brisbin, Anna Tausch, Gerrit Wienhausen

引用次数: 0

The Sponge Loop: How an Ancient Animal-Microbe Engine Fuels Modern Ocean Ecosystems. 海绵循环：一个古老的动物-微生物引擎如何为现代海洋生态系统提供燃料。

IF 22.5 1区地球科学

Annual Review of Marine Science Pub Date : 2026-09-11 DOI: 10.1146/annurev-marine-040523-021051

Jasper M de Goeij, Meggie Hudspith, Michelle Achlatis, Cole G Easson, Christopher J Freeman, Cara L Fiore, Benjamin Mueller

{"title":"The Sponge Loop: How an Ancient Animal-Microbe Engine Fuels Modern Ocean Ecosystems.","authors":"Jasper M de Goeij, Meggie Hudspith, Michelle Achlatis, Cole G Easson, Christopher J Freeman, Cara L Fiore, Benjamin Mueller","doi":"10.1146/annurev-marine-040523-021051","DOIUrl":"https://doi.org/10.1146/annurev-marine-040523-021051","url":null,"abstract":"Sponges can be considered biological engines that fuel the ecology of shallow-water to deep-sea ecosystems through the sponge loop. Here, we discuss new insights on the role of the sponge holobiont in the uptake, transformation, and transfer of resources that fuel the many food webs in which sponge engines operate. The tightly coupled animal-microbe partnership consists of many intrinsic traits (e.g., growth form, tissue architecture, and number and diversity of microbial symbionts) that depend on a huge variety of environmental factors (e.g., temperature, light, and both organic and inorganic resources). The sponge loop mediates resource cycling at organismal, ecosystem, and potentially even global scales. Linking sponge physiology and microbiome function with ecosystem budgets and refined global biomass estimates to situate sponges within Earth's elemental cycles, including the biological carbon pump, is necessary to transition from illustrative case studies to predictive theory and to forecast the response of sponge engines to future ocean conditions.","PeriodicalId":55508,"journal":{"name":"Annual Review of Marine Science","volume":" ","pages":""},"PeriodicalIF":22.5,"publicationDate":"2026-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148946244","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Translating Bioengineering Principles to Coral Reef Restoration Under Climate Change. 生物工程原理在气候变化下珊瑚礁恢复中的应用

IF 22.5 1区地球科学

Annual Review of Marine Science Pub Date : 2026-09-11 DOI: 10.1146/annurev-marine-040825-121115

Daniel Wangpraseurt, Alexander U Valle-Pérez

{"title":"Translating Bioengineering Principles to Coral Reef Restoration Under Climate Change.","authors":"Daniel Wangpraseurt, Alexander U Valle-Pérez","doi":"10.1146/annurev-marine-040825-121115","DOIUrl":"https://doi.org/10.1146/annurev-marine-040825-121115","url":null,"abstract":"Coral reefs support immense biodiversity and human well-being, yet accelerating environmental change is driving unprecedented losses of habitat-forming hard corals in recent decades and demands new strategies to strengthen reef resilience. Advances in bioengineering are expanding the controllable parameter space of living systems, enabling intervention at genetic, cellular, and microenvironmental scales, thereby creating new possibilities for scalable coral reef restoration. In this review, we synthesize recent bioengineering advances applied to coral restoration, focusing on key bottlenecks such as recruitment limitation, outplant survivorship, bleaching susceptibility, and early mortality These approaches include controlled-release surfaces for inductive settlement signals, antifouling and growth-optimized substrates, modular biofabrication platforms, targeted microbiome manipulation, and nanomaterial-mediated mitigation of oxidative stress. We argue that, if successfully translated at scale, bioengineering approaches could prove transformative for sustaining reef ecosystem function under accelerating climate change.","PeriodicalId":55508,"journal":{"name":"Annual Review of Marine Science","volume":" ","pages":""},"PeriodicalIF":22.5,"publicationDate":"2026-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148946271","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

From Communication to Co-Creation: A Spectrum of Publicly Engaged Marine Science. 从沟通到共同创造：公众参与海洋科学的光谱。

IF 22.5 1区地球科学

Annual Review of Marine Science Pub Date : 2026-09-08 DOI: 10.1146/annurev-marine-050625-101056

