Current Plant Biology最新文献

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Combined application of biochar and silicon nanoparticles enhance soil and wheat productivity under drought: Insights into physiological and antioxidant defense mechanisms 生物炭和纳米硅的联合应用提高了干旱条件下土壤和小麦的生产力:生理和抗氧化防御机制的见解
IF 5.4
Current Plant Biology Pub Date : 2024-12-01 DOI: 10.1016/j.cpb.2024.100424
Bilal Zulfiqar , Muhammad Aown Sammar Raza , Muhammad Akhtar , Nan Zhang , Mamoona Hussain , Junaid Ahmad , Mostafa A. Abdel-Maksoud , Hossam Ebaid , Rashid Iqbal , Muhammad Usman Aslam , Mohamed A. El-Tayeb , Shiming Su
{"title":"Combined application of biochar and silicon nanoparticles enhance soil and wheat productivity under drought: Insights into physiological and antioxidant defense mechanisms","authors":"Bilal Zulfiqar ,&nbsp;Muhammad Aown Sammar Raza ,&nbsp;Muhammad Akhtar ,&nbsp;Nan Zhang ,&nbsp;Mamoona Hussain ,&nbsp;Junaid Ahmad ,&nbsp;Mostafa A. Abdel-Maksoud ,&nbsp;Hossam Ebaid ,&nbsp;Rashid Iqbal ,&nbsp;Muhammad Usman Aslam ,&nbsp;Mohamed A. El-Tayeb ,&nbsp;Shiming Su","doi":"10.1016/j.cpb.2024.100424","DOIUrl":"10.1016/j.cpb.2024.100424","url":null,"abstract":"<div><div>Agricultural drought periods are enhanced by the change in global climate that threatens food security. One of the main factors affecting soil and wheat productivity worldwide is drought stress. Especially, in semi-arid climates, studies are not found about adding organic amendments may be a viable way to reduce the adverse impacts of drought on crops while enhancing soil qualities and water use efficiency. In this study, we aimed to explore the effects of combined application of biochar (BC = 5 %) and silicon nanoparticles (SiNP = 900 mg/L) on soil and wheat drought resistance. Drought stress was applied at the three most critical growth stages of wheat, tillering (DTS), flowering (DFS), and grain filling (DGFS) stages, then evaluated the soil nutrients and wheat drought physiological resistance under applied treatments (BC, SiNP, BC+SiNP). Results showed that combined treatment of BC and SiNP greatly reduced the adverse effects of drought by enhancing plant height (9.36 %), spike length (25.63 %), number of fertile tillers (29.26 %), grains per spike (10.86 %), thousand-grain weight (18.25 %), and biological yield (16.34 %) with comparison to the control application. Additionally, physiological measures like water use efficiency (20.58 %), stomatal conductance (29.26 %), chlorophyll a (16.25 %), chlorophyll b (18.96 %), transpiration rate (21.65 %), photosynthetic rate (22.94 %), electrolyte leakage (-17.77 %), MDA (29.25 %), hydrogen peroxide (-19.88 %), superoxide dismutase (11.19 %), catalase (9.26 %), peroxidase (18.59 %), nitrogen (14.81 %), phosphorus (13.89 %), and potassium (17.61 %) were also meaningfully improved by treated application. BC and SiNP also significantly amended the organic carbon, nitrogen, and minerals percentage in soil. In conclusion, using the synergistic application of BC and SiNP could be a successful strategy to promote the biological soil properties, plant growth, yield, and quality of wheat crops as compared to all other treatments via dropping the dangerous effects of drought stress.</div></div>","PeriodicalId":38090,"journal":{"name":"Current Plant Biology","volume":"40 ","pages":"Article 100424"},"PeriodicalIF":5.4,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142759046","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Regulatory mechanisms of MADS-box transcription factors in growth, development, and environmental stress-targeting increased rice yield
IF 5.4
Current Plant Biology Pub Date : 2024-11-30 DOI: 10.1016/j.cpb.2024.100426
An Wang, Chaoqing Ding, Yuqin Hu, Qian Qian, Deyong Ren
