Journal of Zoological Systematics and Evolutionary Research最新文献

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Unraveling the Phylogenetic Relationships and Taxonomic Status of a Puzzling Freshwater Mussel Genus Inversidens (Bivalvia, Unionidae) through Multilocus Phylogeny and Mitochondrial Phylogenomics 通过多焦点系统发育和线粒体系统组学揭示令人费解的淡水贻贝属 Inversidens(双壳类,联合科)的系统发育关系和分类地位
IF 1.9 2区 生物学
Journal of Zoological Systematics and Evolutionary Research Pub Date : 2024-01-08 DOI: 10.1155/2024/1499508
Ruiwen Wu, Liping Zhang, Lili Liu, Junli Jia, Xiongjun Liu
{"title":"Unraveling the Phylogenetic Relationships and Taxonomic Status of a Puzzling Freshwater Mussel Genus Inversidens (Bivalvia, Unionidae) through Multilocus Phylogeny and Mitochondrial Phylogenomics","authors":"Ruiwen Wu,&nbsp;Liping Zhang,&nbsp;Lili Liu,&nbsp;Junli Jia,&nbsp;Xiongjun Liu","doi":"10.1155/2024/1499508","DOIUrl":"10.1155/2024/1499508","url":null,"abstract":"<div>\u0000 <p>Accurate phylogenetic reconstructions are crucial for comprehending the evolutionary histories, reproductive traits, and ecological habits of organisms. The subfamily Gonideinae of freshwater mussels is currently thought to include eight tribes. However, due to inadequate taxon sampling and molecular data, the assignment of the freshwater mussel genus <i>Inversidens</i> at the tribe level has been unstable. Additionally, the lack of phylogenetic data has hindered efforts to understand the basic biology and implementation of conservation efforts of <i>Inversidens rentianensis</i>, an endemic species to China. Here, we first present the complete mitochondrial genome of <i>Inversidens rentianensis</i> and offer a detailed description of its anatomical morphology. Based on DNA sequence data from five genes (COI, ND1, 16S rRNA, 18S rRNA, and 28S rRNA) and complete mitochondrial genomes, we investigated the phylogenetic position of <i>Inversidens</i> using various analytical methods. Both the concatenated five-gene and mitogenome datasets strongly supported that <i>Inversidens</i> classified to the tribe Gonideini in Gonideinae and formed a basal clade within the tribe Gonideini. Molecular dating analysis suggested that <i>Inversidens</i> originated during the mid-Cretaceous era (102.73 Mya, 95% highest posterior density (HPD) = 72.22-137.03 Mya) and underwent diversification in the Late Paleogene era (37.92 Mya, 95% HPD = 20.39-60.59 Mya). Moreover, based on the Quantitative Assessment of Species for Conservation (QASCP), <i>Inversidens rentianensis</i> is ranked as second priority, providing valuable insights for its management and conservation efforts. Taken together, this study provides a comprehensive understanding of the systematic position and evolutionary history of <i>Inversidens</i> within the currently accepted subfamily Gonideinae classification framework. These findings establish a solid foundation for future investigations on the ecology, reproductive behavior patterns, and conservation biology of this taxonomic group.</p>\u0000 </div>","PeriodicalId":54751,"journal":{"name":"Journal of Zoological Systematics and Evolutionary Research","volume":"2024 1","pages":""},"PeriodicalIF":1.9,"publicationDate":"2024-01-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1155/2024/1499508","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139397015","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Diversity, Abundance, and Distribution of Avifauna in District Jhang, Pakistan 巴基斯坦Jhang地区鸟类的多样性、丰度和分布
IF 2 2区 生物学
Journal of Zoological Systematics and Evolutionary Research Pub Date : 2023-12-05 DOI: 10.1155/2023/3308651
Ahmad Zaman, Azhar Rafique, Asma Ashraf, Muhammad Shahid Mahmood, Nazia Nahid, Farhat Jabeen, Salma Sultana, Tayyaba Sultana, Sultan Ali, S. M. Neamul Kabir Zihad, Shaikh Jamal Uddin
