Fernando Huancas, Aníbal Coronel, Rodolfo Vidal, Stefan Berres, Humberto Brito
{"title":"A mathematical model of flavescence dorée in grapevines by considering seasonality.","authors":"Fernando Huancas, Aníbal Coronel, Rodolfo Vidal, Stefan Berres, Humberto Brito","doi":"10.3934/mbe.2024332","DOIUrl":"https://doi.org/10.3934/mbe.2024332","url":null,"abstract":"<p><p>This paper presents a mathematical model to describe the spread of flavescence dorée, a disease caused by the bacterium <i>Candidatus Phytoplasma vitis</i>, which is transmitted by the insect vector <i>Scaphoideus titanus</i> in grapevine crops. The key contribution of this work is the derivation of conditions under which positive periodic solutions exist. These conditions are based on the assumption that key factors such as recruitment rates, disease transmission, and vector infectivity vary periodically, thus reflecting seasonal changes. The existence of these periodic solutions is proven using the degree theory, and numerical examples are provided to support the theoretical findings. This model aims to enhance the understanding of the epidemiological dynamics of flavescence dorée and contribute to developing better control strategies to manage the disease in grapevines.</p>","PeriodicalId":49870,"journal":{"name":"Mathematical Biosciences and Engineering","volume":"21 11","pages":"7554-7581"},"PeriodicalIF":2.6,"publicationDate":"2024-11-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142856503","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Ezio Venturino, Francesco Cantaloni, Luciana Tavella, Silvia Moraglio, Francesco Tortorici
{"title":"Mathematical modeling of the parasitism and hyperparasitism increase on <i>Halyomorpha halys</i> eggs in a five-year survey in Northern Italy.","authors":"Ezio Venturino, Francesco Cantaloni, Luciana Tavella, Silvia Moraglio, Francesco Tortorici","doi":"10.3934/mbe.2024330","DOIUrl":"https://doi.org/10.3934/mbe.2024330","url":null,"abstract":"<p><p>The invasive stink bug <i>Halyomorpha halys</i> has become an important pest of many crops, causing severe economic losses to farmers. Control of the pest mainly relies on multiple applications of broad-spectrum insecticides, undermining the integrated pest management programs and causing secondary pest outbreaks. In the native area, egg parasitoids are the main natural enemies of <i>H. halys</i>, among which <i>Trissolcus japonicus</i> is considered the predominant species. In Italy, adventive populations of <i>T. japonicus</i> and <i>Trissolcus mitsukurii</i>, another egg parasitoid of <i>H. halys</i> in Japan, have established themselves. These two species, together with the indigenous <i>Anastatus bifasciatus</i>, are capable of attacking the eggs of the exotic host. Focusing on the situation in Northern Italy, where also the hyperparasitoid <i>Acroclisoides sinicus</i> is present, a discrete-time model is developed for the simulation of the pest evolution. It is based on actual field data collected over a timespan of five years. The simulations indicate that egg parasitoid by themselves do not suppress populations to non-pest levels, but can play an important role in reducing their impact. Both the data from the five-year surveys and those available in the literature are used in the model. It has some limitations in the fact that climatic conditions were not considered, while more accurate simulations could be performed with additional collection of field data, which at the moment are based on partial field observations not sampled at the same sites.</p>","PeriodicalId":49870,"journal":{"name":"Mathematical Biosciences and Engineering","volume":"21 11","pages":"7501-7529"},"PeriodicalIF":2.6,"publicationDate":"2024-11-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142856536","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The impact of immune cell interactions on virus quasi-species formation.","authors":"Ali Moussaoui, Vitaly Volpert","doi":"10.3934/mbe.2024331","DOIUrl":"https://doi.org/10.3934/mbe.2024331","url":null,"abstract":"<p><p>The process of viral infection spreading in tissues was influenced by various factors, including virus replication within host cells, transportation, and the immune response. Reaction-diffusion systems provided a suitable framework for examining this process. In this work, we studied a nonlocal reaction-diffusion system of equations that modeled the distribution of viruses based on their genotypes and their interaction with the immune response. It was shown that the infection may persist at a certain level alongside a chronic immune response, exhibiting spatially uniform or oscillatory behavior. Finally, the immune cells may become entirely depleted, leading to a high viral load persisting in the tissue. Numerical simulations were employed to elucidate the nonlinear dynamics and pattern formation inherent in the nonlocal model.