{"title":"Regulatory mechanisms of MADS-box transcription factors in growth, development, and environmental stress-targeting increased rice yield","authors":"An Wang,&nbsp;Chaoqing Ding,&nbsp;Yuqin Hu,&nbsp;Qian Qian,&nbsp;Deyong Ren","doi":"10.1016/j.cpb.2024.100426","DOIUrl":"10.1016/j.cpb.2024.100426","url":null,"abstract":"<div><div>As critical transcription factors regulating various life activities, MADS-box transcription factors have been demonstrated to play key roles in controlling crop growth, development, and organogenesis. However, their relationship with crop yield has been seldom summarized. This article reviews the molecular mechanisms and genetic networks by which MADS-box transcription factors influence rice yield through regulating seed development, spikelet number, root nitrogen uptake, and environmental adaptability. Additionally, this review presents case studies on the application of favorable alleles within the MADS family genes in breeding practices. It also discusses how to integrate traditional breeding methods with emerging biotechnologies to overcome the adverse effects of linkage disequilibrium and pleiotropy in quantitative traits, aiming to achieve high yield, high quality, and stress-resistant breeding targets. Exploring and utilizing the molecular mechanisms of MADS-box transcription factors in rice yield regulation can significantly enhance crop productivity and ensure global food security.</div></div>","PeriodicalId":38090,"journal":{"name":"Current Plant Biology","volume":"41 ","pages":"Article 100426"},"PeriodicalIF":5.4,"publicationDate":"2024-11-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143135222","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Regulation of nitrogen and phosphorus content and terpenoid metabolite accumulation in P. ginseng by exogenous strigolactone
IF 5.4
Current Plant Biology Pub Date : 2024-11-26 DOI: 10.1016/j.cpb.2024.100425
Hao Liang , Hai Sun , Cai Shao , Bochen Lv , Weiyu Cao , Jixin Zhou , Jiapeng Zhu , Yayu Zhang
{"title":"Regulation of nitrogen and phosphorus content and terpenoid metabolite accumulation in P. ginseng by exogenous strigolactone","authors":"Hao Liang ,&nbsp;Hai Sun ,&nbsp;Cai Shao ,&nbsp;Bochen Lv ,&nbsp;Weiyu Cao ,&nbsp;Jixin Zhou ,&nbsp;Jiapeng Zhu ,&nbsp;Yayu Zhang","doi":"10.1016/j.cpb.2024.100425","DOIUrl":"10.1016/j.cpb.2024.100425","url":null,"abstract":"<div><div><em>Panax ginseng</em> C.A. Meyer (<em>P. ginseng</em>) possesses extensive pharmacological uses, yet its cultivation demands specific soil conditions. Nutrient deficiencies frequently impede the growth of ginseng and its accumulation of pharmacologically active compounds, diminishing its medicinal value. One strategy to counteract nutrient shortages and boost the synthesis of active compounds involves applying exogenous plant hormones. This study investigated the effect of GR24, an exogenous strigolactone analog, on <em>P. ginseng</em>'s resilience to low nitrogen and low phosphorus (LNLP) stress, using concentrations of 0, 3, 6, and 9 μM. Under LNLP conditions, GR24 mitigated the decrease in terpene metabolite accumulation, enhancing the levels of most terpenoid compounds. Furthermore, both LNLP and GR24 treatments significantly impacted IAA and CTK concentrations. LNLP stress and GR24 application influenced the expression of genes associated with the strigolactone biosynthesis pathway, such as <em>PgD27–3</em> and <em>PgSLs</em>, although these genes operated independently of each other. Transient overexpression of <em>PgD27–3</em> in <em>Nicotiana benthamiana</em> demonstrated that <em>PgD27–3</em> reduced peroxide levels and antioxidant enzyme activity while upregulating genes related to nitrogen, phosphorus, phytohormone, and terpene metabolism. Therefore, <em>PgD27–3</em> overexpression may alleviate LNLP stress by lowering peroxide content and antioxidant enzyme activity while enhancing gene expression, which in turn promotes terpene metabolite accumulation under LNLP stress. GR24 thus emerges as a viable strategy to mitigate N and P stress, potentially improving the yield and quality of <em>P. ginseng</em> through agronomic practices.</div></div>","PeriodicalId":38090,"journal":{"name":"Current Plant Biology","volume":"41 ","pages":"Article 100425"},"PeriodicalIF":5.4,"publicationDate":"2024-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143135424","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Sulfur redirects carbon metabolism to optimize nitrogen utilization and promote andrographolide biosynthesis in Andrographis paniculata seedlings 硫能调整穿心莲幼苗的碳代谢方向,优化氮的利用并促进穿心莲内酯的生物合成