{"title":"Diversity, Abundance, and Distribution of Avifauna in District Jhang, Pakistan","authors":"Ahmad Zaman,&nbsp;Azhar Rafique,&nbsp;Asma Ashraf,&nbsp;Muhammad Shahid Mahmood,&nbsp;Nazia Nahid,&nbsp;Farhat Jabeen,&nbsp;Salma Sultana,&nbsp;Tayyaba Sultana,&nbsp;Sultan Ali,&nbsp;S. M. Neamul Kabir Zihad,&nbsp;Shaikh Jamal Uddin","doi":"10.1155/2023/3308651","DOIUrl":"10.1155/2023/3308651","url":null,"abstract":"<div>\u0000 <p>The present study was conducted from March 2021 to February 2022 in the Thal desert and Trimmu barrage of district Jhang located in the Punjab province of Pakistan to find out the diversity, abundance, and distribution of birds. The point count method was used for the Trimmu barrage, and the line transect method was used for the collection of data in the Thal desert area. We recorded 31,696 individuals belonging to 67 species of birds from two distinct types of habitats (Thal desert and Trimmu barrage) of district Jhang. Among these species, 39 species were residents, 18 species were winter visitors, 9 species were summer breeders, and a single species (Terek sandpiper) was a passage migrant. Highly significant differences (<i>X</i><sup>2</sup> = 14979.7, df = 11, and <i>P</i> &lt; 0.01) were observed in the abundance of birds between both habitats on every month. From the Thal desert area, 12,905 individuals belonging to 45 species were identified while 18,791 individuals from 58 bird species were observed in the Trimmu barrage, with 36 bird species among 67 species being common at both habitats. The most dominant species of the Trimmu barrage were the common pochard, little grebe, common coot, cattle egret, gadwall, little egret, red-wattled lapwing, and common teal. On the other hand, the Indian roller, common quail, cattle egret, common myna, and Indian kite were found to be the most common species in the Thal desert. The most notable feature of the present study is the identification of <i>Xenus cinereus</i> (Terek sandpiper) and <i>Ammomanes phoenicura</i> (rufous-tailed lark) in district Jhang as both species had no previous record in the study area. The Trimmu barrage was the more diverse and abundant site compared to the Thal desert as it provides both terrestrial and aquatic habitats for birds. The study determined that more varieties in the habitat and thermal changes affect the diversity, abundance, and distribution of birds.</p>\u0000 </div>","PeriodicalId":54751,"journal":{"name":"Journal of Zoological Systematics and Evolutionary Research","volume":"2023 1","pages":""},"PeriodicalIF":2.0,"publicationDate":"2023-12-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1155/2023/3308651","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138507614","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Clarification of Phylogenetic Relationships among Chinese Nemacheilids with Tube-Shaped Anterior Nostrils, with a Description of a New Genus and Two New Species 中国前鼻孔管状拟鼻纲的系统发育关系澄清,附一新属和两新种描述
IF 2 2区 生物学
Journal of Zoological Systematics and Evolutionary Research Pub Date : 2023-06-02 DOI: 10.1155/2023/3600085
Li-Na Du, Shu-Jing Li, Fei Xu, Tao Luo, Fu-Guang Luo, Guo-Hua Yu, Jiang Zhou
{"title":"Clarification of Phylogenetic Relationships among Chinese Nemacheilids with Tube-Shaped Anterior Nostrils, with a Description of a New Genus and Two New Species","authors":"Li-Na Du,&nbsp;Shu-Jing Li,&nbsp;Fei Xu,&nbsp;Tao Luo,&nbsp;Fu-Guang Luo,&nbsp;Guo-Hua Yu,&nbsp;Jiang Zhou","doi":"10.1155/2023/3600085","DOIUrl":"10.1155/2023/3600085","url":null,"abstract":"<div>\u0000 <p>Nostril structures are important characteristics for generic diagnosis in Nemacheilidae and Cobitidae. Based on phylogenetic analysis, we found that 10 genera within Nemacheilidae (<i>Eonemachilus</i>, <i>Guinemachilus</i>, <i>Lefua</i>, <i>Micronemacheilus</i>, <i>Oreonectes</i>, <i>Paranemachilus</i>, <i>Protonemacheilus</i>, <i>Traccatichthys</i>, <i>Troglonectes</i>, and <i>Yunnanilus</i>) shared