World journal of microbiology & biotechnology最新文献

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The capacity of the green microalga Chlorella vulgaris in overcoming the detrimental effects of cephalexin contamination. 绿色微藻小球藻克服头孢氨苄污染有害影响的能力。
IF 4 3区 生物学
World journal of microbiology & biotechnology Pub Date : 2025-03-28 DOI: 10.1007/s11274-025-04329-3
Veghar Amirian, Morteza Kosari-Nasab, Ali Movafeghi
{"title":"The capacity of the green microalga Chlorella vulgaris in overcoming the detrimental effects of cephalexin contamination.","authors":"Veghar Amirian, Morteza Kosari-Nasab, Ali Movafeghi","doi":"10.1007/s11274-025-04329-3","DOIUrl":"https://doi.org/10.1007/s11274-025-04329-3","url":null,"abstract":"<p><p>Antibiotics have the potential to affect the health of humans and other living organisms even at slight concentrations. Therefore, there has been a growing global awareness of the environmental impacts associated with antibiotics as emerging pollutants. Cephalexin (CPX) is classified as a first-generation cephalosporin and exhibits a significant efficacy in combating bacterial infections. The current work was conducted to examine the capability of the microalga Chlorella vulgaris to mitigate CPX contamination in aquatic environments. The results indicated that the growth of microalgae diminished in a dose-dependent manner after a 6-day exposure to concentrations of 200-800 mg L<sup>- 1</sup> CPX. The analysis conducted through scanning electron microscopy revealed alterations in cell morphology, specifically shrinkage and wrinkling, following the application of CPX. These effects became more significant as the concentration of CPX increased. The results from flow cytometry revealed a notable decrease in cell viability for all concentrations of CPX used, with the highest concentration yielding a viability rate of less than 30%. In addition, CPX caused a decrease in levels of photosynthetic pigments and non-enzymatic antioxidants, including phenols and flavonoids. However, the activity levels of the main antioxidant enzymes considerably increased, achieving their peak at 800 mg L⁻¹. Moreover, the algal cells demonstrated the capability to decrease the concentration of CPX present in the contaminated media, with the most effective reduction observed at 400 mg L<sup>- 1</sup>. The data obtained confirmed the significant toxicity of CPX on Chlorella vulgaris, while also emphasizing the ability of microalgal cells to withstand antibiotic contamination.</p>","PeriodicalId":23703,"journal":{"name":"World journal of microbiology & biotechnology","volume":"41 4","pages":"109"},"PeriodicalIF":4.0,"publicationDate":"2025-03-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143732108","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Microbial synthesis of enantiopure (S)-2-methylbutanoic acid via L-isoleucine catabolism in Bacillus spizizenii. 芽孢杆菌l -异亮氨酸分解代谢对映纯(S)-2-甲基丁酸的微生物合成。
IF 4 3区 生物学
World journal of microbiology & biotechnology Pub Date : 2025-03-28 DOI: 10.1007/s11274-025-04324-8
Jing-Yi Zhao, Fan Gao, Mengru Wu, Yang Li, Yong Chen, Zijun Xiao
{"title":"Microbial synthesis of enantiopure (S)-2-methylbutanoic acid via L-isoleucine catabolism in Bacillus spizizenii.","authors":"Jing-Yi Zhao, Fan Gao, Mengru Wu, Yang Li, Yong Chen, Zijun Xiao","doi":"10.1007/s11274-025-04324-8","DOIUrl":"https://doi.org/10.1007/s11274-025-04324-8","url":null,"abstract":"<p><p>Enantiopure (S)-2-methylbutanoic acid [(S)-2-MBA] is a high-value chiral compound with applications in fragrances, pharmaceuticals, and agrochemicals. However, conventional chemical synthesis lacks stereoselectivity, while existing biosynthetic methods suffer from low yield and purity. Here, we report a novel microbial process using Bacillus spizizenii ATCC 6633 for efficient (S)-2-MBA production via L-isoleucine catabolism. Through targeted screening of rhizospheric soil isolates and Bacillaceae strains, ATCC 6633 demonstrated superior performance, producing 3.67 g/L (S)-2-MBA with 99.32% enantiomeric excess (ee) under optimized conditions (45 °C, 8% inoculation, 5 g/L glucose, and 8 g/L L-isoleucine). A 58.92% conversion efficiency was achieved, and a simplified purification process recovered 63.90% product with 97.32% purity. Mechanistic studies suggested glucose depletion triggered (S)-2-MBA accumulation, aligning with starvation-induced secondary metabolism. This cost-effective, eco-friendly approach eliminates racemic separation steps and harsh reagents, positioning ATCC 6633 as a promising biocatalyst for sustainable (S)-2-MBA production.