IF 5.4
Current Plant Biology Pub Date : 2024-11-22 DOI: 10.1016/j.cpb.2024.100422
Shao-Fen Jian , Yan-Fen Huang , Si Wan , Dong-Liang Chen , Yang Lin , Qiong Liao , Chu Zhong
{"title":"Sulfur redirects carbon metabolism to optimize nitrogen utilization and promote andrographolide biosynthesis in Andrographis paniculata seedlings","authors":"Shao-Fen Jian ,&nbsp;Yan-Fen Huang ,&nbsp;Si Wan ,&nbsp;Dong-Liang Chen ,&nbsp;Yang Lin ,&nbsp;Qiong Liao ,&nbsp;Chu Zhong","doi":"10.1016/j.cpb.2024.100422","DOIUrl":"10.1016/j.cpb.2024.100422","url":null,"abstract":"<div><div>Sulfur (S) is an important mineral nutrient element that improves plant growth and secondary metabolism. S affects the biosynthesis of andrographolide in medicinal plant <em>Androgaphis paniculata</em> by regulating nitrogen (N) metabolism. However, its specific role in N utilization and the connection with andrographolide biosynthesis have not yet been thoroughly understood. Here, a soilless cultivation experiment with low S (LS, 0.1 mM) and high S (HS, 2.4 mM) was conducted to investigate how S influences carbon (C) metabolism and N utilization to promote andographolide biosynthesis in <em>Andrographis paniculata</em>. The results showed that HS significantly increased plant biomass and N use efficiency (NUE), accompanying with remarkable enhanced andrographolide content. HS promoted the expression of photosynthetic genes, and redirected C metabolism towards to sugars accumulation by enhancing the activities of NAD-dependent glutamate dehydrogenase (NAD-GDH), malic enzyme (ME) and phosphoenolpyruvate carboxykinase (PEPCK) (<em>P</em> &lt; 0.05). On the other hand, HS reduced N and S assimilation, and stimulated a greater N allocation in photosynthesis. Accordingly, NUE was increased and andrographolided biosynthesis could profit from the shift of C resource reallocation. Additionally, the significantly increased activities of ME, glucose 6-phosphate dehydrogenase (G6PDH) and isocitrate dehydrogenase (ICDH) provided reductants for secondary metabolism. HS also considerably upregulated the expression of genes in andrographolide biosynthetic pathway, including <em>ApDXS</em>, <em>ApDXR</em>, <em>ApHDS</em> and <em>ApHDR</em> in the MEP pathway, and <em>ApGGPS</em>. Transcription factors in the families of MYB, WRKY, ERF and bHLH, and plant hormones ABA and JA were in response to HS. Our results revealed that S synergistically promotes NUE and andrographolide biosynthesis via remodeling of C metabolism in <em>A. paniculata</em>.</div></div>","PeriodicalId":38090,"journal":{"name":"Current Plant Biology","volume":"40 ","pages":"Article 100422"},"PeriodicalIF":5.4,"publicationDate":"2024-11-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142698185","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Advancing sustainability: The impact of emerging technologies in agriculture 促进可持续性:新兴技术对农业的影响
IF 5.4
Current Plant Biology Pub Date : 2024-11-19 DOI: 10.1016/j.cpb.2024.100420
Ashoka Gamage , Ruchira Gangahagedara , Shyamantha Subasinghe , Jeewan Gamage , Chamini Guruge , Sera Senaratne , Thevin Randika , Chamila Rathnayake , Zammil Hameed , Terrence Madhujith , Othmane Merah
{"title":"Advancing sustainability: The impact of emerging technologies in agriculture","authors":"Ashoka Gamage ,&nbsp;Ruchira Gangahagedara ,&nbsp;Shyamantha Subasinghe ,&nbsp;Jeewan Gamage ,&nbsp;Chamini Guruge ,&nbsp;Sera Senaratne ,&nbsp;Thevin Randika ,&nbsp;Chamila Rathnayake ,&nbsp;Zammil Hameed ,&nbsp;Terrence Madhujith ,&nbsp;Othmane Merah","doi":"10.1016/j.cpb.2024.100420","DOIUrl":"10.1016/j.cpb.2024.100420","url":null,"abstract":"<div><div>The need to ensure food security and promote environmental sustainability has led to a transformative period in agriculture. This period is characterized by the use of novel technology, which provides solutions that effectively address ecological concerns while also ensuring economic viability. Emerging technologies, such as precision farming enabled by drones, sensor-based monitoring systems and genetic editing techniques that result in drought-resistant crops, are significantly changing the agricultural sector. The integration of data