tube-shaped anterior nostrils and formed a monophyletic group. Morphologically, the location between the anterior and posterior nostrils was divided into three types: (i) separated, i.e., a distance greater than 1.5 times the diameter of the posterior nostril; (ii) adjacent, i.e., a distance shorter than the diameter of the posterior nostril; and (iii) closely set, i.e., posterior margin of the anterior nostril connected to the anterior margin of the posterior nostril. Thus, the 10 genera can be distinguished based on nostril features. Additionally, we describe one new genus, <i>Guinemachilus</i> gen. nov., and two new species, <i>Guinemachilus pseudopulcherrimus</i> sp. nov. and <i>Paranemachilus chongzuo</i> sp. nov.</p>\u0000 </div>","PeriodicalId":54751,"journal":{"name":"Journal of Zoological Systematics and Evolutionary Research","volume":"2023 1","pages":""},"PeriodicalIF":2.0,"publicationDate":"2023-06-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1155/2023/3600085","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47021394","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Positive Selection in Zinc Finger Protein Reveals Genetic Signatures of Adaptive Evolution in Undifferentiated Stem Cells during Evolution in Mammals 锌指蛋白的阳性选择揭示了哺乳动物进化过程中未分化干细胞适应性进化的遗传特征
IF 2 2区 生物学
Journal of Zoological Systematics and Evolutionary Research Pub Date : 2023-05-29 DOI: 10.1155/2023/6693488
Mahboob Ali, Palwasha Khan, Mahreen Mahmood, Jilong Han, Gulnaz Afzal, Iram Qadeer, Syed Ali Azmal, Nadia R. A. El-Mouhty, Samy F. Mahmoud, Ibrahim Jafri, Muhammad Ali, Nighat Hashmi
{"title":"Positive Selection in Zinc Finger Protein Reveals Genetic Signatures of Adaptive Evolution in Undifferentiated Stem Cells during Evolution in Mammals","authors":"Mahboob Ali,&nbsp;Palwasha Khan,&nbsp;Mahreen Mahmood,&nbsp;Jilong Han,&nbsp;Gulnaz Afzal,&nbsp;Iram Qadeer,&nbsp;Syed Ali Azmal,&nbsp;Nadia R. A. El-Mouhty,&nbsp;Samy F. Mahmoud,&nbsp;Ibrahim Jafri,&nbsp;Muhammad Ali,&nbsp;Nighat Hashmi","doi":"10.1155/2023/6693488","DOIUrl":"10.1155/2023/6693488","url":null,"abstract":"<div>\u0000 <p>Positive selection refers to the process by which certain genetic variations are more likely to be passed on to future generations because they confer some advantage in terms of survival or reproduction. Zinc finger proteins are a type of transcription factor that plays a role in regulating gene expression, particularly in undifferentiated stem cells. Suppose it has been found that certain zinc finger proteins show genetic signatures of positive selection in mammals. In that case, it suggests that these proteins may have played a role in adaptive evolution in undifferentiated stem cells. This could mean that the specific genetic changes in these zinc finger proteins gave an advantage to the organisms that possessed them, helping them survive and reproduce more effectively. These genetic changes may have allowed the organisms to adapt to changing environments or to develop new abilities, such as increased resistance to disease or faster growth. Undifferentiated stem cells that underwent adaptive evolution during the evolution of mammals can be identified genetically by the outcomes of positive selection on zinc finger proteins. Because of selection pressures like environmental shifts or the introduction of novel pathogens, it is plausible that some zinc finger proteins have experienced fast evolution. The emergence of novel activities or higher expression levels of these proteins as a result of this quick evolution may have given the creatures that possessed them a survival edge. Another possible outcome of positive selection in zinc finger proteins is the emergence of new genetic variations that allow for increased diversity and plasticity in stem cells. This increased diversity and plasticity could have allowed for more efficient adaptation to changing environments and could have played a role in the evolution of new organisms or new characteristics in existing organisms. Overall, the results of positive selection in zinc finger proteins can provide insight into how adaptive evolution occurred in undifferentiated stem cells during the evolution of mammals and how this evolution may have contributed to the development of new organisms and new characteristics and adaptations to changing environments.