Australian Systematic Botany最新文献

{"title":"The impact of multiple molecular and morphological data sets on the phylogenetic reconstruction of subtribe Neurachninae (Poaceae: Panicoideae: Paniceae)","authors":"E. Thompson, Melodina D. Fabillo","doi":"10.1071/SB20015","DOIUrl":"https://doi.org/10.1071/SB20015","url":null,"abstract":"Abstract. The taxonomy of Neurachninane has been unstable, with its member genera consisting of Ancistrachne, Calyptochloa, Cleistochloa, Dimorphochloa, Neurachne, Paraneurachne and Thyridolepis, changing since its original circumscription that comprised only the latter three genera. Recent studies on the phylogeny of Neurachninae have focused primarily on molecular data. We analysed the phylogeny of Neurachninae on the basis of molecular data from seven molecular loci (plastid markers: matK, ndhF, rbcL, rpl16, rpoC2 and trnLF, and ribosomal internal transcribed spacer, ITS) and morphological data from 104 morphological characters, including new taxonomically informative micromorphology of upper paleas. We devised an impact assessment scoring (IAS) protocol to aid selection of a tree for inferring the phylogeny of Neurachninae. Combining morphological and molecular data resulted in a well resolved phylogeny with the highest IAS value. Our findings support reinstatement of subtribe Neurachninae in its original sense, Neurachne muelleri and Dimorphochloa rigida. We show that Ancistrachne, Cleistochloa and Dimorphochloa are not monophyletic and Ancistrachne maidenii, Calyptochloa, Cleistochloa and Dimorphochloa form a new group, the cleistogamy group, united by having unique morphology associated with reproductive dimorphism.","PeriodicalId":55416,"journal":{"name":"Australian Systematic Botany","volume":"34 1","pages":"227 - 251"},"PeriodicalIF":1.6,"publicationDate":"2021-04-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48991383","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Phylogeographic patterns of the Australian grass trees (Xanthorrhoea Asphodelaceae) shown using targeted amplicon sequencing","authors":"Todd G. B. McLay, P. Ladiges, S. Doyle, M. Bayly","doi":"10.1071/SB20013","DOIUrl":"https://doi.org/10.1071/SB20013","url":null,"abstract":"Abstract. Despite the prevalence of sclerophyllous vegetation in Australia, there are few phylogeographic studies with continent-wide sampling addressing questions about the expansion of this vegetation post-aridification, and what physical barriers are associated with breaks in distribution or patterns of genetic structure. We used amplicon sequencing of plastid and nuclear DNA to investigate phylogeography of Xanthorrhoea. Despite extremely low genetic variation and widespread sharing of identical DNA sequence among multiple species and across significant geographic distance, haplotype analyses showed phylogeographic structure. Network analysis of six plastid loci and 137 samples identified 54 haplotypes (two common, 35 unique to single samples) in three geographic groups, south west and central Australia, northern–eastern Australia, and southern–eastern Australia, indicating restricted gene flow among regions. A nrDNA haplotype network of 152 samples showed less variation, with one haplotype being widespread, found in all three plastid geographic groups and 70% of species. nrDNA indicated four groups in a pattern, suggestive of at least two east–west divergences. A geographic area of a high haplotype diversity and divergence was identified in southern New South Wales, near the Southern Transition Zone. Our results showed the value of targeted amplicon sequencing and using multiple samples per species to identify both broad-scale and fine-scale biogeographic patterns.","PeriodicalId":55416,"journal":{"name":"Australian Systematic Botany","volume":"34 1","pages":"206 - 225"},"PeriodicalIF":1.6,"publicationDate":"2021-03-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42635160","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"A taxonomic revision of the Australasian genera Dracophyllum and Richea (Richeeae: Styphelioideae: Ericaceae)","authors":"S. Venter","doi":"10.1071/sb19049","DOIUrl":"https://doi.org/10.1071/sb19049","url":null,"abstract":"\u0000The genus Dracophyllum Labill. is revised, with a total of 61 species being recognised in four subgenera and two species (Dracophyllum minimum F.Muell. and D. strictum Hook.f.) are listed as incertae sedis. The genus Richea R.Br. is reduced to synonymy under Dracophyllum where it is divided into two new subgenera, namely, Dracophyllum subgenus Cystanthe (R.Br.) S.Venter and D. subgenus Richea (R.Br.) S.Venter. Replacement names published here are Dracophyllum laciniatum S.Venter, D. persistentifolium S.Venter and D. tasmanicum S.Venter, and new combinations published here are Dracophyllum alpinum (Menadue) S.Venter, D. continentis (B.L.Burtt) S.Venter, D. desgrazii (Hombr. ex Decne.) S.Venter, D. gunnii (Hook.f.) S.Venter, D. pandanifolia (Hook.f.) S.Venter, D. procerum (F.Muell.) S.Venter, D. sprengelioides (R.Br.) S.Venter and D. victorianum (Menadue) S.Venter. Nomenclature, descriptions, illustrations, photographs and distribution maps are provided for each species and lectotypes are designated where necessary. A key to the subgenera and keys to species within these are provided.