analytics and machine learning algorithms is transforming supply chain management and enhancing the capabilities of predictive analytics in the context of crop diseases. Technological interventions serve to optimize efficiency and minimize the adverse ecological effects associated with farming, promoting the goals of sustainable agriculture. However, it is important to carefully address ethical and socio-economic considerations, including accessibility and data privacy, to manage these effects effectively. Therefore, the objective of this study is to examine the contributions of emerging technology to sustainable agriculture, evaluate its constraints, and suggest a comprehensive framework for its ethical and equitable integration. Communication technology has also impacted the agricultural sector, particularly with the increased use of connected devices. Artificial intelligence and deep learning advancements make processing collected data faster and more efficient, leading to more sustainable agricultural production using free, open-source software and sensor technology solutions. This technology enhances land optimization and boosts agricultural productivity, making sustainable farming practices more viable for both large and small-scale farmers. Our bibliometric analysis indicates a notable increase in interest in integrating sustainable agricultural methods with new technologies, particularly since 2018. It also revealed a strong link between precision agriculture, smart farming, machine learning, and the Internet of Things. However, awareness of technology is not very prevalent in the Asian region, especially among small-scale farmers. As a result, excessive usage of agricultural resources and wastage bring many adverse repercussions, and it's a high constraint to sustainable agricultural practices in the region.</div></div>","PeriodicalId":38090,"journal":{"name":"Current Plant Biology","volume":"40 ","pages":"Article 100420"},"PeriodicalIF":5.4,"publicationDate":"2024-11-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142698186","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Rock dust-based potting media enhances agronomic performance and nutritional quality of horticultural crops 基于岩屑的盆栽介质可提高园艺作物的农艺性能和营养质量
IF 5.4
Current Plant Biology Pub Date : 2024-11-17 DOI: 10.1016/j.cpb.2024.100419
Abraham Arma , Linda Alrayes , Thu Huong Pham , Muhammad Nadeem , Charles Manful , Owen Bartlett , Eric Fordjour , Mumtaz Cheema , Lakshman Galagedara , Lord Abbey , Raymond Thomas
{"title":"Rock dust-based potting media enhances agronomic performance and nutritional quality of horticultural crops","authors":"Abraham Arma ,&nbsp;Linda Alrayes ,&nbsp;Thu Huong Pham ,&nbsp;Muhammad Nadeem ,&nbsp;Charles Manful ,&nbsp;Owen Bartlett ,&nbsp;Eric Fordjour ,&nbsp;Mumtaz Cheema ,&nbsp;Lakshman Galagedara ,&nbsp;Lord Abbey ,&nbsp;Raymond Thomas","doi":"10.1016/j.cpb.2024.100419","DOIUrl":"10.1016/j.cpb.2024.100419","url":null,"abstract":"<div><div>The study evaluates the use of rock dust (RD)-based potting media in enhancing the agronomic performance and nutritional quality of amaranth, kale, and lettuce under controlled environmental conditions. A total of ten growth media formulations, including: 1) 100 % RD (RD), 2) 50 % RD+50 % Topsoil (RDT), 3) 50 % RD + 25 % Biochar + 25 % Promix (RBP) 4) 100 % Topsoil (TS), 5) 25 % RD + 75 % Topsoil (RT), 6) Huplaso (negative control), 7) 50 % RD + 25 % compost + 25 % promix (RCP), 8) 50 % RD + 50 % Promix (RP), 9) Promix (P) (Control), and 10) 50 % RD + 50 % Biochar (RB) were evaluated. The addition of RD to media resulted in a significantly higher root-shoot ratio in amaranth and lettuce. The RCP, RBP, and control showed a significant increase (p&lt;0.05) in total biomass (TBM) and the number of leaves in kale and lettuce during crop cycles. The total antioxidant content of lettuce showed a significant increase in RT&gt;RCP&gt;RD over the control P. Lettuce crops grown in RB had the highest consumer preference based on size and overall appearance. Overall, this study demonstrated an increase in total microminerals, fresh weight, total biomass, MUFA (monosaturated fatty acid), protein