</p>\u0000 </div>","PeriodicalId":54751,"journal":{"name":"Journal of Zoological Systematics and Evolutionary Research","volume":"2023 1","pages":""},"PeriodicalIF":2.0,"publicationDate":"2023-05-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1155/2023/6693488","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49370756","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Refining the “Melting Pot” Genus Holosticha s. l. (Protozoa, Ciliophora, Hypotrichia) Based on Multigene Datasets with Establishment of a New Species Caudikeronopsis monilata sp. nov. 基于多基因数据集的“大熔炉”属Holosticha s.l .(原生动物,纤毛虫目,低毛虫目)精化及新种Caudikeronopsis monilata sp. nov的建立
IF 2 2区 生物学
Journal of Zoological Systematics and Evolutionary Research Pub Date : 2023-05-22 DOI: 10.1155/2023/3411188
Xumiao Chen, Ju Li, Kuidong Xu
{"title":"Refining the “Melting Pot” Genus Holosticha s. l. (Protozoa, Ciliophora, Hypotrichia) Based on Multigene Datasets with Establishment of a New Species Caudikeronopsis monilata sp. nov.","authors":"Xumiao Chen,&nbsp;Ju Li,&nbsp;Kuidong Xu","doi":"10.1155/2023/3411188","DOIUrl":"10.1155/2023/3411188","url":null,"abstract":"<div>\u0000 <p>The genus <i>Holosticha s. l.</i> is a typical “melting pot” group with an intricate history, and so far, it has been divided into eleven genera. Both newly obtained taxonomic and molecular data provide the opportunity to gain more insights to outline the taxa in it and to understand their systematic and evolutionary relationship. Here, we describe <i>Caudikeronopsis monilata</i> sp. nov. from intertidal sediment on the China coast of the Yellow Sea and analyze the phylogenetic relationships of <i>Holosticha s. l.</i> by obtaining a total of 16 new sequences of seven isolates. The results demonstrate that (1) the morphological features of <i>Holosticha s. str.</i> are outlined very well, but its systematic relationship with <i>Uncinata</i> is still puzzling; (2) based on both morphological and molecular databases, the genera <i>Adumbratosticha</i>, <i>Arcuseries</i>, <i>Caudikeronopsis</i>, <i>Extraholosticha</i>, and “<i>Holosticha</i> + <i>Uncinata</i>” complex are separated clearly from each other in the phylogenetic analyses; and (3) the <i>Anteholosticha</i> isolates are dispersed among the urostylids in the phylogenetic analyses, even though its generic diagnostic features are described very clearly. In the present work, however, the secondary structure predictions do not provide better resolutions for understanding the systematic and evolutionary relationships among the holostichids. And the genus <i>Anteholosticha</i> becomes a new “melting pot” taxon.</p>\u0000 </div>","PeriodicalId":54751,"journal":{"name":"Journal of Zoological Systematics and Evolutionary Research","volume":"2023 1","pages":""},"PeriodicalIF":2.0,"publicationDate":"2023-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1155/2023/3411188","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45016033","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Molecular Evolution of Interferon-Epsilon (IFNε) Pseudogene Modulates Innate and Specific Antiviral Immunity in Manis javanica 干扰素ε假基因的分子进化调节爪哇蟾蜍的天然和特异性抗病毒免疫
IF 2 2区 生物学
Journal of Zoological Systematics and Evolutionary Research Pub Date : 2023-05-13 DOI: 10.1155/2023/2949008
Hafiz Ishfaq Ahmad, Laraib Jameel, Quratulain Zahra, Jiabin Zhou, Linmiao Li, Xiujuan Zhang, Shakeel Ahmed, Daoud Ali, Gokhlesh Kumar, Aleena Safdar, Farhan Abbas, Jinping Chen