\u0000","PeriodicalId":55416,"journal":{"name":"Australian Systematic Botany","volume":"34 1","pages":"226 - 226"},"PeriodicalIF":1.6,"publicationDate":"2021-01-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45544105","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Taxonomic revision of the Myosotis australis group (Boraginaceae) native to Australia, New Zealand and New Guinea","authors":"Heidi M. Meudt, M. Thorsen, Jessica M. Prebble","doi":"10.1071/SB20014","DOIUrl":"https://doi.org/10.1071/SB20014","url":null,"abstract":"Abstract. The three main aims of this study were to circumscribe the Myosotis australis R.Br. group, determine the taxonomic utility of pollen characters, and delimit species and revise their taxonomy using macro-morphological and palynological data. The M. australis group is here recircumscribed to comprise two species, M. saxatilis Petrie (Marlborough and Otago, New Zealand) and M. australis. Myosotis australis is a widespread, morphologically variable species with two subspecies. M. australis subsp. australis comprises all Australian and most New Zealand specimens, including M. mooreana Lehnebach, M. lytteltonensis (Laing & A.Wall) de Lange, and several white- or yellow-flowered tag-named taxa from New Zealand, whereas M. australis subsp. saruwagedica (Schltr. ex Brand) Meudt, Thorsen & Prebble, comb. et stat. nov. is endemic to New Guinea. The M. australis group can be distinguished from all other ebracteate-erect Myosotis plants sampled to date, including the Australian endemic, M. exarrhena F.Muell., by a suite of characters, i.e. included anthers, calyx with both retrorse and hooked trichomes, rosette leaf trichomes retrorse abaxially and oblique to the midrib adaxially, and leaf length : width ratio of >2 : 1. Other characters can distinguish the group from M. discolor Pers., M. arvensis (L.) Hill, and M. umbrosa Meudt, Prebble & Thorsen respectively. Pollen characters were not useful for species delimitation within the M. australis group, but they can help distinguish several species outside it, including natural hybrids of M. australis and M. exarrhena in Australia. Myosotis australis, M. saxatilis and M. exarrhena are included in the taxonomic treatment, whereas introduced species M. discolor and M. arvensis are included in the key only.","PeriodicalId":55416,"journal":{"name":"Australian Systematic Botany","volume":"33 1","pages":"477 - 524"},"PeriodicalIF":1.6,"publicationDate":"2020-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43038394","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Circulating Extracellular Vesicle Tissue Factor Activity During Orthohantavirus Infection Is Associated With Intravascular Coagulation.","authors":"Clare M Schmedes, Steven P Grover, Yohei M Hisada, Marco Goeijenbier, Johan Hultdin, Sofie Nilsson, Therese Thunberg, Clas Ahlm, Nigel Mackman, Anne-Marie Fors Connolly","doi":"10.1093/infdis/jiz597","DOIUrl":"10.1093/infdis/jiz597","url":null,"abstract":"<p><strong>Background: </strong>Puumala orthohantavirus (PUUV) causes hemorrhagic fever with renal syndrome (HFRS). Patients with HFRS have an activated coagulation system with increased risk of disseminated intravascular coagulation (DIC) and venous thromboembolism (VTE). The aim of the study was to determine whether circulating extracellular vesicle tissue factor (EVTF) activity levels associates with DIC and VTE (grouped as intravascular coagulation) in HFRS patients.</p><p><strong>Methods: </strong>Longitudinal samples were collected from 88 HFRS patients. Patients were stratified into groups of those with intravascular coagulation (n = 27) and those who did not (n = 61). We measured levels of circulating EVTF activity, fibrinogen, activated partial prothrombin time, D-dimer, tissue plasminogen activator (tPA), plasminogen activator inhibitor 1 (PAI-1), and platelets.</p><p><strong>Results: </strong>Plasma EVTF activity was transiently increased during HFRS. Levels of EVTF activity were significantly associated with plasma tPA and PAI-1, suggesting that endothelial cells could be a potential source. Patients with intravascular coagulation had significantly higher peak EVTF activity levels compared with those who did not, even after adjustment for sex and age. The peak EVTF activity value predicting intravascular coagulation was 0.51 ng/L with 63% sensitivity and 61% specificity with area under the curve = 0.63 (95% confidence interval, 0.51-0.76) and P = .046.</p><p><strong>Conclusions: </strong>Plasma EVTF activity during HFRS is associated with intravascular coagulation.