2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI)最新文献_第10页

Split-Bregman-based group-sparse reconstruction of multidimensional spectroscopic imaging data 基于split - bregman的多维光谱成像数据群稀疏重建

2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI) Pub Date : 2014-07-31 DOI: 10.1109/ISBI.2014.6867955

Brian L. Burns, N. Wilson, M. Thomas

引用次数: 0

Automatic vessel tree structure extraction by growing minimal paths and a mask 通过生长最小路径和掩模自动提取血管树结构

2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI) Pub Date : 2014-07-31 DOI: 10.1109/ISBI.2014.6867992

Da Chen, L. Cohen

引用次数: 3

Multicycle non-local means denoising of cardiac image sequences 多周期非局部方法对心脏图像序列进行去噪

2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI) Pub Date : 2014-07-31 DOI: 10.1109/ISBI.2014.6868059

John M. Batikian, M. Liebling

{"title":"Multicycle non-local means denoising of cardiac image sequences","authors":"John M. Batikian, M. Liebling","doi":"10.1109/ISBI.2014.6868059","DOIUrl":"https://doi.org/10.1109/ISBI.2014.6868059","url":null,"abstract":"Non-local means (NLM) noise reduction is effective yet computationally intensive, since each output pixel is a weighted average of all input pixels. Most implementations therefore restrict the scope of the average to a smaller neighborhood around each pixel, which limits the method's full potential. Here we propose to apply NLM to reduce the noise in fluorescence microscopy image sequences of the beating heart, whose quasi-repeatable pattern produces multiple realizations of similar image patches in different heart beats. We propose to restrict the averaging from the entire sequence to a subset of globally similar frames across multiple heart beats. Using a high-SNR brightfield microscopy image sequence of a beating embryonic zebrafish heart that we artificially corrupt with noise, we illustrate the benefits of selecting non-adjacent frames rather than the immediate temporal neighborhood in the vicinity of the pixel being denoised. The image quality of our NLM approach is also better than that obtained by directly computing the sample median of matching frames over multiple heartbeats, a commonly used method. Finally, we demonstrate the applicability of our proposed scheme to low-intensity fluorescence images of the embryonic zebrafish heart.","PeriodicalId":440405,"journal":{"name":"2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI)","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-07-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"132302742","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 3

Graph-based optimal multi-surface segmentation with a star-shaped prior: Application to the segmentation of the optic disc and cup 星形先验的基于图的最优多面分割:视盘和视杯分割的应用

2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI) Pub Date : 2014-07-31 DOI: 10.1109/ISBI.2014.6867924

Junjie Bai, Mohammad Saleh Miri, Yinxiao Liu, P. Saha, M. Garvin, Xiaodong Wu

{"title":"Graph-based optimal multi-surface segmentation with a star-shaped prior: Application to the segmentation of the optic disc and cup","authors":"Junjie Bai, Mohammad Saleh Miri, Yinxiao Liu, P. Saha, M. Garvin, Xiaodong Wu","doi":"10.1109/ISBI.2014.6867924","DOIUrl":"https://doi.org/10.1109/ISBI.2014.6867924","url":null,"abstract":"A novel graph-based optimal segmentation method which can simultaneously segment multiple star-shaped surfaces is presented in this paper. Minimum and maximum surface distance constraints can be enforced between different surfaces. In addition, the segmented surfaces are ensured to be smooth by incorporating surface smoothness constraints which limit the variation between adjacent surface voxels. A consistent digital ray system is utilized to make sure the segmentation result is star-shaped and consistent, without interpolating image as required by other methods. To the best of our knowledge, the concept of consistent digital rays is for the first time introduced into the field of medical imaging. The problem is formulated as an MRF optimization problem which can be efficiently and exactly solved by computing a single min s-t cut in an appropriately constructed graph. The method is applied to the segmentation of the optic disc and cup on 70 registered fundus and SD-OCT images from glaucoma patients. The result shows improved accuracy by applying the proposed method (versus using a classification-based approach).","PeriodicalId":440405,"journal":{"name":"2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI)","volume":"46 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-07-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"133755853","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 13

A statistical analysis of spatial clustering along cell filaments using Ripley's K function 利用Ripley's K函数对细胞丝空间聚类的统计分析

2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI) Pub Date : 2014-07-31 DOI: 10.1109/ISBI.2014.6867928

Mariña López-Yunta, T. Lagache, J. Santi-Rocca, P. Bastin, J. Olivo-Marin

引用次数: 4

Cell counting based on local intensity maxima grouping for in-situ microscopy 基于局部强度最大分组的原位显微镜细胞计数

2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI) Pub Date : 2014-07-31 DOI: 10.1109/ISBI.2014.6868126

L. Rojas, G. Martinez, T. Scheper

引用次数: 2

A ranking-based lung nodule image classification method using unlabeled image knowledge 基于无标记图像知识的分级肺结节图像分类方法

2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI) Pub Date : 2014-07-31 DOI: 10.1109/ISBI.2014.6868129

Fan Zhang, Yang Song, Weidong (Tom) Cai, Yun Zhou, M. Fulham, S. Eberl, S. Shan, D. Feng

引用次数: 19

Generation of ultra-realistic synthetic echocardiographic sequences 生成超逼真的合成超声心动图序列

2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI) Pub Date : 2014-07-31 DOI: 10.1109/ISBI.2014.6867812

M. D. Craene, M. Alessandrini, P. Allain, S. Marchesseau, Irina Wächter-Stehle, J. Weese, E. Saloux, H. Morales, R. Cuingnet, H. Delingette, Maxime Sermesant, O. Bernard, J. D’hooge

引用次数: 6

Segmentation of cell nuclei in 3D microscopy images based on level set deformable models and convex minimization 基于水平集变形模型和凸最小化的三维显微图像细胞核分割

2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI) Pub Date : 2014-07-31 DOI: 10.1109/ISBI.2014.6867951

Jan-Philip Bergeest, K. Rohr

引用次数: 6

A 3D model with shape prior information for biological structures reconstruction using multiple-angle total internal reflection fluorescence microscopy 利用多角度全内反射荧光显微镜重建具有形状先验信息的三维生物结构模型

2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI) Pub Date : 2014-07-31 DOI: 10.1109/ISBI.2014.6867944

Emmanuel Soubies, L. Blanc-Féraud, S. Schaub, G. Aubert

{"title":"A 3D model with shape prior information for biological structures reconstruction using multiple-angle total internal reflection fluorescence microscopy","authors":"Emmanuel Soubies, L. Blanc-Féraud, S. Schaub, G. Aubert","doi":"10.1109/ISBI.2014.6867944","DOIUrl":"https://doi.org/10.1109/ISBI.2014.6867944","url":null,"abstract":"We propose a new model for the reconstruction of biological structures using Multiple-Angle Total Internal Reflection Fluorescence Microscopy (MA-TIRFM). This recent microscopy technique allows the visualization of sub-cellular structures around the plasma membrane which is of fundamental importance in the comprehension of exchanges mechanisms of the cell. We present a 3D reconstruction method based on a shape prior information on the observed structures and robust to shot noise and background fluorescence. A novelty with respect to the state of the art is to propose a method allowing the recovery of multiple objects aligned along the axial axis. The optimization problem can be formulated as a minimization problem where both the number of objects in the model and their parameters have to be estimated. This difficult combinatorial optimization problem is tackled by using a Marked Point Process approach which allows modelling interactions between the objects in order to regularize the inverse problem. Finally, performances of the proposed method are evaluated on synthetic data and real data.","PeriodicalId":440405,"journal":{"name":"2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI)","volume":"11 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-07-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"132930862","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 7