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Complex interplay: The interactions between citrus tristeza virus and its host 复杂相互作用:柑橘tristeza病毒与其宿主之间的相互作用。
IF 2.8 3区 医学
Virology Pub Date : 2025-02-01 DOI: 10.1016/j.virol.2024.110388
Maryam Khalilzadeh , Dirk Jacobus Aldrich , Hans Jacob Maree , Amit Levy
{"title":"Complex interplay: The interactions between citrus tristeza virus and its host","authors":"Maryam Khalilzadeh ,&nbsp;Dirk Jacobus Aldrich ,&nbsp;Hans Jacob Maree ,&nbsp;Amit Levy","doi":"10.1016/j.virol.2024.110388","DOIUrl":"10.1016/j.virol.2024.110388","url":null,"abstract":"<div><div>Citrus tristeza virus (CTV) is one of the largest and most economically important RNA viruses infecting plants. CTV's interactions with various citrus hosts can result in three diseases: quick decline, stem pitting, or seedling yellows. Studying CTV poses several challenges owing to its significant genetic diversity and the highly specific occurrence of disease symptoms when different genotypes infect different citrus hosts. Considerable progress has been made to functionally characterize the virus-host interactions involved in the induction of CTV's three diseases, revealing that the four CTV ORFs (<em>p33</em>, <em>p18</em>, <em>p13</em> and <em>p23</em>) play significant roles in determining the pathogenicity of CTV infections. These ORFs are unique to CTV and are not conserved among other members of the family <em>Closteroviridae.</em> This minireview aims to capture the complexity of the factors that have been shown to be involved in CTV disease induction and highlights recent work that provides novel insights into this pathosystem.</div></div>","PeriodicalId":23666,"journal":{"name":"Virology","volume":"603 ","pages":"Article 110388"},"PeriodicalIF":2.8,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142960906","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Expression and purification of PNGase F protein in yeast and its anti-PRV activity PNGase F蛋白在酵母中的表达纯化及其抗prv活性研究。
IF 2.8 3区 医学
Virology Pub Date : 2025-02-01 DOI: 10.1016/j.virol.2025.110393
Haonan Zhang , Yu Jiang , Gang Ding , Jingyu Chen , Yuda Liu , Furong Wang , Xiaolan Yu
{"title":"Expression and purification of PNGase F protein in yeast and its anti-PRV activity","authors":"Haonan Zhang ,&nbsp;Yu Jiang ,&nbsp;Gang Ding ,&nbsp;Jingyu Chen ,&nbsp;Yuda Liu ,&nbsp;Furong Wang ,&nbsp;Xiaolan Yu","doi":"10.1016/j.virol.2025.110393","DOIUrl":"10.1016/j.virol.2025.110393","url":null,"abstract":"<div><div>Pseudorabies virus (Pseudorabiesvirus, PRV) has caused huge economic losses to the global pig industry. In recent years, it has been reported that there are PRV mutants, but the traditional vaccine can not completely prevent or control the infection of PRV, so there is an urgent need to develop new broad-spectrum anti-disease drugs for prevention and treatment. PNGase F from bacteria can catalyze the hydrolysis of oligosaccharides linked to asparagine residues on peptides, so we speculate that PNGase F can inhibit virus infection by removing the glycosylation of virus membrane glycoproteins. In this study, PNGase F protein was highly expressed and purified in Pichia pastoris, and the deglycosylation activity of PNGase F expressed in Pichia pastoris was verified. In vitro, 15 μM could significantly inhibit the proliferation of virus in cells. The results of cytotoxicity test showed that PNGase F was not toxic to many cells. To further evaluate the effect of PNGase F in different stages of virus infection, it was found that PNGase F had significant inhibitory effect on virus adsorption and invasion. In vivo experiments in mice, PNGase F could significantly inhibit the replication of PRV Ea strain in mice and inhibit PRV, reduced brain lesions. Our experiments show that PNGase F expressed by yeast can inhibit PRV infection in vitro and in vitro, and its inhibitory mechanism is preliminarily discussed, which can provide a new reference for the development of broad-spectrum antiviral drugs based on PNGase F.</div></div>","PeriodicalId":23666,"journal":{"name":"Virology","volume":"603 ","pages":"Article 110393"},"PeriodicalIF":2.8,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143019333","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
STAT1 and herpesviruses: Making lemonade from lemons
IF 2.8 3区 医学
Virology Pub Date : 2025-02-01 DOI: 10.1016/j.virol.2024.110364
Erika R. Johansen, Vera L. Tarakanova