content, and antioxidants in plant tissue produced using RD-based media amendments. This is supported by the strong association observed between the media quality and the agronomic performance as well as the nutritional composition. The results suggest RD-based amendments (RCP, RBP, RB, and RP) could be used as suitable, sustainable, and cost-effective media amendments for improving the growth and nutritional composition of vegetable crops, limiting the environmental disposal of RD following precious metal mining. Further optimization of the above media would enhance its utility for vegetable production in different crop management systems.</div></div>","PeriodicalId":38090,"journal":{"name":"Current Plant Biology","volume":"40 ","pages":"Article 100419"},"PeriodicalIF":5.4,"publicationDate":"2024-11-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142698319","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Probing marine macroalgal phlorotannins as an antibacterial candidate against Salmonella typhi: Molecular docking and dynamics simulation approach 探索海洋大型藻类叶绿单宁作为伤寒沙门氏菌抗菌候选物质的可能性:分子对接和动力学模拟方法
IF 5.4
Current Plant Biology Pub Date : 2024-11-13 DOI: 10.1016/j.cpb.2024.100418
Arun Kumar Malaisamy , Balamuralikrishnan Balasubramanian , Pon Yazhine Tamilselvan , Venkatesh Sakthivel , Santhi Venkatachalapathi , Haripriya Kuchi Bhotla
{"title":"Probing marine macroalgal phlorotannins as an antibacterial candidate against Salmonella typhi: Molecular docking and dynamics simulation approach","authors":"Arun Kumar Malaisamy ,&nbsp;Balamuralikrishnan Balasubramanian ,&nbsp;Pon Yazhine Tamilselvan ,&nbsp;Venkatesh Sakthivel ,&nbsp;Santhi Venkatachalapathi ,&nbsp;Haripriya Kuchi Bhotla","doi":"10.1016/j.cpb.2024.100418","DOIUrl":"10.1016/j.cpb.2024.100418","url":null,"abstract":"<div><div>The increasing prevalence of drug-resistant bacterial strains, including multidrug-resistant <em>Salmonella typhi</em>, has raised significant concerns about the effectiveness of traditional antimicrobial treatments. To address this issue, the study employed computational techniques to evaluate the potential of natural phlorotannins derived from marine algae as alternative antibacterial agents against <em>S. typhi</em>. A total of 104 phlorotannins were retrieved from PubChem and subjected to molecular docking with three specific target proteins of <em>S. typhi</em>. Among the compounds tested, Compound-10 a derivative of dieckol exhibited the highest affinity for the Omptin family outer membrane protease [pgtE] protein and for the cell invasion protein sipB protein. The docking results revealed strong interactions between the phlorotannins and the target proteins, indicating their potential as antimicrobial agents. Additionally, pharmacokinetic studies using the QikProp module demonstrated that the top-ranked compounds showed favourable drug-like properties with good druggable efficiency, moderate gut-blood barrier transport, and high human oral absorption. Most compounds passed the rule of three and five drug-likeness criteria, indicating their potential as drug candidates. Furthermore, MM-GBSA analysis provided relative binding affinity estimations, ranking the compounds based on their calculated binding energies. These results align reasonably well with experimental binding affinities, reinforcing the potential of the identified compounds as potent binders to their target proteins. This study highlights the promising antibacterial potential of marine phlorotannins against <em>S. typhi.</em> Further <em>in vitro</em> studies are warranted to validate these compounds' efficacy and anti-microbial activity, ultimately paving the way for developing new therapeutic strategies to combat drug-resistant <em>Salmonella</em> infections.</div></div>","PeriodicalId":38090,"journal":{"name":"Current Plant Biology","volume":"40 ","pages":"Article 100418"},"PeriodicalIF":5.4,"publicationDate":"2024-11-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142698187","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Transcriptome signature for multiple biotic and abiotic stress in barley (Hordeum vulgare L.) identifies using machine learning approach 利用机器学习方法识别大麦(Hordeum vulgare L.)多种生物和非生物胁迫的转录组特征
