{"title":"Detection of Pre-stage of Epileptic Seizure by Exploiting Temporal Correlation of EMD Decomposed EEG Signals","authors":"M. Parvez, M. Paul, M. Antolovich","doi":"10.12720/JOMB.4.2.110-116","DOIUrl":"https://doi.org/10.12720/JOMB.4.2.110-116","url":null,"abstract":"Epilepsy is one of the common neurological disorders characterized by a sudden and recurrent malfunction of the brain that is termed \"seizure\", affecting over 50 million individuals worldwide. The Electroencephalogram (EEG) is the most influential technique in detection of epileptic seizures. In recent years, many research works have been devoted to the detection of epileptic seizures based on analysis of EEG signals. Despite remarkable work on seizure detection, there is no generic seizure detection scheme which performs reasonably well for different patients and different brain locations. In this paper we present a generic approach for feature extraction of preictal (pre-stage of seizure onset) and interictal (period between seizures) EEG signals using empirical mode decomposition (EMD) along with discrete cosine transformation (DCT) by exploit temporal correlation for detection of preictal phase of epileptic seizure. Then least square support vector machine is applied on the features for classifications. Results demonstrate that our proposed method outperforms the state-of-the-art methods in terms of sensitivity, specificity and accuracy to classify preictal and interictal EEG signals to the benchmark dataset extracted from different brain locations of different patients. ","PeriodicalId":437476,"journal":{"name":"Journal of medical and bioengineering","volume":"12 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2015-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"127628121","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Bioeconomy: Pectinases Purification and Application of Fermented Waste from Thermomyces Lanuginosus","authors":"E. Makky, M. Yusoff","doi":"10.12720/JOMB.4.1.76-80","DOIUrl":"https://doi.org/10.12720/JOMB.4.1.76-80","url":null,"abstract":"Malaysia takes a step forward to promote and support the development of sustainable and green technology by adopting and master the technology holistically. Bioeconomy refers to all economic activity derived from scientific and research activity focused on biotechnology. Pectin degradation enzymes are widely used in the industrial processing of fruits and vegetables in order \u0000to decrease the viscosity of juices and thus to facilitate \u0000extraction, maceration, liquefaction, filtration and \u0000clarification processes. Sugar-cane bagasse (SCB) is agrowaste produced in large quantities in our environment used as the substrate for Exo-polygalacturonase (Exo-PG) from Thermomyces lanuginosus at 55°C under solid-state \u0000fermentation (SSF) culture. Exo-PG was purified using Gelfiltration chromatography and exhibited only one sharp \u0000peak. Biotechnological applications of fermented waste \u0000obtained, mixed with the fungal biomass at 55°C as \u0000biofertilizer at different concentrations (w/w) were \u0000cultivated with Zea mays for 30 days to indicate the plant \u0000growth on sandy soil and succeeded to induce the growth \u0000which may give an indication of applying the present \u0000biofertilizer particularly in the reclaimed sandy soils. Only 14 amino acids were detected and obviously that Exo-PG \u0000was typical proline containing enzyme.","PeriodicalId":437476,"journal":{"name":"Journal of medical and bioengineering","volume":"4 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2015-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"130860327","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The effect of temperature and pressure on the self-assembly of dipalmitoylphosphatidylcholine using coarse-grained molecular dynamics","authors":"N. Shaari, R. A. Karjiban, M. Basri","doi":"10.12720/JOMB.3.2.122-127","DOIUrl":"https://doi.org/10.12720/JOMB.3.2.122-127","url":null,"abstract":"The use of coarse-grained molecular dynamics (CG-MD) technique is a promising tool to explore the time and length scales of real physical system beyond what is feasible with atomistic molecular dynamics (MD). Here, structural and dynamics properties of the bilayer comprising 64 molecules of dipalmitoylphosphatidylcholine (DPPC) in water were investigated using coarse-grained molecular dynamics (CG-MD) simulation method. This was done to explore the effect of temperature and pressure on the self-assembly of DPPC. The models prepared were simulated at the temperatures of 298K and 323K under isotropic and semi-isotropic pressures. The aggregation started from the random configurations followed by forming bilayers in the period of 500 ns for all model systems. Area per lipid, thickness, and radial distribution values were different for each model while the bilayer formation pattern was the same. ","PeriodicalId":437476,"journal":{"name":"Journal of medical and bioengineering","volume":"351 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"126784210","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