</p>","PeriodicalId":23703,"journal":{"name":"World journal of microbiology & biotechnology","volume":"41 4","pages":"117"},"PeriodicalIF":4.0,"publicationDate":"2025-03-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143732093","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Impact of a previous infection with Taenia crassiceps cysticerci on the susceptibility to Leishmania (L.) major or L. (V.) braziliensis. 以往感染带绦虫囊尾蚴对大利什曼原虫或巴西利什曼原虫易感性的影响
IF 4 3区 生物学
World journal of microbiology & biotechnology Pub Date : 2025-03-28 DOI: 10.1007/s11274-025-04327-5
André Murilo de Souza Marques, Santiago Aguiar Espellet Soares, José Rodrigues do Carmo-Neto, Clayson Moura Gomes, Marina Clare Vinaud, Grazzielle Guimarães de Matos, Milton Adriano Pelli de Oliveira
{"title":"Impact of a previous infection with Taenia crassiceps cysticerci on the susceptibility to Leishmania (L.) major or L. (V.) braziliensis.","authors":"André Murilo de Souza Marques, Santiago Aguiar Espellet Soares, José Rodrigues do Carmo-Neto, Clayson Moura Gomes, Marina Clare Vinaud, Grazzielle Guimarães de Matos, Milton Adriano Pelli de Oliveira","doi":"10.1007/s11274-025-04327-5","DOIUrl":"https://doi.org/10.1007/s11274-025-04327-5","url":null,"abstract":"<p><p>The development of leishmaniasis depends on the ability of Leishmania to invade and survive within macrophages. Macrophages can either promote parasite elimination or support its survival, depending on whether they are classically (M1) or alternatively (M2) activated. Mice chronically infected with Taenia crassiceps cysticerci (TC) develop a predominantly Th2 immune response, which leads to an increased number of M2 macrophages. In this study, we assessed the susceptibility of BALB/c mice previously infected with TC to Leishmania (V.) braziliensis or Leishmania (L.) major. Mice were first inoculated intraperitoneally with TC and after eight weeks infected either L. (V.) braziliensis or L. (L.) major in the paw. We evaluated footpad swelling and parasite load in different organs. We also assessed parasite load in vitro at 3 h, 3, 6, and 9 days; nitric oxide (NO) production, and arginase activity. Macrophages obtained from TC-infected mice (TcMΦ) were more susceptible to L. (V.) braziliensis infection, maintaining a stable parasite load without significant proliferation, while the parasite was killed in thioglycolate-elicited macrophages (TgMΦ). In contrast, L. (L.) major proliferated intensely in TcMΦ, leading to a higher parasite load compared to TgMΦ. In vivo, infection with L. (V.) braziliensis in TC-coinfected mice did not alter the parasite load compared to the group without cysticerci. However, mice infected with L. (L.) major exhibited greater swelling and higher parasite burdens. These findings suggest that infection with TC modulates the immune response of mice but is unable to render resistant mice susceptible to L. (V.) braziliensis.</p>","PeriodicalId":23703,"journal":{"name":"World journal of microbiology & biotechnology","volume":"41 4","pages":"115"},"PeriodicalIF":4.0,"publicationDate":"2025-03-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143732092","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Tropical lakes as a novel source of oleaginous yeasts with lipid profiles for biodiesel, oleochemical, and nutraceutical applications. 热带湖泊作为产油酵母的新来源,具有生物柴油,油脂化学和营养保健应用的脂质特征。
IF 4 3区 生物学
World journal of microbiology & biotechnology Pub Date : 2025-03-13 DOI: 10.1007/s11274-025-04309-7
Mauricio Ramirez-Castrillon, Tatiana Andrea Benavides-León, Lizeth Vanessa Arcos-Velasco, Kriss Dayana Pantoja-Pulido, Lizbeth Lorena Lopez-Parra, Ana Cristina Bolaños-Rojas, Esteban Osorio-Cadavid
