International Journal of Biological Markers最新文献

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Neutrophil-to-lymphocyte ratio trend: A novel prognostic predictor in patients with nasopharyngeal carcinoma receiving radiotherapy. 中性粒细胞与淋巴细胞比值趋势:鼻咽癌放疗患者的一种新的预后预测因子。
IF 2 4区 医学
International Journal of Biological Markers Pub Date : 2022-09-01 Epub Date: 2022-06-30 DOI: 10.1177/03936155221110250
Pei Yang, Yu Zhao, Hao Liang, Guanzhi Zhou, Bassem Youssef, Hesham Elhalawani, Meizhen Li, Fengbo Tan, Yi Jin, Hekun Jin, Hong Zhu, Abdallah Sherif Radwan Mohamed, Nantavithya Chonnipa, Danita Kannarunimit, Yingrui Shi, Hui Wang, Clifton David Fuller
{"title":"Neutrophil-to-lymphocyte ratio trend: A novel prognostic predictor in patients with nasopharyngeal carcinoma receiving radiotherapy.","authors":"Pei Yang,&nbsp;Yu Zhao,&nbsp;Hao Liang,&nbsp;Guanzhi Zhou,&nbsp;Bassem Youssef,&nbsp;Hesham Elhalawani,&nbsp;Meizhen Li,&nbsp;Fengbo Tan,&nbsp;Yi Jin,&nbsp;Hekun Jin,&nbsp;Hong Zhu,&nbsp;Abdallah Sherif Radwan Mohamed,&nbsp;Nantavithya Chonnipa,&nbsp;Danita Kannarunimit,&nbsp;Yingrui Shi,&nbsp;Hui Wang,&nbsp;Clifton David Fuller","doi":"10.1177/03936155221110250","DOIUrl":"https://doi.org/10.1177/03936155221110250","url":null,"abstract":"<p><strong>Background: </strong>Peripheral neutrophil-lymphocyte ratio (NLR), reflecting immune-inflammation status, shows great potential for tumor progression and outcome. Pre-treatment NLR does not fully reflect the immune-inflammatory response to treatment. This study aimed to introduce the NLR trend as a new indicator and to investigate its prognostic value in patients with nasopharyngeal carcinoma receiving radiotherapy.</p><p><strong>Methods: </strong>This retrospective study evaluated patients with nasopharyngeal carcinoma treated with radiotherapy. The NLR trend value was calculated from the fitted line gradient via the NLRs before, during (at least once), and after each patient's first radiotherapy. The Kaplan-Meier curve and log-rank test were used to calculate and compare survival outcomes of different pretreatment NLRs and NLR trends for progression-free survival, locoregional recurrence-free survival (LRFS), and overall survival at 3 and 5 years. Multivariate Cox regression analyses were performed to assess the association between the NLR trend plus 3- and 5-year overall survival.</p><p><strong>Results: </strong>The study included 528 patients. A lower NLR trend predicted worse progression-free survival, LRFS, plus 3- and 5-year overall survival. Multivariate Cox regression analysis showed that the NLR trend independently predicted 3- and 5-year overall survival. Sub-group analysis showed that the prognosis of patients with a low pretreatment NLR and a high NLR trend were superior to those of other groups.</p><p><strong>Conclusion: </strong>The NLR trend independently predicted the prognosis of patients with nasopharyngeal carcinoma receiving radiotherapy. The NLR trend and the pretreatment NLR combination is more precise than pretreatment NLR in predicting prognosis. A high NLR trend may be evidence of a positive immune response to radiotherapy in patients with nasopharyngeal carcinoma.</p>","PeriodicalId":50334,"journal":{"name":"International Journal of Biological Markers","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2022-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40462571","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Clinical significance of chromosomal integrity in gastric cancers. 胃癌染色体完整性的临床意义。
IF 2 4区 医学
International Journal of Biological Markers Pub Date : 2022-09-01 Epub Date: 2022-06-19 DOI: 10.1177/03936155221106217
Rukui Zhang, Zhaorui Liu, Xusheng Chang, Yuan Gao, Huan Han, Xiaona Liu, Hui Cai, Qiqing Fu, Lei Liu, Kai Yin