A. Wibowo, Firrar Artmi Rahaju, Rizky Taufan Firdaus, E. Suhartono
{"title":"The Role of Urinary Cadmium and Lead Level on Pregnant Women Renal Function","authors":"A. Wibowo, Firrar Artmi Rahaju, Rizky Taufan Firdaus, E. Suhartono","doi":"10.12720/JOMB.3.1.55-58","DOIUrl":"https://doi.org/10.12720/JOMB.3.1.55-58","url":null,"abstract":"Cadmium (Cd) and lead (Pb) are heavy metals which used in many industry and were confirmed as environmental toxin and mainly effects reproductive system and toxic to growing fetus. Determination of cadmium and lead level generally measure by spectrophotometric methods. But in this study, we used a method based on approach adjusting specific gravity. This study aimed to evaluate the potential effect of cadmium and lead exposure on pregnancy outcome by measuring their correlation on renal function. This study was performed between January to May 2013 and targeted 57 pregnant women as the control group (32 patients of normal pregnancy) and case group (25 patients of preeclampsia). For analyzing of the data, SPSS software version 17 was used and was examined by Mann- Whitney test and Spearman correlation test. We found that there are significant correlation between Cd an Pb exposure on urea level, urea-creatinine ratio, and GFR of the pregnancy patients (p < 0,05) but unlike to the creatinine serum. ","PeriodicalId":437476,"journal":{"name":"Journal of medical and bioengineering","volume":"3 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"130512704","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The Role of cadmium in proteins glycation by glucose formation of methylglyoxal and hydrogen peroxide in vitro","authors":"E. Suhartono, T. Triawanti, A. Leksono, M. Djati","doi":"10.12720/JOMB.3.1.59-62","DOIUrl":"https://doi.org/10.12720/JOMB.3.1.59-62","url":null,"abstract":"Cadmium (Cd) is a heavy metal that be a source of concern for industrial workers and it was proposed in the formation of advance glycation end products (AGEs) such as methylglyoxal (MG). MG have recently attracted much attention because of their possible clinical significance in chronic and agerelated diseases. Based on previous research, methylglyoxal formation can be accelerated by metals in vitro. The role of Cd in the formation of MG and hydrogen peroxide has not been much studied. Thus, our study aims to measure the formation rate of MG and hydrogen peroxide in the presence of Cd in vitro. This research was divided into 4 groups (1 control group and 3 treatment groups), than we set carbonyl compound assay, methylglyoxals assay, and hydrogen peroxide assay. For analyzing of the data, SPSS software version 17 was used and was examined by ANOVA and regression correlation test. For all outcomes, a nominal p-value of p < 0,05 was considered significant. We found that there are significant correlation between Cd exposure on the formation of hydrogen peroxide and methylglyoxal (p < 0,05) in nonenzymatic glycation of proteins by glucose. The increased Cd level accelerate the formation of methylglyoxal and hydrogen peroxide.","PeriodicalId":437476,"journal":{"name":"Journal of medical and bioengineering","volume":"27 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"131925576","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
A. Finkelstein, Hugues Talbot, S. Topsu, T. Cynober, L. Garçon, Gregor Havkin, F. Kuypers