{"title":"Tropical lakes as a novel source of oleaginous yeasts with lipid profiles for biodiesel, oleochemical, and nutraceutical applications.","authors":"Mauricio Ramirez-Castrillon, Tatiana Andrea Benavides-León, Lizeth Vanessa Arcos-Velasco, Kriss Dayana Pantoja-Pulido, Lizbeth Lorena Lopez-Parra, Ana Cristina Bolaños-Rojas, Esteban Osorio-Cadavid","doi":"10.1007/s11274-025-04309-7","DOIUrl":"10.1007/s11274-025-04309-7","url":null,"abstract":"<p><p>Oleaginous yeasts have emerged as promising microbial cell factories for lipid production, offering sustainable alternatives to traditional sources of biodiesel and nutraceuticals. In this study, the lipid accumulation potential of yeast strains isolated from two freshwater aquatic ecosystems in Cali, Colombia, was evaluated to identify novel candidates for biotechnological applications. A total of 56 strains were tested for their oleaginous nature using a gravimetric lipid assay with glucose as a carbon source. Of the assessed strains, 46.15% exceeded 20% lipid yields relative to the dry biomass. Seven strains were selected using glycerol as a carbon source, but only five yeasts were further characterized for their lipid profiles. Molecular identification revealed diverse species, including Aureobasidium sp., Papiliotrema rajashtanensis, Rhodotorula spp., and Clavispora lusitaniae. The selected strains demonstrated unique lipid profiles, with high proportions of monounsaturated and polyunsaturated fatty acids, such as oleic acid (C18:1) and linoleic acid (C18:2). In particular, Aureobasidium sp. accumulated uncommon fatty acids such as petroselinic acid under conditions induced by glycerol. This fatty acid, which has a double bond in position 6,7 and a melting point of 33 °C, highlights its potential as an alternative to margarine production, as well as a precursor to sophorolipids, estolide esters, soaps, and plastics. Rhodotorula sp. exhibited very long-chain fatty acids such as docosadienoic and docosatrienoic acids in its lipid profile. These findings underscore the biotechnological value of yeasts from lentic aquatic systems as sustainable lipid producers, paving the way for innovations in biofuels, nutraceuticals, and oleochemicals.</p>","PeriodicalId":23703,"journal":{"name":"World journal of microbiology & biotechnology","volume":"41 3","pages":"105"},"PeriodicalIF":4.0,"publicationDate":"2025-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11906551/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143626244","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Vitamin D3 potentiates antimicrobial and antibiofilm activities of streptomycin and thymoquinone against Pseudomonas aeruginosa. 维生素D3增强了链霉素和百里醌对铜绿假单胞菌的抗菌和抗生物膜活性。
IF 4 3区 生物学
World journal of microbiology & biotechnology Pub Date : 2025-03-13 DOI: 10.1007/s11274-025-04304-y
Priyam Biswas, Soham Bose, Sudipta Chakraborty
{"title":"Vitamin D3 potentiates antimicrobial and antibiofilm activities of streptomycin and thymoquinone against Pseudomonas aeruginosa.","authors":"Priyam Biswas, Soham Bose, Sudipta Chakraborty","doi":"10.1007/s11274-025-04304-y","DOIUrl":"10.1007/s11274-025-04304-y","url":null,"abstract":"<p><p>Biofilm formed by Pseudomonas aeruginosa is a three dimensional microbial matrix that confers multidrug resistance properties along with the proficiency to evade the host immune system. The present study aims to determine the combinatorial effects of vitamin D3 (cholecalciferol) with two already reported antibiofilm agents: streptomycin and thymoquinone separately against P. aeruginosa biofilms. The minimum inhibitory concentration of streptomycin, thymoquinone and D3 was found to be 20, 10 and 100 μg/mL respectively. The inhibition of biofilm formation and pre-formed biofilm disintegration properties of streptomycin and thymoquinone alone or in combination with D3 at their sub-MIC concentration was determined by crystal violet staining and confocal laser scanning microscopy. A significant inhibition of metabolic activities like oxygen consumption rate and reduction in quorum sensing related cellular activities like swarming motilities, pyocyanin production