{"title":"Clinical significance of chromosomal integrity in gastric cancers.","authors":"Rukui Zhang,&nbsp;Zhaorui Liu,&nbsp;Xusheng Chang,&nbsp;Yuan Gao,&nbsp;Huan Han,&nbsp;Xiaona Liu,&nbsp;Hui Cai,&nbsp;Qiqing Fu,&nbsp;Lei Liu,&nbsp;Kai Yin","doi":"10.1177/03936155221106217","DOIUrl":"https://doi.org/10.1177/03936155221106217","url":null,"abstract":"<p><strong>Background: </strong>A whole-exome or targeted cancer genes panel by next-generation sequencing has been used widely in assisting individualized treatment decisions. Currently, multiple algorithms are developed to estimate DNA copy numbers based on sequencing data, which makes a comprehensive global glance at chromosomal integrity possible. We aim to classify gastric cancers based on chromosomal integrity to guide personalized therapy.</p><p><strong>Methods: </strong>We investigated copy number variations (CNV) across the entire genome of 124 gastric carcinomas via exome or targeted sequencing. Chromosomal integrity was classified as chromosomal stability (CS), chromosomal instability (CIN) and intermediate state (CIN/CS) based on CNV results. Chromosomal integrity was correlated to molecular features and clinical characteristics.</p><p><strong>Results: </strong>According the states of chromosomal integrity, gastric carcinomas can be stratified into two cohorts: CS and CIN. Our results showed a significant relationship between CIN status and TP53 mutation, but not RB1, phosphatase and tensin homolog (PTEN), or other reported DNA damage repair genes. The mutation frequency of the TP53 gene had great relevance. Our study initially revealed clinical significance of chromosomal integrity that CIN patients were prone to HER2-positive and mucinous adenocarcinoma, while CS patients were a diffuse subtype and poorly differentiated but had longer overall survival.</p><p><strong>Conclusions: </strong>We classified gastric carcinomas into two states of chromosomal integrity with clinical implications. The dichotomy is applicable to clinical transformation. We proposed that classifying gastric cancers based on chromosomal integrity would enable us to achieve personalized therapy for patients and may be beneficial to patient stratification in future clinical trials.</p>","PeriodicalId":50334,"journal":{"name":"International Journal of Biological Markers","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2022-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40057964","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
The prognostic value of aspartate beta-hydroxylase in early breast cancer. 天冬氨酸-羟化酶在早期乳腺癌中的预后价值。
IF 2 4区 医学
International Journal of Biological Markers Pub Date : 2022-09-01 Epub Date: 2022-06-20 DOI: 10.1177/03936155221108412
Paola Barboro, Alessandra Rubagotti, Silvia Poddine, Federica Grillo, Luca Mastracci, Francesco Boccardo
{"title":"The prognostic value of aspartate beta-hydroxylase in early breast cancer.","authors":"Paola Barboro,&nbsp;Alessandra Rubagotti,&nbsp;Silvia Poddine,&nbsp;Federica Grillo,&nbsp;Luca Mastracci,&nbsp;Francesco Boccardo","doi":"10.1177/03936155221108412","DOIUrl":"https://doi.org/10.1177/03936155221108412","url":null,"abstract":"Purpose Aspartate beta-hydroxylase (ASPH) is a transmembrane protein involved in cancer progression, which has been shown to imply a worse prognosis in several solid tumors. The aim of the present study was to further investigate the prognostic value of ASPH in early breast cancer. Methods ASPH expression was investigated through immunohistochemistry in a cohort of 153 breast cancer patients with long-term follow-up, and correlated with clinical–pathological features plus all-cause and breast-cancer-specific mortality. Appropriate statistics were utilized. Results ASPH negatively correlated with all-cause and breast-cancer-specific mortality. Conclusions The results of this cohort study support the prognostic value of ASPH in early breast cancer.","PeriodicalId":50334,"journal":{"name":"International Journal of Biological Markers","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2022-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40105007","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Who with suspected prostate cancer can benefit from Proclarix after multiparametric magnetic resonance imaging? 多参数磁共振成像后,哪些前列腺癌疑似患者可以从Proclarix获益?