{"title":"Molecular Evolution of Interferon-Epsilon (IFNε) Pseudogene Modulates Innate and Specific Antiviral Immunity in Manis javanica","authors":"Hafiz Ishfaq Ahmad,&nbsp;Laraib Jameel,&nbsp;Quratulain Zahra,&nbsp;Jiabin Zhou,&nbsp;Linmiao Li,&nbsp;Xiujuan Zhang,&nbsp;Shakeel Ahmed,&nbsp;Daoud Ali,&nbsp;Gokhlesh Kumar,&nbsp;Aleena Safdar,&nbsp;Farhan Abbas,&nbsp;Jinping Chen","doi":"10.1155/2023/2949008","DOIUrl":"10.1155/2023/2949008","url":null,"abstract":"<div>\u0000 <p>Interferon-Epsilon (<i>IFNε</i>) is a type of interferon, a protein that plays a role in the immune response to viral infections. This study is aimed at examining the molecular evolution of the <i>IFNε</i> pseudogene in <i>Manis javanica</i>, and it has been found to modulate the innate and specific antiviral immunity in this species. In this study, we identified that <i>IFNε</i> gene has undergone rapid evolution in <i>Manis javanica,</i> with the human and primate IFN<i>ε</i> genes showing evidence of positive selection. This suggests that <i>IFNε</i> has played an important role in the evolution of the immune system, possibly in response to coevolution with viral pathogens. Comparative genomic analysis revealed that the <i>IFNε</i> pseudogene in pangolins originated from a gene duplication event approximately 48 million years ago. It subsequently lost its protein-coding function due to multiple deleterious mutations. However, the <i>IFNε</i> pseudogene exhibits a high degree of conservation in its promoter region, suggesting it may still play a regulatory role in antiviral immunity. This suggests that the pseudogene may have evolved to serve an important function in the pangolin’s immune system, potentially helping to protect it from viral infections. The molecular evolution of <i>IFNε</i> provides insights into the coevolutionary dynamics between host immune systems and viral pathogens and may have implications for developing new antiviral therapies.</p>\u0000 </div>","PeriodicalId":54751,"journal":{"name":"Journal of Zoological Systematics and Evolutionary Research","volume":"2023 1","pages":""},"PeriodicalIF":2.0,"publicationDate":"2023-05-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1155/2023/2949008","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48821635","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Evolutionary History and Taxonomic Reclassification of the Critically Endangered Daggernose Shark, a Species Endemic to the Western Atlantic 西大西洋特有物种、极度濒危的匕首鼻鲨的进化史和分类学重新分类
IF 2 2区 生物学
Journal of Zoological Systematics and Evolutionary Research Pub Date : 2023-03-20 DOI: 10.1155/2023/4798805
Luis Fernando da Silva Rodrigues-Filho, Paula da Costa Nogueira, Davidson Sodré, José Rafael da Silva Leal, Jorge Luiz Silva Nunes, Getulio Rincon, Rosangela Paula Teixeira Lessa, Iracilda Sampaio, Marcelo Vallinoto, Jonathan S. Ready, João Bráullio Luna Sales
{"title":"Evolutionary History and Taxonomic Reclassification of the Critically Endangered Daggernose Shark, a Species Endemic to the Western Atlantic","authors":"Luis Fernando da Silva Rodrigues-Filho,&nbsp;Paula da Costa Nogueira,&nbsp;Davidson Sodré,&nbsp;José Rafael da Silva Leal,&nbsp;Jorge Luiz Silva Nunes,&nbsp;Getulio Rincon,&nbsp;Rosangela Paula Teixeira Lessa,&nbsp;Iracilda Sampaio,&nbsp;Marcelo Vallinoto,&nbsp;Jonathan S. Ready,&nbsp;João Bráullio Luna Sales","doi":"10.1155/2023/4798805","DOIUrl":"10.1155/2023/4798805","url":null,"abstract":"<div>\u0000 <p>The family Carcharhinidae includes the most typical and recognizable sharks, although its internal classification is the subject of extensive debate. In particular, the type genus, <i>Carcharhinus</i> Blainville, 1816, which is also the most speciose, appears to be paraphyletic in relation to a number of morphologically distinct taxa. <i>Isogomphodon oxyrhynchus</i> (Valenciennes, 