and extracellular protease secretion by P. aeruginosa were also observed as a result of this combinatorial effect. Both of these combinatorial applications were found to accumulate ROS in bacterial cells, which has been proved to be one of the main causes of their antibiofilm activity. Effect of these two drug combinations on bacterial lettuce leaf infection was also evaluated. Molecular docking analysis indicated that thymoquinone combined D3 can interact more efficiently with the quorum sensing proteins LasI and LasR. The host cell cytotoxicity of these two combinations was found to be negligible on the murine macrophage cell line. These findings suggest that D3 potentiates the antimicrobial and antibiofilm efficacy of both streptomycin and thymoquinone against P. aeruginosa. Although both combinations have shown significant antibiofilm and antimicrobial potential, combinatorial performances of D3 combined thymoquinone were found to be more promising.</p>","PeriodicalId":23703,"journal":{"name":"World journal of microbiology & biotechnology","volume":"41 3","pages":"104"},"PeriodicalIF":4.0,"publicationDate":"2025-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143617330","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Causal associations between 26 musculoskeletal disorders and gut microbiota: a Mendelian randomization analysis with Bayesian validation. 26种肌肉骨骼疾病与肠道微生物群之间的因果关系:一项具有贝叶斯验证的孟德尔随机分析。
IF 4 3区 生物学
World journal of microbiology & biotechnology Pub Date : 2025-03-13 DOI: 10.1007/s11274-025-04318-6
Yunhao Wang, Yingze Sun, Hongxing Liao
{"title":"Causal associations between 26 musculoskeletal disorders and gut microbiota: a Mendelian randomization analysis with Bayesian validation.","authors":"Yunhao Wang, Yingze Sun, Hongxing Liao","doi":"10.1007/s11274-025-04318-6","DOIUrl":"10.1007/s11274-025-04318-6","url":null,"abstract":"<p><p>Emerging evidence suggests that gut microbiota imbalances may influence the onset of musculoskeletal disorders (MSDs), yet conclusive evidence establishing causation remains limited. This study investigates the causal relationship between gut microbiota and a range of MSDs, aiming to identify potential therapeutic targets. Using data on 211 gut microbiome taxa from a genome-wide association study (GWAS) and summary statistics for 26 MSDs from the Finnish Biobank, we employed Mendelian randomization (MR) with inverse-variance weighting (IVW) as the primary analytical approach, complemented by Bayesian model validation to ensure robust results. Our MR analyses revealed significant causal associations between gut microbiota and nine MSDs within four categories, including osteoporosis (IVW-Beta = 0.011, P = 0.025), rheumatoid arthritis (IVW-Beta = - 0.016, P < 0.001), rotator cuff syndrome (IVW-Beta = - 0.007, P = 0.022), and calcific tendonitis of the shoulder (IVW-Beta = - 0.021, P = 0.034). Bayesian validation underscored the plausibility of these relationships, supporting the potential causal role of gut microbiota in the development of these disorders. Our findings present a library of causal associations that underscore the gut microbiome's role in MSD pathogenesis, providing genetic evidence that highlights specific gut microbiota taxa as prospective therapeutic targets. This research offers novel insights into the pathogenic mechanisms underlying MSDs and points toward new directions for future investigation into microbiome-based therapies.</p>","PeriodicalId":23703,"journal":{"name":"World journal of microbiology & biotechnology","volume":"41 3","pages":"106"},"PeriodicalIF":4.0,"publicationDate":"2025-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11906543/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143626242","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Antibiotic potential and metabolic modulation of Bacillus velezensis VTRNT 01 in response to bacterial elicitors. 韦氏芽孢杆菌VTRNT 01对细菌激发子的抗生素潜力和代谢调节。
IF 4 3区 生物学
World journal of microbiology & biotechnology Pub Date : 2025-03-12 DOI: 10.1007/s11274-025-04311-z
Thanh-Dung Nguyen, Huu-Nghia Duong, Thi-Pha Nguyen, Phu-Tho Nguyen, Huu-Hiep Nguyen, Thi-Tho Nguyen, Ha-Giang Pham, Dieu-Hien Truong, Huu-Thanh Nguyen