IF 2 4区 医学
International Journal of Biological Markers Pub Date : 2022-06-01 Epub Date: 2022-02-24 DOI: 10.1177/03936155221081537
Juan Morote, Miriam Campistol, Lucas Regis, Anna Celma, Inés de Torres, Maria E Semidey, Sarai Roche, Richard Mast, Anna Santamaria, Jacques Planas, Enrique Trilla
{"title":"Who with suspected prostate cancer can benefit from Proclarix after multiparametric magnetic resonance imaging?","authors":"Juan Morote,&nbsp;Miriam Campistol,&nbsp;Lucas Regis,&nbsp;Anna Celma,&nbsp;Inés de Torres,&nbsp;Maria E Semidey,&nbsp;Sarai Roche,&nbsp;Richard Mast,&nbsp;Anna Santamaria,&nbsp;Jacques Planas,&nbsp;Enrique Trilla","doi":"10.1177/03936155221081537","DOIUrl":"https://doi.org/10.1177/03936155221081537","url":null,"abstract":"<p><p>Proclarix is a new blood-based test to assess the likelihood of clinically significant prostate cancer (csPCa) defined as <u>></u>2 grade group. In this study, we analyzed whether Proclarix and PSA density (PSAD) could improve the selection of candidates for prostate biopsy after multiparametric magnetic resonance imaging (mpMRI). Proclarix and PSAD were assessed in 567 consecutive men with suspected PCa in whom pre-biopsy 3 Tesla mpMRI, scoring with Prostate Imaging-Report and Data System (PI-RADS) v.2, and guided and/or systematic biopsies were performed. Proclarix and PSAD thresholds having csPCa sensitivity over 90% were found at 10% and 0.07 ng/(mL*cm<sup>3</sup>), respectively. Among 100 men with negative mpMRI (PI-RADS <3), csPCa was detected in 6 cases, which would have been undetected if systematic biopsies were avoided. However, Proclarix suggested performing a biopsy on 70% of men with negative mpMRI. In contrast, PSAD only detected 50% of csPCa and required 71% of prostate biopsies. In 169 men with PI-RADS 3, Proclarix avoided 21.3% of prostate biopsies and detected all 25 cases of csPCa, while PSAD avoided 26.3% of biopsies, but missed 16% of csPCa. In 190 men with PI-RADS 4 and 108 with PI-RADS 5, Proclarix avoided 12.1% and 5.6% of prostate biopsies, but missed 4.8% and 1% of csPCa, respectively. PSAD avoided 18.4% and 9.3% of biopsies, but missed 11.4% and 4.2% csPCa, respectively. We conclude that Proclarix outperformed PSAD in the selection of candidates for prostate biopsy, especially in men with PI-RADS <u><</u>3.</p>","PeriodicalId":50334,"journal":{"name":"International Journal of Biological Markers","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2022-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39811318","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Clinicopathological significance of DAPK gene promoter hypermethylation in non-small cell lung cancer: A meta-analysis. 非小细胞肺癌中DAPK基因启动子超甲基化的临床病理意义:一项荟萃分析
IF 2 4区 医学
International Journal of Biological Markers Pub Date : 2022-03-01 Epub Date: 2021-12-22 DOI: 10.1177/17246008211067552
Zhimao Chen, Yu Fan, Xiangzheng Liu, Xueqian Shang, Kang Qi, Shijie Zhang
{"title":"Clinicopathological significance of DAPK gene promoter hypermethylation in non-small cell lung cancer: A meta-analysis.","authors":"Zhimao Chen,&nbsp;Yu Fan,&nbsp;Xiangzheng Liu,&nbsp;Xueqian Shang,&nbsp;Kang Qi,&nbsp;Shijie Zhang","doi":"10.1177/17246008211067552","DOIUrl":"https://doi.org/10.1177/17246008211067552","url":null,"abstract":"<p><strong>Background: </strong>Death-associated protein kinase (DAPK) has a strong function of tumor suppression involving apoptosis regulation, autophagy, and metastasis inhibition. Hypermethylation of CpG islands in DAPK gene promoter region is one of the important ways to inactivate this tumor suppressor gene, which might promote lung carcinogenesis. However, the clinicopathological significance of the DAPK promoter hypermethylation in lung cancer remains unclear. In this study, we performed a meta-analysis trying to estimate the clinicopathological significance of DAPK promoter hypermethylation in non-small cell lung cancer (NSCLC).