1839) (the daggernose shark) is a carcharinid, which is endemic to a limited area of the Western Atlantic between Trinidad and Tobago and the Gulf of Maranhão in northern Brazil, one of the smallest ranges of any New World elasmobranch species. In recent decades, <i>I. oxyrhynchus</i> populations have been decimated by anthropogenic impacts, which has led to the classification of the species as critically endangered by the IUCN. However, there is considerable debate on both the validity of the species (<i>I. oxyrhynchus</i>) and the status of <i>Isogomphodon</i> Gill, 1862 as a distinct entity from the genus <i>Carcharhinus</i>. The present study is based on a molecular assessment of the genetic validity of the <i>I. oxyrhynchus</i> that combines mitochondrial and nuclear markers, which were used to identify the biogeographic events responsible for the emergence and dispersal of the species in northern Brazil. The genetic distance analyses and phylogenetic trees confirmed the paraphyly of the genus <i>Carcharhinus</i>, recovering a clade comprising <i>Carcharhinus</i>+<i>I. oxyrhynchus</i>+<i>Prionace glauca</i> (Linnaeus, 1758). Our results indicate not only that the daggernose shark is actually a member of the genus <i>Carcharhinus</i>, but that it is genetically more closely related to <i>Carcharhinus porosus</i> (Ranzani, 1839) than it is to the other <i>Carcharhinus</i> species analyzed. Given this, <i>I. oxyrhynchus</i> and <i>P. glauca</i> are therefore reclassified and recognized as <i>Carcharhinus oxyrhynchus</i> and <i>Carcharhinus glaucus</i>. The daggernose shark, <i>Carcharhinus oxyrhynchus</i>, diverged from <i>C. porosus</i> during the Miocene, when significant geomorphological processes occurred on the northern coast of South America, in particular in relation to the configuration of the Amazon River. It is closely associated with the area of the Amazon plume, and its distinctive morphological features represent autapomorphic ecological adaptations to this unique habitat and do not reflect systematic distinction from <i>Carcharhinus</i>.</p>\u0000 </div>","PeriodicalId":54751,"journal":{"name":"Journal of Zoological Systematics and Evolutionary Research","volume":"2023 1","pages":""},"PeriodicalIF":2.0,"publicationDate":"2023-03-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1155/2023/4798805","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44655418","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Catch-All No More: Integrative Systematic Revision of the Genus Allolobophora Eisen, 1874 (Crassiclitellata, Lumbricidae) with the Description of Two New Relict Earthworm Genera 不再一网打尽:1874年异足虫属(Crassiclitellata,Lumbrickidae)的综合系统修订与两个新的蚯蚓属的描述
IF 2 2区 生物学
Journal of Zoological Systematics and Evolutionary Research Pub Date : 2023-02-15 DOI: 10.1155/2023/5479917
Alejandro Martínez Navarro, Sergio Jiménez Pinadero, Thibaud Decaëns, Mickaël Hedde, Marta Novo, Dolores Trigo, Daniel Fernández Marchán
{"title":"Catch-All No More: Integrative Systematic Revision of the Genus Allolobophora Eisen, 1874 (Crassiclitellata, Lumbricidae) with the Description of Two New Relict Earthworm Genera","authors":"Alejandro Martínez Navarro,&nbsp;Sergio Jiménez Pinadero,&nbsp;Thibaud Decaëns,&nbsp;Mickaël Hedde,&nbsp;Marta Novo,&nbsp;Dolores Trigo,&nbsp;Daniel Fernández Marchán","doi":"10.1155/2023/5479917","DOIUrl":"10.1155/2023/5479917","url":null,"abstract":"<div>\u0000 <p>The taxonomy of earthworms has been riddled by instability, lack of systematically useful characters, and lax diagnoses of some genera. This has led to the use of some genera such as <i>Allolobophora</i> Eisen, 1874 as taxonomic wastebaskets, blurring their evolution and biogeographical history. The implementation of molecular techniques has revolutionized the systematics of the genus; however, some of its species have not been previously included