IF 5.4
Current Plant Biology Pub Date : 2024-11-07 DOI: 10.1016/j.cpb.2024.100416
Bahman Panahi
{"title":"Transcriptome signature for multiple biotic and abiotic stress in barley (Hordeum vulgare L.) identifies using machine learning approach","authors":"Bahman Panahi","doi":"10.1016/j.cpb.2024.100416","DOIUrl":"10.1016/j.cpb.2024.100416","url":null,"abstract":"<div><div>Barley (<em>Hordeum vulgare</em> L.) is exposed to various biotic and abiotic stresses, making it crucial to fully understand the gene signatures that respond to stress. This study utilizes machine learning to analyze transcriptomic data from 515 RNA-seq profiles across 18 independent studies, covering eleven abiotic and three biotic stress types. Through meticulous data preprocessing, including quality assessment and batch effect correction, we have identified 4311 genes for further analysis. Feature selection was performed using five weighting algorithms, resulting in the prioritization of 400 core genes. Machine learning models, specifically Random Forest and C4.5, were optimized and evaluated using a 10-fold cross-validation approach. The C4.5 algorithm demonstrated superior accuracy in predicting stress-responsive signatures. Key genes, such as bHLH119 and E3 ubiquitin protein ligase DRIP2, were identified as potential biomarkers. Functional enrichment analysis, conducted through protein-protein interaction networks and Gene Ontology/KEGG pathway analysis, has revealed significant involvement in lipid biosynthesis, signal transduction, and defense response processes. These findings highlight the crucial roles of the identified biomarkers genes in barley's resilience to stress and provide potential targets for genetic improvement. Future research should focus on validating these biomarkers in different barley cultivars and under field conditions to enhance crop resilience against stressors.</div></div>","PeriodicalId":38090,"journal":{"name":"Current Plant Biology","volume":"40 ","pages":"Article 100416"},"PeriodicalIF":5.4,"publicationDate":"2024-11-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142655932","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Integrated transcriptomic and metabolomic analysis reveals the effects of forchlorfenuron and thidiazuron on flavonoid biosynthesis in table grape skins 转录组学和代谢组学综合分析揭示了氟虫脲和噻虫隆对鲜食葡萄皮中黄酮类化合物生物合成的影响
IF 5.4
Current Plant Biology Pub Date : 2024-11-07 DOI: 10.1016/j.cpb.2024.100417
Ting Zheng , Pengcheng Zhao , Jiang Xiang , Lingzhu Wei , Wanting Shen , Jiang Wu , Jianhui Cheng
{"title":"Integrated transcriptomic and metabolomic analysis reveals the effects of forchlorfenuron and thidiazuron on flavonoid biosynthesis in table grape skins","authors":"Ting Zheng ,&nbsp;Pengcheng Zhao ,&nbsp;Jiang Xiang ,&nbsp;Lingzhu Wei ,&nbsp;Wanting Shen ,&nbsp;Jiang Wu ,&nbsp;Jianhui Cheng","doi":"10.1016/j.cpb.2024.100417","DOIUrl":"10.1016/j.cpb.2024.100417","url":null,"abstract":"<div><div>Forchlorfenuron (CPPU) and thidiazuron (TDZ) are the most commonly used plant growth regulators in grape production. However, their application can result in astringency and uneven fruit skin coloring, which are related to flavonoid metabolic pathway. Therefore, this study investigated the effects of CPPU and TDZ on flavonoid synthesis in ‘Tiangong Moyu’ grape. The swelling effect of TDZ was better than that of CPPU, with T5 (25 mg·L<sup>−1</sup> GA<sub>3</sub>+2.5 mg·L<sup>−1</sup> TDZ applied at 100 % flowering and 25 mg·L<sup>−1</sup> GA<sub>3</sub>+2.5 mg·L<sup>−1</sup> TDZ applied 15 d later) showing the best swelling effect. Both CPPU and TDZ increased flavonoid content, and CPPU accelerated coloring. Combined with transcriptome analysis, cluster analysis showed that treatments T3 (two CPPU applications) and T5 had the strongest correlation. T5 caused the greatest change in flavonoid biosynthesis pathway. Weighted gene co-expression network analysis (WGCNA) showed that MM.magenta was correlated with tannin and flavonoid contents. <em>GST23</em> was consistent with the mature fruit flavonoid contents. <em>WRKY57</em> and <em>MYB86</em> increased after CPPU and TDZ treatment, especially in T5. Metabolomic analysis showed that the smallest difference in composition occurred between T1 (control) and T4 (one TDZ application), and naringenin only showed differences in T1 vs T4 and T1 vs T5, with enrichment in the flavonoid biosynthesis pathway. Association analysis in the flavonoid synthesis pathway showed that catechin, dihydrokaempferol, and naringenin were associated. Catechin is closely related to <em>CHS17</em>, with higher levels in T2 (one CPPU application) and T3. The above results provide a theoretical basis for improving grape berry quality using plant growth regulators.