</p><p><strong>Methods: </strong>A detailed literature search for publications relevant to DAPK gene promoter methylation and NSCLC was made in PubMed, Embase, Cochrane Library, Web of Science, China National Knowledge Infrastructure, CSTJ, Wanfang databases, and SinoMed (CBM). The random-effects model and fixed-effects model were utilized to pool the relative ratio based on the heterogeneity test in the meta-analysis.</p><p><strong>Results: </strong>A total of 41 studies with 3348 patients were included. The frequency of DAPK methylation was significantly higher in NSCLC than in non-malignant control (odds ratio (OR) = 6.88, 95% confidence interval (CI):  4.17-11.35, <i>P</i> < 0.00001). The pooled results also showed that DAPK gene promoter hypermethylation was significantly associated with poor prognosis for overall survival in patients with NSCLC (hazard ratio: 1.23, 95% CI:1.01-1.52, <i>P</i> = 0.04). Moreover, DAPK gene promoter hypermethylation was significantly associated with squamous cell carcinoma (OR: 1.25, 95% CI: 1.01-1.54, <i>P</i> = 0.04) and smoking behavior (OR: 1.42, 95% CI: 1.04-1.93, <i>P</i> = 0.03) but not with TNM stage, tumor differentiation, age, or gender.</p><p><strong>Conclusion: </strong>DAPK promoter hypermethylation might be a candidate diagnostic and prognostic tumor marker for NSCLC.</p>","PeriodicalId":50334,"journal":{"name":"International Journal of Biological Markers","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2022-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39747199","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Estimation of associations between MMP9 gene polymorphisms and breast cancer: Evidence from a meta-analysis. 估计MMP9基因多态性与乳腺癌之间的关系:来自荟萃分析的证据。
IF 2 4区 医学
International Journal of Biological Markers Pub Date : 2022-03-01 Epub Date: 2022-02-14 DOI: 10.1177/17246008221076145
Cunye Yan, Chenyu Sun, Dengwei Lu, Tianming Zhao, Xiuxiu Ding, Irma Zamir, Mi Tang, Cong Shao, Fan Zhang
{"title":"Estimation of associations between MMP9 gene polymorphisms and breast cancer: Evidence from a meta-analysis.","authors":"Cunye Yan,&nbsp;Chenyu Sun,&nbsp;Dengwei Lu,&nbsp;Tianming Zhao,&nbsp;Xiuxiu Ding,&nbsp;Irma Zamir,&nbsp;Mi Tang,&nbsp;Cong Shao,&nbsp;Fan Zhang","doi":"10.1177/17246008221076145","DOIUrl":"https://doi.org/10.1177/17246008221076145","url":null,"abstract":"<p><p>Matrix metalloproteinases (MMPs) are a family of zinc-dependent endopeptidases, which play critical roles in cancer progression and metastasis. In recent years, many researchers have been studying the relationship between MMP9 and breast cancer. However, it still remains indecisive. Therefore, we conducted a meta-analysis to draw more accurate conclusions. A total of 21 relevant documents were retrieved, including 25 case-control studies. We quantitatively analyzed the data obtained. To clarify the relationship between MMP9 polymorphism and breast cancer susceptibility under different conditions, we also made a further subgroup analysis for each locus. In summary, we discovered that MMP9 rs3918242 rendered an increased risk for breast cancer, especially among Iranians and Indians. MMP9 rs3787268 could be a protective factor. MMP9 rs17576 and MMP9 rs2250889 have no association with breast cancer risk.</p>","PeriodicalId":50334,"journal":{"name":"International Journal of Biological Markers","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2022-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39793217","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 10
CircFOXP1: A novel serum diagnostic biomarker for non-small cell lung cancer. CircFOXP1:一种新的非小细胞肺癌血清诊断生物标志物。
IF 2 4区 医学
International Journal of Biological Markers Pub Date : 2022-03-01 Epub Date: 2022-01-24 DOI: 10.1177/17246008211073151
Yirong Luo, Qichao Zhang, Bo Lv, Yanyan Shang, Juan Li, Lina Yang, Zhiwu Yu, Kai Luo, Xiaoyan Deng, Ling Min, Ting Zhu