</p>","PeriodicalId":49870,"journal":{"name":"Mathematical Biosciences and Engineering","volume":"21 11","pages":"7530-7553"},"PeriodicalIF":2.6,"publicationDate":"2024-11-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142856543","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Cooperation in the face of crisis: effect of demographic noise in collective-risk social dilemmas.","authors":"José F Fontanari","doi":"10.3934/mbe.2024329","DOIUrl":"https://doi.org/10.3934/mbe.2024329","url":null,"abstract":"<p><p>In deciding whether to contribute to a public good, people often face a social dilemma known as the tragedy of the commons: either bear the cost of promoting the collective welfare, or free-ride on the efforts of others. Here, we study the dynamics of cooperation in the context of the threshold public goods games, in which groups must reach a cumulative target contribution to prevent a potential disaster, such as an environmental crisis or social unrest, that could result in the loss of all private wealth. The catch is that the crisis may never materialize, and the investment in the public good is lost. Overall, higher risk of loss promotes cooperation, while larger group size tends to undermine it. For most parameter settings, free-riders (defectors) cannot be eliminated from the population, leading to a coexistence equilibrium between cooperators and defectors for infinite populations. However, this equilibrium is unstable under the effect of demographic noise (finite population), since the cooperator-only and defector-only states are the only absorbing states of the stochastic dynamics. We use simulations and finite-size scaling to show that cooperators eventually die off and derive scaling laws for the transient lifetimes or half-lives of the coexistence metastable state. We find that for high risk, the half-life of cooperators increases exponentially with population size, while for low risk, it decreases exponentially with population size. At the risk threshold, where the coexistence regime appears in a discontinuous manner, the half-life increases with a power of the population size.</p>","PeriodicalId":49870,"journal":{"name":"Mathematical Biosciences and Engineering","volume":"21 11","pages":"7480-7500"},"PeriodicalIF":2.6,"publicationDate":"2024-11-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142856510","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"A stage structured model for mosquito suppression with immigration.","authors":"Mugen Huang, Zifeng Wang, Zixin Nie","doi":"10.3934/mbe.2024328","DOIUrl":"https://doi.org/10.3934/mbe.2024328","url":null,"abstract":"<p><p>The incompatible insect technique based on <i>Wolbachia</i> is a promising alternative to control mosquito-borne diseases, such as dengue fever, malaria, and Zika, which drives wild female mosquitoes sterility through a mechanism cytoplasmic incompatibility. A successful control program should be able to withstand the perturbation induced by the immigration of fertilized females from surrounding uncontrolled areas. In this paper, we formulated a system of delay differential equations, including larval and adult stages, interfered by <i>Wolbachia</i>-infected males. We classified the release number of infected males and immigration number of fertile females, to ensure that the system displays globally asymptotically stable or bistable dynamics. The immigration of fertile females hinders the maximum possible suppression efficiency so that the wild adults cannot be reduced to a level below $ A^*_infty $. We identified the permitted most migration number to reduce the wild adults to a target level. To reduce up to $ 90% $ of wild adults in the peak season within two months, an economically viable strategy is to reduce the immigration number of wild females less than $ 0.21% $ of the carrying capacity of adults in the control area.</p>","PeriodicalId":49870,"journal":{"name":"Mathematical Biosciences and Engineering","volume":"21 11","pages":"7454-7479"},"PeriodicalIF":2.6,"publicationDate":"2024-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142856505","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Salihu S Musa, Shi Zhao, Winnie Mkandawire, Andrés Colubri, Daihai He