{"title":"Comparison between a Camera and a Four Quadrant Detector, in the Measurement of Red Blood Cell Deformability","authors":"A. Finkelstein, Hugues Talbot, S. Topsu, T. Cynober, L. Garçon, Gregor Havkin, F. Kuypers","doi":"10.12720/JOMB.2.1.62-65","DOIUrl":"https://doi.org/10.12720/JOMB.2.1.62-65","url":null,"abstract":"The ability of red blood cells (RBC) to deform under vascular conditions is essential for circulation. RBC deformability, measured at different shear rates and osmolalities, provides a useful way to evaluate RBC function and is used to diagnose several hereditary blood disorders. In clinical practice, ektacytometry has been used as a routine automated technique for measuring RBC deformability under shear stress at known osmolalities. RBC suspension is exposed to laser light and the resulting diffraction pattern is recorded. The mean deformability of the cells is characterized by the diffraction pattern. Our study is the first to compare the correspondence between two methods that measure diffraction simultaneously, on the same apparatus. Additionally, while others conducted studies under varying shear we used varying osmolalities. A laser beam splitter produced two identical diffraction patterns, evaluated by synchronous data acquisition and analysis: One pattern was acquired by a digital camera and analyzed by image processing software. The other was analyzed using photodiode measurement at four fixed points and a microcontroller interface. Data analysis resulted in two deformability vs. osmolality curves. Comparing these curves shows excellent overlap in shape with a clear difference in amplitude. Since routine Manuscript received Jan 15, 2013; revised March 1, 2013. patient curves are always compared to a normal control curve, the amplitue difference is not significant. Our results indicate that either method may be used for clinically-usable interpretation of RBC deformability, but also that additional studies are required in order to compare repeatability for both methods, and to demonstrate that the two curves overlap for a variety of pathologies.","PeriodicalId":437476,"journal":{"name":"Journal of medical and bioengineering","volume":"183 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"116514511","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Filipe Portela, M. Santos, J. Machado, A. Abelha, Álvaro M. Silva, Fernando Rua
{"title":"Real-Time Decision Support in Intensive Medicine: An intelligent approach for monitoring Data Quality","authors":"Filipe Portela, M. Santos, J. Machado, A. Abelha, Álvaro M. Silva, Fernando Rua","doi":"10.12720/JOMB.2.1.26-31","DOIUrl":"https://doi.org/10.12720/JOMB.2.1.26-31","url":null,"abstract":"Intensive Medicine is an area where big amounts of data are generated every day. The process to obtain knowledge from these data is extremely difficult and sometimes dangerous. The main obstacles of this process are the number of data collected manually and the quality of the data collected automatically. Information quality is a major constrain to the success of Intelligent Decision Support Systems (IDSS). This is the case of INTCare an IDSS which operates in real-time. Data quality needs to be ensured in a continuous way. The quality must be assured essentially in the data acquisition process and in the evaluation of the results obtained from data mining models. To automate this process a set of intelligent agents have been developed to perform a set of data quality tasks. This paper explores the data quality issues in IDSS and presents an intelligent approach for monitoring the data quality in INTCare system. ","PeriodicalId":437476,"journal":{"name":"Journal of medical and bioengineering","volume":"46 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"121608961","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
A. Abdullah, R. Mamat, R. Atiqah, Kidoguchi Yoshiyuki, Z. Azran
{"title":"Analysis of Straight Vegetable Oil (SVO) Spray Characteristics at End of Injection (EOI)","authors":"A. Abdullah, R. Mamat, R. Atiqah, Kidoguchi Yoshiyuki, Z. Azran","doi":"10.12720/JOMB.1.1.59-62","DOIUrl":"https://doi.org/10.12720/JOMB.1.1.59-62","url":null,"abstract":"The depletion source and the increasing demand of fossil fuel have prompted scientists and researchers to search new alternative fuels for diesel engine. Biodiesel is seen a promising alternative fuel to reduce dependent on conventional diesel fuel. Advantages of biodiesel compared to petroleum-based diesel include high biodegradability, excellent lubricity, higher flash point, no sulfur content and produces less air pollutants. Although biodiesel has many advantages on the fuel properties, the fuel consumption rate or lower horsepower output are still need to be improved. This is due to the differences in fuel properties especially the kinematic viscosity between diesel fuel (GO), biodiesel fuel (BDF) and straight vegetable oil (SVO). In this study, the effect of kinematic viscosity of SVO on the spray behavior at End of Injection (EOI) were investigated. High kinematic viscosity of fuel highly affects the spray characteristics at EOI. In additional, high injection pressure and high kinematic