{"title":"CircFOXP1: A novel serum diagnostic biomarker for non-small cell lung cancer.","authors":"Yirong Luo,&nbsp;Qichao Zhang,&nbsp;Bo Lv,&nbsp;Yanyan Shang,&nbsp;Juan Li,&nbsp;Lina Yang,&nbsp;Zhiwu Yu,&nbsp;Kai Luo,&nbsp;Xiaoyan Deng,&nbsp;Ling Min,&nbsp;Ting Zhu","doi":"10.1177/17246008211073151","DOIUrl":"https://doi.org/10.1177/17246008211073151","url":null,"abstract":"<p><strong>Background: </strong>Emerging evidence suggests that circular RNAs (circRNAs) were aberrantly expressed in the patients of non-small cell lung cancer (NSCLC). This study aims to evaluate the diagnostic value of potential serum biomarker in circRNAs.</p><p><strong>Methods: </strong>Serum circRNAs were extracted and purified by RNA isolated kit and identified by quantitative real time-polymerase chain reaction (qRT-PCR) assay. We then performed a receiver operating characteristic (ROC) curve to estimate the diagnostic efficacy. The relationship between circRNA and clinic characteristics of patients was analyzed by SPSS 25.0. Univariate and multivariate analyses were also used to evaluate its diagnostic capability. The mechanism of circFOXP1 was further excavated by bioinformatics analysis.</p><p><strong>Results: </strong>By performing qRT-PCR assay, we identified that circFOXP1 (hsa_circ_0008234) and conventional tumor markers (carcinoembryonic antigen (CEA) and cytokeratin fragment 21-1 (CYFRA21-1)) were all significantly overexpressed in the serum of patients with NSCLC when compared with healthy controls (<i>P</i> < 0.05). While the ROC curves analysis demonstrated that area under the curve of circFOXP1 was obviously superior to CEA and CYFRA21-1, which exerted more diagnostic advantage. Univariate and multivariate analyses revealed that serum circFOXP1 was an independent diagnostic molecule, and was significantly correlated with T stage and lymphatic metastasis in NSCLC (<i>P</i> < 0.05). Mechanistically, circFOXP1 might target hsa-miR-370-3p and hsa-miR-18a-5p, and be involved in vascular endothelial growth factor signaling pathways to regulate proliferative and metastasis processes.</p><p><strong>Conclusion: </strong>Our results highlight the preferable diagnostic potential of serum circFOXP1 in NSCLC.</p>","PeriodicalId":50334,"journal":{"name":"International Journal of Biological Markers","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2022-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39716551","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 7
A functional polymorphism within the distal promoter of RUNX3 confers risk of colorectal cancer. RUNX3远端启动子内的功能多态性会增加结直肠癌的风险。
IF 2 4区 医学
International Journal of Biological Markers Pub Date : 2022-03-01 Epub Date: 2022-01-24 DOI: 10.1177/17246008211073342
Huiping Wang, Jin Wang, Danhua Li, Zhansheng Zhu, Dongsheng Pei
{"title":"A functional polymorphism within the distal promoter of <i>RUNX3</i> confers risk of colorectal cancer.","authors":"Huiping Wang,&nbsp;Jin Wang,&nbsp;Danhua Li,&nbsp;Zhansheng Zhu,&nbsp;Dongsheng Pei","doi":"10.1177/17246008211073342","DOIUrl":"https://doi.org/10.1177/17246008211073342","url":null,"abstract":"<p><strong>Background: </strong>Accumulating evidence has indicated that runt-related transcription factor 3 (<i>RUNX3</i>) gene polymorphism (rs7528484) is associated with an alimentary system cancer risk. However, the role of rs7528484 in colorectal cancer is still unclear. The present study aimed to explore the association between rs7528484 and colorectal cancer susceptibility in a Chinese Han population.</p><p><strong>Material and methods: </strong>We firstly investigated the effect of the polymorphism rs7528484 in distal promoter of <i>RUNX3</i> polymorphism on colorectal cancer risk in a Chinese Han population comprising 427 colorectal cancer patients and 503 controls. We then carried out a phenotype-genotype association analysis to validate its influence on the adjacent gene <i>RUNX3</i>.