{"title":"An epidemiological modeling investigation of the long-term changing dynamics of the plague epidemics in Hong Kong.","authors":"Salihu S Musa, Shi Zhao, Winnie Mkandawire, Andrés Colubri, Daihai He","doi":"10.3934/mbe.2024327","DOIUrl":"https://doi.org/10.3934/mbe.2024327","url":null,"abstract":"<p><p>Identifying epidemic-driving factors through epidemiological modeling is a crucial public health strategy that has substantial policy implications for control and prevention initiatives. In this study, we employ dynamic modeling to investigate the transmission dynamics of pneumonic plague epidemics in Hong Kong from 1902 to 1904. Through the integration of human, flea, and rodent populations, we analyze the long-term changing trends and identify the epidemic-driving factors that influence pneumonic plague outbreaks. We examine the dynamics of the model and derive epidemic metrics, such as reproduction numbers, that are used to assess the effectiveness of intervention. By fitting our model to historical pneumonic plague data, we accurately capture the incidence curves observed during the epidemic periods, which reveals some crucial insights into the dynamics of pneumonic plague transmission by identifying the epidemic driving factors and quantities such as the lifespan of flea vectors, the rate of rodent spread, as well as demographic parameters. We emphasize that effective control measures must be prioritized for the elimination of fleas and rodent vectors to mitigate future plague outbreaks. These findings underscore the significance of proactive intervention strategies in managing infectious diseases and informing public health policies.</p>","PeriodicalId":49870,"journal":{"name":"Mathematical Biosciences and Engineering","volume":"21 10","pages":"7435-7453"},"PeriodicalIF":2.6,"publicationDate":"2024-10-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142856441","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Yuganthi R Liyanage, Nora Heitzman-Breen, Necibe Tuncer, Stanca M Ciupe
{"title":"Identifiability investigation of within-host models of acute virus infection.","authors":"Yuganthi R Liyanage, Nora Heitzman-Breen, Necibe Tuncer, Stanca M Ciupe","doi":"10.3934/mbe.2024325","DOIUrl":"10.3934/mbe.2024325","url":null,"abstract":"<p><p>Uncertainty in parameter estimates from fitting within-host models to empirical data limits the model's ability to uncover mechanisms of infection, disease progression, and to guide pharmaceutical interventions. Understanding the effect of model structure and data availability on model predictions is important for informing model development and experimental design. To address sources of uncertainty in parameter estimation, we used four mathematical models of influenza A infection with increased degrees of biological realism. We tested the ability of each model to reveal its parameters in the presence of unlimited data by performing structural identifiability analyses. We then refined the results by predicting practical identifiability of parameters under daily influenza A virus titers alone or together with daily adaptive immune cell data. Using these approaches, we presented insight into the sources of uncertainty in parameter estimation and provided guidelines for the types of model assumptions, optimal experimental design, and biological information needed for improved predictions.</p>","PeriodicalId":49870,"journal":{"name":"Mathematical Biosciences and Engineering","volume":"21 10","pages":"7394-7420"},"PeriodicalIF":2.6,"publicationDate":"2024-10-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142856494","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"MDRN: Multi-distillation residual network for efficient MR image super-resolution.","authors":"Liwei Deng, Jingyi Chen, Xin Yang, Sijuan Huang","doi":"10.3934/mbe.2024326","DOIUrl":"https://doi.org/10.3934/mbe.2024326","url":null,"abstract":"<p><p>Super-resolution (SR) of magnetic resonance imaging (MRI) is gaining increasing attention for being able to provide detailed anatomical information. However, current SR methods often use the complex convolutional network for feature extraction, which is difficult to train and not suitable for limited computation resources in the medical scenario. To tackle these bottlenecks, we propose a multi-distillation residual network (MDRN) for more differential feature refinement, which has a superior trade-off between reconstruction accuracy and computation cost. Specifically, a novel feature multi-distillation residual block with a contrast-aware channel attention module was designed to make the residual features more focused on low-vision information, which maximizes the power of MDRN. Comprehensive experiments demonstrate the superiority of our MDRN over state-of-the-art methods in reconstruction quality and efficiency. Our method outperforms other existing methods in peak signal-noise ratio by up to 0.44-1.82 dB in 4× scale when GPU memory and runtime are lower than in other SR methods. The source code will be available at https://github.com/Jennieyy/MDRN.