{"title":"STAT1 and herpesviruses: Making lemonade from lemons","authors":"Erika R. Johansen,&nbsp;Vera L. Tarakanova","doi":"10.1016/j.virol.2024.110364","DOIUrl":"10.1016/j.virol.2024.110364","url":null,"abstract":"<div><div>Signal transducer and activator of transcription 1 (STAT1) is engaged downstream of interferon and other cytokine receptors and has traditionally been defined as an antiviral effector of the host. Consistent with the antiviral role, genetic deficiency of STAT1 leads to increased replication of diverse viruses and severe disease that can lead to host's mortality, including in rare human cases of STAT1 insufficiency. Surprisingly, excessive STAT1 activation recently identified in patients with heterozygous gain-of-function STAT1 mutations and subsequently modeled in laboratory mice, also leads to poor control of select virus infections, including herpesviruses. Thus, the function of STAT1 in viral infections might be more nuanced and extend beyond the canonical antiviral role of this host factor. This review will compare the findings in the animal models and human cases to discuss the role of STAT1 in herpesvirus infection of the intact host, including the emerging cell type-specific proviral roles of STAT1.</div></div>","PeriodicalId":23666,"journal":{"name":"Virology","volume":"603 ","pages":"Article 110364"},"PeriodicalIF":2.8,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143082843","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Deciphering the hepatitis E virus ORF1: Functional domains, protein processing, and patient-derived mutations 解密戊型肝炎病毒 ORF1:功能域、蛋白质加工和源自患者的突变。
IF 2.8 3区 医学
Virology Pub Date : 2025-02-01 DOI: 10.1016/j.virol.2024.110350
Fei Zhang , Ling-Dong Xu , Shiying Wu , Bin Wang , Pinglong Xu , Yao-Wei Huang
{"title":"Deciphering the hepatitis E virus ORF1: Functional domains, protein processing, and patient-derived mutations","authors":"Fei Zhang ,&nbsp;Ling-Dong Xu ,&nbsp;Shiying Wu ,&nbsp;Bin Wang ,&nbsp;Pinglong Xu ,&nbsp;Yao-Wei Huang","doi":"10.1016/j.virol.2024.110350","DOIUrl":"10.1016/j.virol.2024.110350","url":null,"abstract":"<div><div>Hepatitis E virus (HEV) is a major cause of acute and chronic hepatitis in humans. The HEV open reading frames (ORF1) encodes a large non-structural protein essential for viral replication, which contains several functional domains, including helicase and RNA-dependent RNA polymerase. A confusing aspect is that, while RNA viruses typically encode large polyproteins that rely on their enzymatic activity for processing into functional units, the processing of the ORF1 protein and the mechanisms involved remain unclear. The ORF1 plays a pivotal role in the viral life cycle, thus mutations in this region, especially those occurring under environmental pressures such as during antiviral drug treatment, could significantly affect viral replication and survival. Here, we summarize the recent advances in the functional domains, processing, and mutations of ORF1. Gaining a deeper understanding of HEV biology, particularly focusing on ORF1, could facilitate the development of new strategies to control HEV infections.</div></div>","PeriodicalId":23666,"journal":{"name":"Virology","volume":"603 ","pages":"Article 110350"},"PeriodicalIF":2.8,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142831441","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Intra-host variability of SARS-CoV-2: Patterns, causes and impact on COVID-19 SARS-CoV-2 的宿主内变异:模式、原因和对 COVID-19 的影响。
IF 2.8 3区 医学
Virology Pub Date : 2025-02-01 DOI: 10.1016/j.virol.2024.110366
Leandro R. Jones
{"title":"Intra-host variability of SARS-CoV-2: Patterns, causes and impact on COVID-19","authors":"Leandro R. Jones","doi":"10.1016/j.virol.2024.110366","DOIUrl":"10.1016/j.virol.2024.110366","url":null,"abstract":"<div><div>Intra-host viral variability is related to pathogenicity, persistence, drug resistance, and the emergence of new clades. This work reviews the large amount of data on SARS-CoV-2 intra-host variability accumulated to date, addressing known and potential implications in COVID-19 and the emergence of VOCs and lineage-defining mutations. Topics covered include the distribution of intra-host polymorphisms across the genome, the corresponding mutational signatures, their patterns of emergence and extinction throughout infection, and the processes governing their abundance, frequency, and type (synonymous, nonsynonymous, indels, nonsense). Besides, evidence is reviewed that the virus can replicate and mutate in isolation at different anatomical compartments, which may imply that what we have learned from respiratory samples could be part of a broader picture.</div></div>","PeriodicalId":23666,"journal":{"name":"Virology","volume":"603 ","pages":"Article 110366"},"PeriodicalIF":2.8,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142901410","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