{"title":"Antibiotic potential and metabolic modulation of Bacillus velezensis VTRNT 01 in response to bacterial elicitors.","authors":"Thanh-Dung Nguyen, Huu-Nghia Duong, Thi-Pha Nguyen, Phu-Tho Nguyen, Huu-Hiep Nguyen, Thi-Tho Nguyen, Ha-Giang Pham, Dieu-Hien Truong, Huu-Thanh Nguyen","doi":"10.1007/s11274-025-04311-z","DOIUrl":"10.1007/s11274-025-04311-z","url":null,"abstract":"<p><p>Bacterial elicitors are recognized for their ecological role in stimulating plant defenses and enhancing the production of beneficial metabolites. This study explores the antibiotic potential of endophytic Bacillus velezensis VTRNT 01, isolated from Adenosma bracteosum Bonati, under co-cultivation with bacterial elicitors (Staphylococcus aureus, Escherichia coli, and Aeromonas hydrophila). By leveraging these interactions, we aim to unlock the full potential of endophytic bacteria for sustainable applications in agriculture and pharmaceuticals. Using gas chromatography-mass spectrometry (GC-MS) analysis, we identified a total of 42 distinct chemical compounds produced under these conditions. Notably, 15 of these compounds were exclusively induced by the elicitor treatment, suggesting a strong interactive effect between Bacillus velezensis and the elicitors. Among the identified compounds, several have well-documented antimicrobial properties, including benzaldehyde, benzeneacetic acid, and tetradecanoic acid, which were shown to exhibit significant antibacterial activity against common pathogens. These findings demonstrate the potential of bio-elicitor strategies to enhance the biosynthesis of antimicrobial compounds, paving the way for innovative solutions in crop protection and the development of new therapeutic agents.</p>","PeriodicalId":23703,"journal":{"name":"World journal of microbiology & biotechnology","volume":"41 3","pages":"102"},"PeriodicalIF":4.0,"publicationDate":"2025-03-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143606510","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
CRISPR/Cas9-assisted gene editing reveals that EgPKS, a polyketide synthase, is required for the biosynthesis of preussomerins in Edenia gomezpompae SV2. CRISPR/ cas9辅助的基因编辑发现,EgPKS(一种聚酮合成酶)是Edenia gomezpompae SV2中pre - ussomerins的生物合成所必需的。
IF 4 3区 生物学
World journal of microbiology & biotechnology Pub Date : 2025-03-12 DOI: 10.1007/s11274-025-04313-x
Ziqi Zhai, Mengwei Zhang, Ruya Yin, Siji Zhao, Zhen Shen, Yonglin Yang, Xuan Zhang, Jianing Wang, Yifei Qin, Dan Xu, Ligang Zhou, Daowan Lai
{"title":"CRISPR/Cas9-assisted gene editing reveals that EgPKS, a polyketide synthase, is required for the biosynthesis of preussomerins in Edenia gomezpompae SV2.","authors":"Ziqi Zhai, Mengwei Zhang, Ruya Yin, Siji Zhao, Zhen Shen, Yonglin Yang, Xuan Zhang, Jianing Wang, Yifei Qin, Dan Xu, Ligang Zhou, Daowan Lai","doi":"10.1007/s11274-025-04313-x","DOIUrl":"10.1007/s11274-025-04313-x","url":null,"abstract":"<p><p>Edenia gomezpompae, an endophytic fungus derived from plants, produced a diverse array of preussomerins, a type of spirobisnaphthalenes featuring two spiroketal groups, which exhibited significant antibacterial, antifungal, and cytotoxic activities. Structurally, the biosynthesis of preussomerins might be related to the biosynthesis of 1,8-dihydroxynaphthalene (DHN), a precursor of DHN-melanin. However, the absence of efficient gene-editing tools for E. gomezpompae has hindered the biosynthetic study of preussomerins. In this study, we developed a CRISPR/Cas9-based gene editing system for E. gomezpompae SV2 that was isolated from the stem of Setaria viridis, by utilizing the endogenous U6 snRNA promoter to drive sgRNA expression. Using this system, we successfully disrupted the polyketide synthase (PKS)-encoding gene, Egpks, a putative 1,3,6,8-tetrahydroxynaphthalene synthase gene involved in the biosynthesis of DHN-melanin, with an editing efficiency up to 92% and a knockout efficiency of 71% when employing the U6 snRNA-3 promoter. Furthermore, the disrupted mutant (∆Egpks) displayed white hyphae and lost the ability to produce preussomerins. These results provided a foundational tool for genetic manipulation in E. gomezpompae and revealed the role of EgPKS in the biosynthesis of preussomerin-type spirobisnaphthalenes.</p>","PeriodicalId":23703,"journal":{"name":"World journal of microbiology & biotechnology","volume":"41 3","pages":"103"},"PeriodicalIF":4.0,"publicationDate":"2025-03-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143606511","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Metagenomic insights of microbial functions under conventional and conservation agriculture. 传统农业和保护性农业微生物功能的宏基因组研究。