</p>","PeriodicalId":55416,"journal":{"name":"Australian Systematic Botany","volume":"29 1","pages":"1392-1399"},"PeriodicalIF":0.0,"publicationDate":"2020-09-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7488197/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"80705419","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"A molecular phylogeny of Eragrostis (Poaceae: Chloridoideae: Eragrostideae): making lovegrass monophyletic in Australia","authors":"Russell L. Barrett, P. M. Peterson, Konstantin Romaschenko","doi":"10.1071/SB19034","DOIUrl":"https://doi.org/10.1071/SB19034","url":null,"abstract":"Abstract. We present a phylogeny based on four DNA molecular markers (rps16–trnK spacer, rps16 intron, rpl32–trnL spacer and ITS) concentrating on species of Eragrostis Wolf in Australia. Two Australian radiations are shown within Eragrostis, one being centred in the arid zone and one in the monsoon tropics. The genus is paraphyletic, with species of Cladoraphis Franch., Ectrosia R.Br., Harpachne Hochst. ex A.Rich., Heterachne Benth., Neeragrostis Bush, Planichloa B.K.Simon, Psammagrostis C.A.Gardner & C.E.Hubb. and Stiburus Stapf together forming a well supported clade mixed with Eragrostis species. The molecular results are consistent with recognition of an expanded Eragrostis and we make the following new combinations for Australian taxa: Eragrostis agrostoides (Benth.) R.L.Barrett & P.M.Peterson, E. anomala (C.E.Hubb.) R.L.Barrett & P.M.Peterson, E. appressa (S.T.Blake) R.L.Barrett & P.M.Peterson, E. baileyi (C.E.Hubb.) R.L.Barrett & P.M.Peterson, E. blakei (C.E.Hubb.) R.L.Barrett & P.M.Peterson, E. confusa (C.E.Hubb.) R.L.Barrett & P.M.Peterson, E. danesii (Domin) R.L.Barrett & P.M.Peterson, E. gulliveri (F.Muell.) R.L.Barrett & P.M.Peterson, E. leporina (R.Br.) R.L.Barrett & P.M.Peterson, E. nervilemma (B.K.Simon) R.L.Barrett & P.M.Peterson, E. ovata (Night.) R.L.Barrett & P.M.Peterson, E. scabrida (C.E.Hubb.) R.L.Barrett & P.M.Peterson, E. wiseana (C.A.Gardner & C.E.Hubb.) R.L.Barrett & P.M.Peterson and Sporobolus ramigerus (F.Muell.) P.M.Peterson, Romasch. & R.L.Barrett, and propose the following new names: E. divergens R.L.Barrett & P.M.Peterson, E. lilliputiana R.L.Barrett & P.M.Peterson and E. nightingaleae R.L.Barrett & P.M.Peterson. Lectotypes are designated for Ectrosia agrostoides Benth., E. anomala C.E.Hubb., E. appressa S.T.Blake, E. baileyi C.E.Hubb., E. blakei C.E.Hubb., E. confusa C.E.Hubb., E. gulliveri F.Muell., E laxa S.T.Blake, E. leporina R.Br, E. leporina var. longiglumis C.E.Hubb., E. schultzii Benth., E. schultzii var. annua C.E.Hubb., E. spadicea R.Br., Glyceria australasica Steud., Heterachne gulliveri Benth., Heterachne gulliveri var. major C.E.Hubb. Poa ramigera F.Muell. and Psammagrostis wiseana C.A.Gardner & C.E.Hubb.","PeriodicalId":55416,"journal":{"name":"Australian Systematic Botany","volume":"33 1","pages":"458 - 476"},"PeriodicalIF":1.6,"publicationDate":"2020-08-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1071/SB19034","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49320598","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"A review of the fern genus Pellaea (Pteridaceae) in Australasia","authors":"P. Brownsey, D. Ohlsen, L. Shepherd, Whitney L. M. Bouma, Erin L. May, M. Bayly, L. Perrie","doi":"10.1071/SB20006","DOIUrl":"https://doi.org/10.1071/SB20006","url":null,"abstract":"Abstract. Five indigenous species of Pellaea in Australasia belong to section Platyloma. Their taxonomic history is outlined, morphological, cytological and genetic evidence for their recognition reviewed, and new morphological and chloroplast DNA-sequence data provided. Australian plants of P. falcata (R.Br.) Fée are diploid and have longer, narrower pinnae than do New Zealand plants previously referred to P. falcata, which are tetraploid. Evidence indicates that P. falcata does not occur in New Zealand, and that collections so-named are P. rotundifolia (G.Forst.) Hook. Chloroplast DNA sequences are uninformative in distinguishing Australian P. falcata from New Zealand P. rotundifolia, but show that Australian P. nana is distinct from both. Sequence data also show that Australian and New Zealand populations of P. calidirupium Brownsey & Lovis are closely related, and that Australian P. paradoxa (R.Br.) Hook. is distinct from other Australian species. Although P. falcata is diploid and P. rotundifolia tetraploid, P. calidirupium, P. nana (Hook.) Bostock and P. paradoxa each contain multiple ploidy levels. Diploid populations of Pellaea species are confined to Australia, and only tetraploids are known in New Zealand. Evolution of the group probably involved hybridisation, autoploidy, alloploidy, and possibly apomixis. Further investigation is required to resolve the status of populations from Mount Maroon, Queensland and the Kermadec