LEF3 phosphorylation attenuates the replication of Bombyx mori nucleopolyhedrovirus by suppressing its interaction with alkaline nuclease LEF3磷酸化通过抑制家蚕核多角体病毒与碱性核酸酶的相互作用而减弱其复制。
IF 2.8 3区 医学
Virology Pub Date : 2025-02-01 DOI: 10.1016/j.virol.2024.110369
Chaoguang Gu , Yuqian Mo , Jiaqi Li , Xizhen Zhang , Siqi Xu , Meng Miao , Yanping Quan , Wei Yu
{"title":"LEF3 phosphorylation attenuates the replication of Bombyx mori nucleopolyhedrovirus by suppressing its interaction with alkaline nuclease","authors":"Chaoguang Gu ,&nbsp;Yuqian Mo ,&nbsp;Jiaqi Li ,&nbsp;Xizhen Zhang ,&nbsp;Siqi Xu ,&nbsp;Meng Miao ,&nbsp;Yanping Quan ,&nbsp;Wei Yu","doi":"10.1016/j.virol.2024.110369","DOIUrl":"10.1016/j.virol.2024.110369","url":null,"abstract":"<div><div>Late expression factor 3 (LEF3), a multifunctional single-stranded DNA binding protein encoded by baculoviruses, is indispensable for viral DNA replication and plays a pivotal role in viral infection. Our previous quantitative analysis of phosphorylomics revealed that the phosphorylation levels of two serine residues (S8 and S25) located in LEF3 nuclear localization sequence were significantly up-regulated after <em>Bombyx mori</em> nucleopolyhedrovirus (BmNPV) infection, but the underlying mechanism remained unknown. To investigate the impact of phosphorylation on BmNPV infection, site-direct mutagenesis was performed on LEF3 to obtain phosphorylated mimic (S/D) or dephosphorylated mimic (S/A) mutants. The results demonstrated that the viral replication and proliferation were inhibited by phosphorylation of S8 or S25. Furthermore, we found that the N-terminal 125 amino acids region was responsible for interacting with virus-encoded alkaline nuclease, but this interaction could be suppressed by the phosphorylation. Our findings indicated that phosphorylation may serve as an antiviral strategy for host.</div></div>","PeriodicalId":23666,"journal":{"name":"Virology","volume":"603 ","pages":"Article 110369"},"PeriodicalIF":2.8,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142904733","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
UL24 herpesvirus determinants of pathogenesis: Roles in virus-host interactions
IF 2.8 3区 医学
Virology Pub Date : 2025-02-01 DOI: 10.1016/j.virol.2024.110376
Angela Pearson, Amel Bouhamar
{"title":"UL24 herpesvirus determinants of pathogenesis: Roles in virus-host interactions","authors":"Angela Pearson,&nbsp;Amel Bouhamar","doi":"10.1016/j.virol.2024.110376","DOIUrl":"10.1016/j.virol.2024.110376","url":null,"abstract":"<div><div>Members of the <em>UL24</em> herpesvirus gene family are determinants of pathogenesis. The gene is widely conserved across the <em>Orthoherpesviridae</em> family, also commonly referred to as <em>Herpesviridae</em>. In this review, the impact of <em>UL24</em> homologs on pathogenesis as studied with different model systems is presented, as well as mechanistic aspects related to the different roles of UL24 proteins in virus-host cell interactions. The targeting of <em>UL24</em> for the development of therapeutic applications is also discussed.</div></div>","PeriodicalId":23666,"journal":{"name":"Virology","volume":"603 ","pages":"Article 110376"},"PeriodicalIF":2.8,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143082925","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
(R)evolution of Viruses: Introduction to biothermodynamics of viruses (R)病毒的进化:病毒生物热力学导论。
IF 2.8 3区 医学
Virology Pub Date : 2025-02-01 DOI: 10.1016/j.virol.2024.110319
Marko E. Popović , Vojin Tadić , Marta Popović
{"title":"(R)evolution of Viruses: Introduction to biothermodynamics of viruses","authors":"Marko E. Popović ,&nbsp;Vojin Tadić ,&nbsp;Marta Popović","doi":"10.1016/j.virol.2024.110319","DOIUrl":"10.1016/j.virol.2024.110319","url":null,"abstract":"<div><div>As of 26 April 2024, the International Committee on Taxonomy of Viruses has registered 14690 virus species. Of these, only several dozen have been chemically and thermodynamically characterized. Every virus species is characterized by a specific empirical formula and thermodynamic properties - enthalpy, entropy and Gibbs energy. These physical properties are used in a mechanistic model of virus-host interactions at the cell membrane and in the cytoplasm. This review article presents empirical formulas and Gibbs energies for all major variants of SARS-CoV-2. This article also reports and suggests a mechanistic model of evolutionary changes, with the example of time evolution of SARS-CoV-2 from 2019 to 2024.</div></div>","PeriodicalId":23666,"journal":{"name":"Virology","volume":"603 ","pages":"Article 110319"},"PeriodicalIF":2.8,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142793103","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Serologic differentiation between wild-type and cell-adapted African swine fever virus infections: A novel DIVA strategy using the MGF100-1L protein 野生型和细胞适应型非洲猪瘟病毒感染的血清学分化:使用MGF100-1L蛋白的一种新的DIVA策略