</p>","PeriodicalId":49870,"journal":{"name":"Mathematical Biosciences and Engineering","volume":"21 10","pages":"7421-7434"},"PeriodicalIF":2.6,"publicationDate":"2024-10-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142856495","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Saturated lysing efficiency of CD8<sup>+</sup> cells induced monostable, bistable and oscillatory HIV kinetics.","authors":"Shilian Xu","doi":"10.3934/mbe.2024324","DOIUrl":"https://doi.org/10.3934/mbe.2024324","url":null,"abstract":"<p><p>Effector CD8<sup>+</sup> cells lyse human immunodeficiency viruses (HIV)-infected CD4<sup>+</sup> cells by recognizing a viral peptide presented by human leukocyte antigens (HLA) on the CD4<sup>+</sup> cell surface, which plays an irreplaceable role in within-host HIV clearance. Using a semi-saturated lysing efficiency of a CD8<sup>+</sup> cell, we discuss a model that captures HIV dynamics with different magnitudes of lysing rate induced by different HLA alleles. With the aid of local stability analysis and bifurcation plots, exponential interactions among CD4<sup>+</sup> cells, HIV, and CD8<sup>+</sup> cells were investigated. The system exhibited unexpectedly complex behaviors that were both mathematically and biologically interesting, for example monostability, periodic oscillations, and bistability. The CD8<sup>+</sup> cell lysing rate, the CD8<sup>+</sup> cell count, and the saturation effect were combined to determine the HIV kinetics. For a given CD8<sup>+</sup> cell count, a low CD8<sup>+</sup> cell lysing rate and a high saturation effect led to monostability to a high viral titre, and a low CD8<sup>+</sup> cell lysing rate and a low saturation effect triggered periodic oscillations; this explained why patients with a non-protective HLA allele were always associated with a high viral titer and exhibited bad infection control. On the other hand, a high CD8<sup>+</sup> cell lysing rate led to bistability and monostability to a low viral titer; this explained why protective HLA alleles are not always associated with good HIV infection outcomes. These mathematical results explain how differences in HLA alleles determine the variability in viral infection.</p>","PeriodicalId":49870,"journal":{"name":"Mathematical Biosciences and Engineering","volume":"21 10","pages":"7373-7393"},"PeriodicalIF":2.6,"publicationDate":"2024-10-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142856501","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Salman Lari, Hossein Rajabzadeh, Mohammad Kohandel, Hyock Ju Kwon
{"title":"A holistic physics-informed neural network solution for precise destruction of breast tumors using focused ultrasound on a realistic breast model.","authors":"Salman Lari, Hossein Rajabzadeh, Mohammad Kohandel, Hyock Ju Kwon","doi":"10.3934/mbe.2024323","DOIUrl":"https://doi.org/10.3934/mbe.2024323","url":null,"abstract":"<p><p>This study presented a novel approach for the precise ablation of breast tumors using focused ultrasound (FUS), leveraging a physics-informed neural network (PINN) integrated with a realistic breast model. FUS has shown significant promise in treating breast tumors by effectively targeting and ablating cancerous tissue. This technique employs concentrated ultrasonic waves to generate intense heat, effectively destroying cancerous tissue. In previous finite element method (FEM) models, the computational demands of handling extensive datasets, multiple dimensions, and discretization posed significant challenges. Our PINN-based solution operated efficiently in a mesh-free domain, achieving remarkable accuracy with significantly reduced computational demands, compared to conventional FEM techniques. Additionally, employing PINN for estimating partial differential equations (PDE) solutions can notably decrease the enormous number of discretized elements needed. The model employed a bowl-shaped acoustic transducer to focus ultrasound waves accurately on the tumor location. The simulation results offered detailed insights into each step of the FUS treatment process, including the generation of acoustic waves, the targeting of the tumor, and the subsequent heating and ablation of cancerous tissue. By applying a 3.8 nm displacement amplitude of transducer input pulse at a frequency of 1.1 MHz for 1 second, the temperature at the focal point elevated to 38.4 ℃, followed by another 90 seconds of cooling time, which resulted in significant necrosis of the tumor tissues. Validation of the PINN model's accuracy was conducted through FEM analysis, aligning closely with real-world FUS therapy scenarios. This innovative model provided physicians with a predictive tool to estimate the necrosis of tumor tissue, facilitating the customization of FUS treatment strategies for individual breast cancer patients.</p>","PeriodicalId":49870,"journal":{"name":"Mathematical Biosciences and Engineering","volume":"21 10","pages":"7337-7372"},"PeriodicalIF":2.6,"publicationDate":"2024-10-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142856427","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}