Islands.","PeriodicalId":55416,"journal":{"name":"Australian Systematic Botany","volume":"33 1","pages":"446 - 457"},"PeriodicalIF":1.6,"publicationDate":"2020-07-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1071/SB20006","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42276495","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"A re-evaluation of the morphology of Sorapilla (Bryophyta: Sorapillaceae) based on Sorapilla papuana","authors":"D. Meagher, A. Cairns, R. Seppelt, Megan Grixti","doi":"10.1071/SB19050","DOIUrl":"https://doi.org/10.1071/SB19050","url":null,"abstract":"Sorapilla Spruce & Mitt. is a taxonomically problematic genus of mosses. In this paper one of the two known species, Sorapilla papuana Broth. & Geh., is described and illustrated in detail for the first time, and its morphological peculiarities are discussed. It is monoicous, rather than dioicous as had been assumed. The presence of an annulus on the capsule and sparse hairs on the calyptra, both suggested previously, are confirmed. Paraphyllia, which had been reported for Sorapilla, are not present. The phylogenetic position of Sorapilla remains uncertain.","PeriodicalId":55416,"journal":{"name":"Australian Systematic Botany","volume":"33 1","pages":"427 - 435"},"PeriodicalIF":1.6,"publicationDate":"2020-07-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44649486","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"First example of hybridisation between two Australian figs (Moraceae)","authors":"Brendan C. Wilde, S. Rutherford, M. M. van der Merwe, M. L. Murray, M. Rossetto","doi":"10.1071/SB19048","DOIUrl":"https://doi.org/10.1071/SB19048","url":null,"abstract":"Abstract. The chance discovery of an unusual Ficus specimen near Katherine in the Northern Territory prompted an investigation into hybridisation between two morphologically distinct endemic Australian sandpaper figs, Ficus aculeata A.Cunn. ex Miq. and F. coronulata Miq. In this study, genome-wide scans and morphological measurements were used to investigate the perceived hybridisation by using herbarium and freshly collected samples. Most of the putative hybrids displayed a wide variety of intermediate morphology and some individuals had characteristics consistent with the description of a third species, F. carpentariensis D.J.Dixon. Both genomic and morphometric results provided evidence of naturally occurring hybridisation events within Ficus. Additionally, the findings from this study showed possible taxonomic issues within the Northern Australian sandpaper figs that warrant further investigation.","PeriodicalId":55416,"journal":{"name":"Australian Systematic Botany","volume":"33 1","pages":"436 - 445"},"PeriodicalIF":1.6,"publicationDate":"2020-07-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1071/SB19048","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48499740","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Genetic variation and phylogeography of the Australian and New Zealand fern Asplenium flabellifolium (Aspleniaceae)","authors":"D. Ohlsen, L. Shepherd, L. Perrie, P. Brownsey, M. Bayly","doi":"10.1071/SB20001","DOIUrl":"https://doi.org/10.1071/SB20001","url":null,"abstract":"Abstract. Asplenium flabellifolium Cav. is a cytologically variable Australian and New Zealand fern. Here, we sequence chloroplast trnL-trnF and rps4-trnS from samples throughout its range to provide the first phylogeographic investigation of a fern common in both countries. Twenty-three haplotypes were detected, which formed six haplogroups in a network. Australian specimens were placed in all haplogroups. The placement of New Zealand haplotypes in five of the haplogroups suggests that this species has dispersed across the Tasman Sea at least five times. Sexually reproducing plants of lower ploidy, detected only in south-eastern Australia, contained haplotypes from the two haplogroups that are successive sisters to the remaining diversity in the phylogeny. This likely suggests that A. flabellifolium was originally a sexually reproducing species in south-eastern Australia and spread to the rest of its distribution where apomictic plants dominate. More than one haplogroup was detected in several areas across its distribution, suggesting that these areas were colonised several times. Other areas harboured several haplotypes from a single haplogroup or haplogroups not recovered elsewhere, indicating possible long-term persistence in these areas. Haplotypes and morphological features were not found to be exclusive to either breeding system or ploidy and no taxonomic revision is proposed.","PeriodicalId":55416,"journal":{"name":"Australian Systematic Botany","volume":"33 1","pages":"412 - 426"},"PeriodicalIF":1.6,"publicationDate":"2020-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1071/SB20001","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49220243","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}