in molecular phylogenetic analyses. Thus, the molecular markers COI, 16S, ND1, 12S, and 28S were sequenced for six endemic species including several taxa of <i>Allolobophora</i> and <i>Aporrectodea</i> Örely, 1885 (another related catch-all genus). Phylogenetic relationships determined by Bayesian inference and maximum likelihood analyses support the status of two of the six taxa examined (<i>Allolobophora burgondiae</i> Bouché, 1972 and <i>Aporrectodea icterica</i> Savigny, 1826) as part of <i>Allolobophora</i> sensu stricto and a presumed synonymy between <i>Allolobophora</i> and <i>Heraclescolex</i> Qiu and Bouché, 1998. Branch lengths and average pairwise genetic distances support the transfer of <i>Allolobophora satchelli</i> Bouché, 1972 to the genus <i>Panoniona</i> Mršić and Šapkarev, 1988 and the emergence of two new genera, <i>Heraultia</i> gen. nov. and <i>Vosgesia</i> gen. nov., endemic to France, hosting <i>Allolobophora tiginosa</i> Bouché, 1972 and <i>Allolobophora zicsii</i> Bouché, 1972, respectively. The aforementioned changes of status and the diagnosis for <i>Heraultia</i> and <i>Vosgesia</i> are presented. These results provided more evolutionarily and biogeographically coherent earthworm groups and highlighted that the Maghreb and the area around the Alps are potential key locations for the diversification of <i>Allolobophora</i> and several lineages of Lumbricidae.</p>\u0000 </div>","PeriodicalId":54751,"journal":{"name":"Journal of Zoological Systematics and Evolutionary Research","volume":"2023 1","pages":""},"PeriodicalIF":2.0,"publicationDate":"2023-02-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1155/2023/5479917","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48415743","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Reevaluation of the Systematic Status of Branchinotogluma (Annelida, Polynoidae), with the Establishment of Two New Species 以两个新种的建立为例,重新评价Branchinotogluma(环节动物,蓼科)的系统地位
IF 2 2区 生物学
Journal of Zoological Systematics and Evolutionary Research Pub Date : 2023-01-11 DOI: 10.1155/2023/1490800
Xuwen Wu, Wenquan Zhen, Qi Kou, Kuidong Xu
{"title":"Reevaluation of the Systematic Status of Branchinotogluma (Annelida, Polynoidae), with the Establishment of Two New Species","authors":"Xuwen Wu,&nbsp;Wenquan Zhen,&nbsp;Qi Kou,&nbsp;Kuidong Xu","doi":"10.1155/2023/1490800","DOIUrl":"10.1155/2023/1490800","url":null,"abstract":"<div>\u0000 <p><i>Branchinotogluma</i> is one of the most diverse genera among the polynoids inhabiting deep-sea chemosynthetic environments. A total of 14 species have been described from the hydrothermal vents and cold seeps worldwide. Our phylogenetic analyses based on four genes (COI, 16S, 18S, and 28S rRNA) recovered the current <i>Branchinotogluma</i> as paraphyletic, with seven clades scattered in two main clades. The monophyly of the main clade composed of <i>Branchinotogluma</i> (except <i>Branchinotogluma segonzaci</i>), <i>Branchipolynoe,</i> and <i>Peinaleopolynoe</i> is supported by the presence of 20–21 segments with 9–10 pairs of elytra, ventral papillae starting from segment 12 in males, and arborescent branchiae. The monophyly of another main clade composed of <i>B. segonzaci</i>, <i>Bathykurila</i>, <i>Lepidonotopodium</i>, <i>Levensteiniella</i>, and <i>Thermopolynoe</i> is supported by the presence of usually 22–30 segments with 11 pairs of elytra and the lack of ventral papillae in females. In addition, our study recognized two new species, <i>Branchinotogluma nanhaiensis</i> sp. nov. and <i>B</i>. <i>robusta</i> sp. nov., based on specimens collected from the deep-sea cold seeps in the South China Sea. Both the morphology and molecular phylogenetic analyses support the validity of the two new species and the sister relationships between <i>B. nanhaiensis</i> and <i>B</i>. <i>japonicus</i> and between <i>B. robusta</i> and <i>B</i>. <i>pettiboneae</i> as well.</p>\u0000 </div>","PeriodicalId":54751,"journal":{"name":"Journal of Zoological Systematics and Evolutionary Research","volume":"2023 1","pages":""},"PeriodicalIF":2.0,"publicationDate":"2023-01-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1155/2023/1490800","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43263082","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