</div></div>","PeriodicalId":38090,"journal":{"name":"Current Plant Biology","volume":"40 ","pages":"Article 100417"},"PeriodicalIF":5.4,"publicationDate":"2024-11-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142655930","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Unlocking the biochemical and computational parameters of Ceropegia foetida: A scientific approach for functional bioactive compounds from a medicinal food plant 揭示 Ceropegia foetida 的生物化学和计算参数:从药用食用植物中提取功能性生物活性化合物的科学方法
IF 5.4
Current Plant Biology Pub Date : 2024-11-06 DOI: 10.1016/j.cpb.2024.100414
Fawaz Alheibshy , Abdulwahab Alamri , Saad Saeed Saad Alshahrani , Ahmed Awadh Saleh Alamri , Nasser A.Awadh Ali , Abdulwali Al-Khulaidi , Arshad Hussain , Sirajudheen Anwar
{"title":"Unlocking the biochemical and computational parameters of Ceropegia foetida: A scientific approach for functional bioactive compounds from a medicinal food plant","authors":"Fawaz Alheibshy ,&nbsp;Abdulwahab Alamri ,&nbsp;Saad Saeed Saad Alshahrani ,&nbsp;Ahmed Awadh Saleh Alamri ,&nbsp;Nasser A.Awadh Ali ,&nbsp;Abdulwali Al-Khulaidi ,&nbsp;Arshad Hussain ,&nbsp;Sirajudheen Anwar","doi":"10.1016/j.cpb.2024.100414","DOIUrl":"10.1016/j.cpb.2024.100414","url":null,"abstract":"<div><div>Investigating the therapeutic potentials of medicinal plants remains pivotal in the discovery of novel bioactive compounds for food and pharmaceutical applications. This research delves into the phytochemical composition and biological activities of <em>Ceropegia foetida's</em> methanol extract, employing comprehensive UHPLC-MS for secondary metabolites profiling. The study quantifies the extract's substantial phenolic (76.12 mg GAE/g) and flavonoid (21.58 mg QE/g) contents, revealing a promising correlation with robust antioxidant activities, as evidenced by notable ABTS, FRAP, and CUPRAC assay outcomes. Furthermore, the extract demonstrates significant inhibitory effects on key enzymes implicated in neurodegenerative disorders and diabetes, including acetylcholinesterase (3.56 mg GALAE/g), butyrylcholinesterase (2.91 mg GALAE/g), and tyrosinase (128.31 mg KAE/g). UHPLC-MS analysis confirms the presence of 39 distinct phytochemicals across six primary categories, affirming the extract's complex bioactive profile. In complement to experimental assays, computational analyses <em>via</em> molecular docking simulations provided insights into the interaction mechanisms of identified phytochemicals with the target enzymes. These simulations revealed a substantial binding affinity of the plant's constituents towards enzymes compared to standard inhibitors, highlighting the compounds responsible for C<em>. foetida</em>'s bioactivity. Such computational insights, alongside empirical data, suggest that <em>C. foetida</em> merits further exploration as a natural source of therapeutic agents. Overall, the efficacious enzyme inhibition, coupled with the identified phytochemical diversity, underscores the potential of <em>C. foetida</em> as a valuable natural resource for developing nutraceuticals and therapeutic agents. These findings support the further investigation of <em>C. foetida</em> for its applicability in enhancing health and treating chronic conditions.</div></div>","PeriodicalId":38090,"journal":{"name":"Current Plant Biology","volume":"40 ","pages":"Article 100414"},"PeriodicalIF":5.4,"publicationDate":"2024-11-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142655934","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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