IF 4 3区 生物学
World journal of microbiology & biotechnology Pub Date : 2025-03-11 DOI: 10.1007/s11274-025-04312-y
Samrendra Singh Thakur, Stefany Solano González, Prashanth Suravajhala, Subodh Kumar Jain, Shweta Yadav, Karthik Sankar Narayan, Edwinraj Esack, Yakov Kuzyakov, Anisa Ratnasari
{"title":"Metagenomic insights of microbial functions under conventional and conservation agriculture.","authors":"Samrendra Singh Thakur, Stefany Solano González, Prashanth Suravajhala, Subodh Kumar Jain, Shweta Yadav, Karthik Sankar Narayan, Edwinraj Esack, Yakov Kuzyakov, Anisa Ratnasari","doi":"10.1007/s11274-025-04312-y","DOIUrl":"10.1007/s11274-025-04312-y","url":null,"abstract":"<p><p>Agricultural practices such as conventional (CN) and conservation agriculture (CA) influence the composition and structure of soil microorganisms. We used short reads and genome-resolved metagenomic-based dual sequencing approaches to create a profile of bacterial and archaeal communities in hyperthermic Typic Haplustepts soil after seven years of CA and CN. The most differences in the physico-chemical and biological properties of soil were higher pH, organics carbon, available nitrogen and microbial biomass contents, activities of dehydrogenase, β-glucosidase, and arylsulfatase, found in CA soil. The dominant bacterial taxa under both management types were Pseudomonadota (46-48%), Acidobacteriota (12-13%), Planctomycetota (8-10%), Bacteroidota (7-8%), and Actinomycetota (6-7%). Nitrososphaerota (1.1-1.5%) was the predominant archaeal phyla in CA and CN soils. The alpha diversity was 1.5 times higher in CA compared to CN soils. Fourteen high-quality (HQ) metagenomic-assembled genomes (MAGs) were recovered from both groups. Four HQ metagenome-assembled genomes (MAGs) from the Pseudomonadota phylum were exclusively recovered from the CA soil. The dominance of this phylum in the CA soil might be correlated with its nutrient richness, as certain classes of Pseudomonadota, such as Alpha, Beta-, Gamma-, and Deltaproteobacteria, are known to be copiotrophic. Copiotrophic organisms thrive in nutrient-rich environments, which could explain their prevalence in the CA soil. CAZyme gene analysis showed that Glycoside Hydrolases (GH) and GlycosylTransferases (GT) classes are dominant in the CA group, possibly due to higher substrate availability from the application of crop residues, which provide a rich source of complex carbohydrates. Several biogeochemical gene families related to C1 compounds, hydrogen, oxygen, and sulfur metabolism were enriched in CA soils, suggesting these practices may contribute to a soil environment with increased organic matter content, microbial diversity, and nutrient availability. Overall, CA practices seemed to improve soil health by supporting soil microbial communities abundance.</p>","PeriodicalId":23703,"journal":{"name":"World journal of microbiology & biotechnology","volume":"41 3","pages":"100"},"PeriodicalIF":4.0,"publicationDate":"2025-03-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143597846","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Integrative metabolo-genomics suggests a biosynthetic pathway for tetrangulol in Streptomyces sp. KL110A. 综合代谢基因组学提示链霉菌KL110A中四聚苯胺的生物合成途径。
IF 4 3区 生物学
World journal of microbiology & biotechnology Pub Date : 2025-03-11 DOI: 10.1007/s11274-025-04298-7
Luisa M Trejo-Alarcon, Carolina Cano-Prieto, Ana Calheiros de Carvalho, Daniela Rago, Linda Ahonen, Pablo Cruz-Morales, Cuauhtémoc Licona-Cassani
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