High Phenotypic Diversity Does Not Always Hide Taxonomic Diversity: A Study Case with Cheilosia soror (Zetterstedt, 1843) (Diptera: Syrphidae) in the Iberian Peninsula 高表型多样性并不总是掩盖分类学多样性:以伊比利亚半岛的Cheilosia soror(Zetterstedt,1843)(双翅目:水蝇科)为例
IF 2 2区 生物学
Journal of Zoological Systematics and Evolutionary Research Pub Date : 2022-12-17 DOI: 10.1155/2022/8378483
Iván Ballester-Torres, Antonio Ricarte, Zorica Nedeljković, M. Ángeles Marcos-García
{"title":"High Phenotypic Diversity Does Not Always Hide Taxonomic Diversity: A Study Case with Cheilosia soror (Zetterstedt, 1843) (Diptera: Syrphidae) in the Iberian Peninsula","authors":"Iván Ballester-Torres,&nbsp;Antonio Ricarte,&nbsp;Zorica Nedeljković,&nbsp;M. Ángeles Marcos-García","doi":"10.1155/2022/8378483","DOIUrl":"10.1155/2022/8378483","url":null,"abstract":"<div>\u0000 <p>Comprising nearly 500 species worldwide, <i>Cheilosia</i> Meigen is the largest genus of Syrphidae in the Palaearctic region. Within <i>Cheilosia</i>, phenotypic diversity has been assessed in different species groups, including the group of <i>Cheilosia longula</i> (Zetterstedt, 1838). However, the phenotypic variability of <i>Cheilosia soror</i> (Zetterstedt, 1843), a highly variable member of the <i>C. longula</i> group, has never been assessed in western Europe. In the present work, morphological and molecular analyses were conducted to assess the phenotypic variability found in 300+ specimens of <i>C. soror</i> from the Iberian Peninsula. A total of 16 variable characters were identified and defined for the <i>C. soror</i> morphology, with the highest variation found in the colour of the mesonotum pilosity and the metatibia colour. Morphological variation was assessed against molecular variation based on two molecular markers, one mitochondrial, the 5′ end of the cytochrome c oxidase subunit I (COI-5′), and one nuclear, the large subunit ribosomal DNA (28S). Phylogenetic analyses rendered trees with topologies in disagreement with the defined morphological variation. Two haplotypes were identified amongst the analysed specimens of <i>C. soror</i>, together with a haplotypic variant exclusive to the Iberian region. Potential distributions were used to identify unexplored areas of occurrence of <i>C. soror</i> and other species of the <i>C. longula</i> group in the Iberian Peninsula. Unassessed areas of occurrence of <i>C. soror</i> should be surveyed in the future to confirm the absence of hidden taxonomic diversity within the range of phenotypic variation for this species. Phenotypic variation of the other two Iberian species of the <i>C. longula</i> group, <i>C. longula</i> and <i>C. scutellata</i> (Fallén, 1817), was also assessed to find that they are species with less-variable morphology than <i>C. soror</i> and with molecular characters in accordance with other conspecific populations in Europe. New distributional data are provided for <i>C. soror</i> and <i>C. scutellata</i> from Spain, and a leg abnormality is identified for the first time in <i>C. soror</i>.</p>\u0000 </div>","PeriodicalId":54751,"journal":{"name":"Journal of Zoological Systematics and Evolutionary Research","volume":"2022 1","pages":""},"PeriodicalIF":2.0,"publicationDate":"2022-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1155/2022/8378483","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43010809","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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