Tessa M Hill

引用次数: 0

Deep Learning to Infer Ocean Dynamics. 深度学习推断海洋动力学。

IF 22.5 1区地球科学

Annual Review of Marine Science Pub Date : 2026-09-08 DOI: 10.1146/annurev-marine-040324-023244

Georgy E Manucharyan, Scott A Martin, Dhruv Balwada, Jinbo Wang

{"title":"Deep Learning to Infer Ocean Dynamics.","authors":"Georgy E Manucharyan, Scott A Martin, Dhruv Balwada, Jinbo Wang","doi":"10.1146/annurev-marine-040324-023244","DOIUrl":"https://doi.org/10.1146/annurev-marine-040324-023244","url":null,"abstract":"Inferring ocean dynamics remains challenging due to the complexity of multiscale nonlinear interactions, sparsity of observations, and limitations of numerical models. Deep learning (DL) has emerged as a powerful data-driven framework that exploits nonlinear dependencies across heterogeneous datasets, complementing traditional approaches. Here, we review recent progress in applying DL to ocean dynamics, including spatiotemporal interpolation of satellite and in situ data, estimation of unobserved ocean variables, neural data assimilation, ocean forecasting, and the development of eddy parameterizations for hybrid models. DL methods have excelled at fusing multimodal observations, reconstructing multiscale fields, learning complex distributions, and providing computationally efficient predictions that often match or exceed those of conventional statistical approaches. Despite the rapid methodological progress, opportunities remain in uncertainty quantification, ensuring physical consistency, generalization to unseen conditions, and leveraging DL beyond obtaining operational gains to advance scientific discovery and human-level understanding of ocean dynamics.","PeriodicalId":55508,"journal":{"name":"Annual Review of Marine Science","volume":" ","pages":""},"PeriodicalIF":22.5,"publicationDate":"2026-09-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148914460","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Changes in Southern Ocean Circulation Across Climate Transitions and Their Impacts on Carbon and Heat Fluxes. 气候变迁过程中南大洋环流的变化及其对碳和热通量的影响。

IF 22.5 1区地球科学

Annual Review of Marine Science Pub Date : 2026-09-01 DOI: 10.1146/annurev-marine-040324-024235

Laurie Menviel, Christo Buizert, Zanna Chase, Adele K Morrison, Ariaan Purich, Luke C Skinner

{"title":"Changes in Southern Ocean Circulation Across Climate Transitions and Their Impacts on Carbon and Heat Fluxes.","authors":"Laurie Menviel, Christo Buizert, Zanna Chase, Adele K Morrison, Ariaan Purich, Luke C Skinner","doi":"10.1146/annurev-marine-040324-024235","DOIUrl":"https://doi.org/10.1146/annurev-marine-040324-024235","url":null,"abstract":"Today, the Southern Ocean (SO) is the primary sink of anthropogenic heat and carbon, yet anthropogenic warming and ozone depletion have altered its circulation and stratification, creating uncertainty about the persistence of this sink. Evidence from the last glacial period and deglaciation shows that the SO played a central role in past climate transitions by releasing heat and carbon to the atmosphere through sea-ice retreat and enhanced ventilation of deep and abyssal waters. Antarctic warming during weak Atlantic Meridional Overturning Circulation (AMOC) phases was likely amplified by SO feedbacks, such as increased deep-ocean convection, and a strengthening/poleward shift of Southern Hemisphere westerlies. However, changes in the abyssal circulation, its interaction with North Atlantic Deep Water, and its impact on oceanic carbon during the deglaciation remain debated. Finally, although sediment and modeling evidence suggests that Antarctic Ice Sheet (AIS) discharge can significantly affect climate and biogeochemistry, clear signals remain scarce in existing proxy records-either masked by dominant AMOC-driven variability or unresolved due to limited temporal resolution. Improved model representation and proxy records are needed to clarify the role of abyssal circulation and the interaction between the ocean and AIS.","PeriodicalId":55508,"journal":{"name":"Annual Review of Marine Science","volume":" ","pages":""},"PeriodicalIF":22.5,"publicationDate":"2026-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148875727","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0