</p><p><strong>Results: </strong>Logistic regression analysis demonstrated that the T allele of rs7528484 was significantly associated with an increased risk for colorectal cancer occurrence in our case-control study (odds ratio = 1.33; 95% confidence interval = 1.09-1.65; <i>P</i> = 0.005). In stratified analysis, the susceptibility of colorectal cancer in the T allele carriers increased among the smokers, III and IV tumor stage, and at the rectum. Furthermore, the T allele was significantly correlated with lower expression of <i>RUNX3</i> in vitro.</p><p><strong>Conclusion: </strong>In summary, the current case-control and genotype-phenotype study provides convincing evidence that functional <i>RUNX3</i> polymorphism (rs7528484) is related to colorectal cancer risk and is a plausible marker for the prediction of colorectal cancer.</p>","PeriodicalId":50334,"journal":{"name":"International Journal of Biological Markers","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2022-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39855589","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
System analysis of VEGFA in renal cell carcinoma: The expression, prognosis, gene regulation network and regulation targets. 肾细胞癌中VEGFA的系统分析:表达、预后、基因调控网络及调控靶点。
IF 2 4区 医学
International Journal of Biological Markers Pub Date : 2022-03-01 Epub Date: 2021-12-06 DOI: 10.1177/17246008211063501
Yongli Situ, Qinying Xu, Li Deng, Yan Zhu, Ruxiu Gao, Lei Lei, Zheng Shao
{"title":"System analysis of <i>VEGFA</i> in renal cell carcinoma: The expression, prognosis, gene regulation network and regulation targets.","authors":"Yongli Situ,&nbsp;Qinying Xu,&nbsp;Li Deng,&nbsp;Yan Zhu,&nbsp;Ruxiu Gao,&nbsp;Lei Lei,&nbsp;Zheng Shao","doi":"10.1177/17246008211063501","DOIUrl":"https://doi.org/10.1177/17246008211063501","url":null,"abstract":"<p><strong>Background: </strong>VEGFA is one of the most important regulators of angiogenesis and plays a crucial role in cancer angiogenesis and progression. Recent studies have highlighted a relationship between <i>VEGFA</i> expression and renal cell carcinoma occurrence. However, the expression level, gene regulation network, prognostic value, and target prediction of <i>VEGFA</i> in renal cell carcinoma remain unclear. Therefore, system analysis of the expression, gene regulation network, prognostic value, and target prediction of <i>VEGFA</i> in patients with renal cell carcinoma is of great theoretical significance as there is a clinical demand for the discovery of new renal cell carcinoma treatment targets and strategies to further improve renal cell carcinoma treatment efficacy.</p><p><strong>Methods: </strong>This study used multiple free online databases, including cBioPortal, TRRUST, GeneMANIA, GEPIA, Metascape, UALCAN, LinkedOmics, Metascape, and TIMER for the abovementioned analysis.</p><p><strong>Results: </strong><i>VEGFA</i> was upregulated in patients with kidney renal clear cell carcinoma (KIRC) and kidney chromophobe (KICH), and downregulated in patients with kidney renal papillary cell carcinoma (KIRP). Moreover, genetic alterations of <i>VEGFA</i> were found in patients with renal cell carcinoma as follows: 4% (KIRC), 8% (KICH), and 4% (KIRP). The promoter methylation of <i>VEGFA</i> was lower and higher in patients with clinical stages of KIRC and stage 1 KIRP, respectively. <i>VEGFA</i> expression significantly correlated with KIRC and KIRP pathological stages. Furthermore, patients with KICH and KIRP having low <i>VEGFA</i> expression levels had a longer survival than those having high <i>VEGFA</i> expression levels. <i>VEGFA</i> and its neighboring genes functioned in the regulation of protein methylation and glycosylation, as well as muscle fiber growth and differentiation in patients with renal cell carcinoma. Gene Ontology enrichment analysis revealed that the functions of <i>VEGFA</i> and its neighboring genes