IF 2.8 3区 医学
Virology Pub Date : 2025-02-01 DOI: 10.1016/j.virol.2024.110349
Theeradej Thaweerattanasinp, Janya Saenboonrueng, Asawin Wanitchang, Kanjana Srisutthisamphan, Nathiphat Tanwattana, Ratchanont Viriyakitkosol, Challika Kaewborisuth, Anan Jongkaewwattana
{"title":"Serologic differentiation between wild-type and cell-adapted African swine fever virus infections: A novel DIVA strategy using the MGF100-1L protein","authors":"Theeradej Thaweerattanasinp,&nbsp;Janya Saenboonrueng,&nbsp;Asawin Wanitchang,&nbsp;Kanjana Srisutthisamphan,&nbsp;Nathiphat Tanwattana,&nbsp;Ratchanont Viriyakitkosol,&nbsp;Challika Kaewborisuth,&nbsp;Anan Jongkaewwattana","doi":"10.1016/j.virol.2024.110349","DOIUrl":"10.1016/j.virol.2024.110349","url":null,"abstract":"<div><div>African swine fever virus (ASFV) poses a significant threat to the global swine industry and requires improved control strategies. Here, we developed a Differentiating Infected from Vaccinated Animals (DIVA) assay based on the MGF100-1L protein, which is absent in a cell-adapted ASFV strain lacking several multigene family (MGF) genes. We analyzed seven deleted genes, including MGF genes, from the right variable region of the ASFV genome against sera from convalescent pigs. MGF100-1L showed significant reactivity and was produced as a recombinant protein for use in an enzyme-linked immunosorbent assay (ELISA). The assay, with a cut-off value of 0.284, successfully differentiated between naive and infected pigs with 100% accuracy. More importantly, pigs infected with the cell-adapted ASFV showed no significant change in ELISA readouts after 27 days post-infection. However, when these pigs were subsequently challenged with wild-type virus, MGF100-1L reactivity increased significantly by 21 days post-challenge. This study demonstrates the potential of MGF100-1L as a DIVA marker for ASFV, which offers a promising tool to distinguish between infections with wild-type ASFV and those with cell-adapted variants lacking specific MGF genes, thereby improving ASFV surveillance and control strategies.</div></div>","PeriodicalId":23666,"journal":{"name":"Virology","volume":"603 ","pages":"Article 110349"},"PeriodicalIF":2.8,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142831488","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Isolation and molecular characterization of an enteric isolate of the genotype-Ia bovine coronavirus with notable mutations in the receptor binding domain of the spike glycoprotein 基因型-Ia 牛冠状病毒肠道分离株的分离和分子鉴定,该分离株在尖峰糖蛋白的受体结合域有显著突变。
IF 2.8 3区 医学
Virology Pub Date : 2025-02-01 DOI: 10.1016/j.virol.2024.110313
Abid Ullah Shah , Phillip Gauger , Maged Gomaa Hemida
{"title":"Isolation and molecular characterization of an enteric isolate of the genotype-Ia bovine coronavirus with notable mutations in the receptor binding domain of the spike glycoprotein","authors":"Abid Ullah Shah ,&nbsp;Phillip Gauger ,&nbsp;Maged Gomaa Hemida","doi":"10.1016/j.virol.2024.110313","DOIUrl":"10.1016/j.virol.2024.110313","url":null,"abstract":"<div><div>BCoV new isolate was plaque purified, isolated, and propagated <em>in vitro</em> using MDBK and HRT-18. The full-length genome sequencing of this new BCoV isolate (31 Kbs) was drafted and deported in the GenBank. The genome organization is (5′-UTR-Gene-1-32kDa-HE-S-4.9 kDa-4.8 kDa-12.7 kDa-E-M-N-UTR-3′). Phylogenetic analysis based on the sequences of (the full-length genome, S, HE, and N) showed that the BCoV-13 clustered with other North American BCoV genotype I members. The sequence analysis shows several synonymous mutations among various domains of the S glycoprotein, especially the receptor binding domain. We found nine notable nucleotide deletions immediately downstream of the RNA binding domain of the nucleocapsid gene. Further gene function studies are encouraged to study the function of these mutations on the BCoV molecular pathogenesis and immune regulation. This research enhances our understanding of BCoV genomics and contributes to improved diagnostic and control measures for BCoV infections in cattle.</div></div>","PeriodicalId":23666,"journal":{"name":"Virology","volume":"603 ","pages":"Article 110313"},"PeriodicalIF":2.8,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142840719","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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