viscosity of SVO apply resistance at nozzle inner hole caused needle lift cannot completely close the nozzle at EOI signal. At the EOI in which the combustion temperature inside chamber reduces promptly, many fuel droplets could not undergo a complete atomization process especially for large size of diameter fuel droplets. This phenomenon result the development of carbon deposition around the nozzle tip area and it will cover the nozzle hole. The development of carbon deposition will affect the fuel flow from nozzle. This study indicates that fuel injection pressure show no effect on SVO spray characteristics at the end of injection. Furthermore, high ambient temperature spray will reduce the kinematic viscosity value of SVO and could improve SVO spray atomization at end of injection.","PeriodicalId":437476,"journal":{"name":"Journal of medical and bioengineering","volume":"369 ","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2012-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"113994795","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Manuel Rost, E. Zilberg, Z. Xu, Yue Feng, D. Burton, S. Lal
{"title":"Comparing Contribution of Algorithm Based Physiological Indicators for Characterisation of Driver Drowsiness","authors":"Manuel Rost, E. Zilberg, Z. Xu, Yue Feng, D. Burton, S. Lal","doi":"10.12720/jomb.4.5.391-398","DOIUrl":"https://doi.org/10.12720/jomb.4.5.391-398","url":null,"abstract":"The algorithm based physiological characteristics of driver drowsiness – ocular parameters (derived from the frontal electroencephalogram (EEG)), EEG alpha bursts and spectral power (derived from the central and occipital sites) as well as heart rate variability (HRV) were estimated from data derived during a driving simulator experiment (30 non-professional drivers). The statistical associations of these parameters with the “gold standards” of driver drowsiness were investigated using linear regression and linear mixed models. The statistical models were also examined for a number of hybrid algorithms, which combined multiple characteristics of driver drowsiness. A combination of ocular parameters showed the strongest association (R=0.48) with the applied trained observer rating (TOR) method; followed by EEG alpha bursts indicators (R=0.30) and EEG spectrum data (R=0.21). The HRV parameters showed a weak association (R=0.04) A joint model including the eye parameters and the EEG alpha bursts resulted in the highest R=0.54 to TOR. The results indicate that a hybrid automatic algorithm, based on multiple characteristics of the eye blinks and EEG patterns, but not necessarily including the HRV measures, is likely to achieve a level of accuracy in characterising driver drowsiness similar to that of a trained observer.","PeriodicalId":437476,"journal":{"name":"Journal of medical and bioengineering","volume":"36 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"1900-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"117103395","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
R. A. Chandra, Sriwidodo, Ajeng Diantini, I. Maksum
{"title":"Restriction Enzymes ApaI Analysis to Find A3243G Mutation in Indonesia Diabetes Mellitus Type II Patients","authors":"R. A. Chandra, Sriwidodo, Ajeng Diantini, I. Maksum","doi":"10.12720/jomb.4.6.492-496","DOIUrl":"https://doi.org/10.12720/jomb.4.6.492-496","url":null,"abstract":"The Use of PCR-RFLP (Polymerase Chain Reaction-Restriction Fragment Length Polymorphism) to find out the potential of mitochondrial DNA mutation at A3243G in type II Diabetic Patient has been done. Peripheral blood from 100 Indonesian type 2 diabetic subjects was selected randomly for this experiment. Peripheral blood lymphocyte was isolated, lysed, and it was in vitro amplified by PCR using a pair D1/D2 primers. PCR products were 294 base pair (bp) fragments which were then purified by ethanol precipitation method and characterized by restriction enzyme ApaI. Heteroplasmic A3243G mutation which was identified in 2 Subject (0,02%) was shown by 3 electrophoretic bands, 2 restriction products of APAI, i.e a 182 bp fragment and a 112 bp fragment; also a full fragment 294 bp, this means show that PCR-RFLP technique was approved for identifying heteroplasmic A3243g mutation in a tRNA gene mtDNA type 2 DM subject. ","PeriodicalId":437476,"journal":{"name":"Journal of medical and bioengineering","volume":"172 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"1900-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"125788688","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}