in patients with renal cell carcinoma are mainly related to cell adhesion molecule binding, catalytic activity, acting on RNA, ATPase activity, actin filament binding, protease binding, transcription coactivator activity, cysteine-type peptidase activity, and calmodulin binding. Transcription factor targets of <i>VEGFA</i> and its neighboring genes in patients with renal cell carcinoma were found: HIF1A, TFAP2A, and ESR1 in KIRC; STAT3, NFKB1, and HIPK2 in KICH; and FOXO3, TFAP2A, and ETS1 in KIRP. We further explored the <i>VEGFA</i>-associated kinase (ATM in KICH as well as CDK1 and AURKB in KIRP) and <i>VEGFA</i>-associated microRNA (miRNA) targets (MIR-21 in KICH as well as MIR-213, MIR-383, and MIR-492 in KIRP). Furthermore, the following genes had the strongest correlation with <i>VEGFA</i> expression in patients with renal cell carcinoma: <i>NOTCH4</i>, <i>GPR4</i>, and <i>TRIB2</i> in KIRC; <i>CKMT2</i>,","PeriodicalId":50334,"journal":{"name":"International Journal of Biological Markers","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2022-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39573907","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 14
Meta-analysis of the diagnostic performance of serum carbohydrate antigen 19-9 for the detection of gallbladder cancer. 血清碳水化合物抗原19-9对胆囊癌诊断价值的meta分析。
IF 2 4区 医学
International Journal of Biological Markers Pub Date : 2022-03-01 Epub Date: 2022-01-04 DOI: 10.1177/17246008211068866
Xiaolei Zhou
{"title":"Meta-analysis of the diagnostic performance of serum carbohydrate antigen 19-9 for the detection of gallbladder cancer.","authors":"Xiaolei Zhou","doi":"10.1177/17246008211068866","DOIUrl":"https://doi.org/10.1177/17246008211068866","url":null,"abstract":"<p><strong>Introduction: </strong>Carbohydrate antigen 19-9 (CA19-9) is a well-studied tumor marker, yet its diagnostic value for gallbladder cancer remains unclear. The present meta-analysis was conducted to validate the role of serum CA19-9 for the detection of gallbladder cancer.</p><p><strong>Methods: </strong>A systematic search of digital databases was conducted, complemented by additional hand-searching. Studies that reported serum CA19-9 for the differentiation of gallbladder cancer cases from non-gallbladder cancer controls were considered eligible.</p><p><strong>Results: </strong>A total of 27 studies involving 4300 subjects were included. The pooled sensitivity, specificity, and area under the curve in diagnosing gallbladder cancer were 0.70 (95% confidence interval (CI): 0.63-0.76), 0.92 (95% CI: 0.88-0.94), and 0.89 (95% CI: 0.86-0.92), respectively. The pooled positive likelihood rate, negative likelihood rate, and diagnostic odds rate were 8.30 (95% CI: 5.84-11.69), 0.33 (95% CI: 0.27-0.41), and 25.13 (95% CI: 5.83-39.89), respectively. Meta-regression analysis revealed that there was significantly lower sensitivity (0.69, 95% CI: 0.61-0.77) and specificity (0.91, 95% CI: 0.87-0.95) when CA19-9 was used for the differentiation of gallbladder cancer cases from benign biliary diseases. A better specificity of 0.93 (95% CI: 0.90-0.96) was reached in the setting of a sample size ≥100.</p><p><strong>Conclusions: </strong>Serum CA19-9 can be a potential candidate marker for the detection of gallbladder cancer, which maintains moderate sensitivity and good specificity. Attention should be paid to the control type and sample size, which may affect its diagnostic accuracy. Also, results should be interpreted with caution due to significant heterogeneity primarily caused by different thresholds between included studies.</p>","PeriodicalId":50334,"journal":{"name":"International Journal of Biological Markers","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2022-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39660368","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
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