Protist最新文献

{"title":"A New Mayorella Species Isolated from the Mariana Trench Area (Pacific Ocean)","authors":"Xiaoli Lei ,&nbsp;Xiaojuan Chen ,&nbsp;Jianming Chen ,&nbsp;Chen Liang","doi":"10.1016/j.protis.2023.125958","DOIUrl":"10.1016/j.protis.2023.125958","url":null,"abstract":"<div><p>In this paper, we describe a new naked amoeba species, <em>Mayorella marianaensis</em> sp. n., order Dermamoebida, isolated from the bottom of the Pacific Ocean (&gt;3,000 m depth) in the vicinity of the Mariana Trench, based on morphological and molecular data. The newly discovered species was identified based on morphological and molecular data. This is the first time that a <em>Mayorella</em> species was discovered in the deep sea (&gt;1,000 m). <em>Mayorella marianaensis</em> is an irregularly rectangular naked amoeba (30–120 × 11–60 µm), with a narrow frontal hyaline area. Four to 15 conical sub-pseudopodia, and three kinds of floating forms are identified. Trophozoites have a thick cell coat consisting of two distinct layers. The small subunit ribosomal RNA gene phylogeny showed that <em>M</em>. <em>marianaensis</em> is classified into Dermamoebida, and is a sister clade to other <em>Mayorella</em> species whose sequences are available. BLAST analysis revealed that <em>M</em>. <em>marianaensis</em> is most similar to <em>Coronamoeba villafranca</em> and <em>Mayorella</em> sp. JJP-2003, with sequence identities of 92.43% and 88.30%, respectively.</p></div>","PeriodicalId":20781,"journal":{"name":"Protist","volume":"174 3","pages":"Article 125958"},"PeriodicalIF":2.5,"publicationDate":"2023-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10005854","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"In vitro Evaluation the Efficacy of Some New Plant Extracts and Biocides on the Viability of Acanthamoeba castellanii","authors":"Anas Abdullah Hamad","doi":"10.1016/j.protis.2023.125966","DOIUrl":"10.1016/j.protis.2023.125966","url":null,"abstract":"<div><p><span>The purpose of this study was to assess the efficacy of certain plant extracts and to compare them with current biocides on the viability of </span><span><em>Acanthamoeba</em><em> castellanii</em></span> cysts and trophozoites in vitro. Amoebicidal and cysticidal assays were performed against both trophozoites and cysts of <span><em>Acanthamoeba castellanii</em></span><span> (ATCC 50370). Ten plant extracts were evaluated alongside the current agents included polyhexamethylene biguanide (PHMB), octenidine and chlorhexidine digluconate. </span><em>A. castellanii</em> (ATCC 50370) was treated to serial two-fold dilutions of the test compounds and extracts in microtitre plate wells to investigate the effect on trophozoites and cysts of <em>A. castellanii</em><span> (ATCC 50370). Furthermore, the toxicity of each of the test compounds and extracts were assessed towards a mammalian cell line. Minimum trophozoite inhibitory concentration (MTIC), minimum trophozoite amoebicidal concentration (MTAC), and minimum cysticidal concentration (MCC) were used to establish </span><em>A. castellanii</em> (ATCC 50370) in vitro sensitivity. The findings of this research revealed that the biguanides PHMB, chlorhexidine, and octenidine all had excellent effectiveness against trophozoites and cysts of <em>A. castellanii</em> (ATCC 50370)<em>.</em> The plant extracts testing results showed that, great activity against trophozoites and cysts of<!--> <em>A. castellanii</em> (ATCC 50370) at lower concentrations. This is the first study to demonstrate that the Proskia plant extract had the lowest MCC value, which was 3.9 µg/mL. The time kill experiment confirmed this finding, as this extract reduced cysts of <em>A. castellanii</em> (ATCC 50370) by more than 3-log at 6 hour and by 4-log after 24 hour. The anti-amoebic efficacy of new plant extracts on the viability of <em>A. castellanii</em> (ATCC 50370) cysts and trophozoites was comparable to existing biocide treatments and was not toxic when tested on a mammalian cell line. This could be a promising novel <em>Acanthamoeba</em> treatment by using the tested plant extracts as a monotherapy against trophozoites and cysts.</p></div>","PeriodicalId":20781,"journal":{"name":"Protist","volume":"174 3","pages":"Article 125966"},"PeriodicalIF":2.5,"publicationDate":"2023-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10007918","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Microalga–bacteria Community with High Level Carbon Dioxide Acclimation and Nitrogen-fixing Ability","authors":"Haruki Iida,&nbsp;Nobuhiro Aburai,&nbsp;Katsuhiko Fujii","doi":"10.1016/j.protis.2023.125957","DOIUrl":"10.1016/j.protis.2023.125957","url":null,"abstract":"<div><p>Microalgal conversion of high-level CO₂ in industrial flue gas to value-added products is attractive technology for mitigating global warming. However, reduction of microalgal production costs for medium ingredients, particularly nitrogen salts, is essential. The use of atmospheric nitrogen as a nitrogen source for microalgal cultivation will dramatically reduce its production costs. We attempted to enrich a microalga–bacteria community, which fixes both CO₂ and atmospheric nitrogen under high level CO₂. By cultivating biofilm recovered from the surface of cobbles in a riverbank, a microalgal flora which grows in a nitrogen salts-free medium under 10% CO₂ was enriched, and the coccoid microalgal strain MP5 was isolated from it. Phylogenetic analysis revealed that the strain MP5 belongs to the genus <em>Coelastrella</em>, and the closest known species was <em>C. terrestris</em>. With PCR–DGGE analysis, it was found that the enriched microalgal community includes bacteria, some of which are suggested diazotrophs. The addition of bactericides in culture medium inhibited MP5 growth, even though the strain MP5 is eukaryotic. Growth of bacteria-free MP5 was stimulated by addition of <em>Agrobacterium</em> sp. isolates in nitrogen salts-free medium, suggesting that MP5 and the bacteria have responsibility for photosynthetic carbon fixation and nitrogen fixation, respectively.</p></div>","PeriodicalId":20781,"journal":{"name":"Protist","volume":"174 3","pages":"Article 125957"},"PeriodicalIF":2.5,"publicationDate":"2023-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9647679","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Sterol Composition of the Peridinin-Containing Dinoflagellate Gertia stigmatica, a Member of the Kareniaceae without a Canonical Haptophyte-Derived Plastid","authors":"Jeffrey D. Leblond,&nbsp;Kyra Sabir,&nbsp;Henry L. Whittemore","doi":"10.1016/j.protis.2023.125939","DOIUrl":"10.1016/j.protis.2023.125939","url":null,"abstract":"<div><p><em>Gertia stigmatica</em><span> is a recently described member of the Kareniaceae with a peridinin-containing plastid rather than the aberrant, haptophyte-derived, tertiary plastid found in canonical Kareniaceae genera such as </span><span><em>Karenia</em></span>, <span><em>Karlodinium</em></span>, and <em>Takayama</em>. <em>G. stigmatica</em> provides a unique opportunity to compare biochemical traits, such as sterol composition, between these two fundamentally different types of Kareniaceae. To this point, canonical members of the Kareniaceae have been observed to typically produce a set of 4α-methyl-substituted, Δ⁸⁽¹⁴⁾-nuclear-unsaturated major sterols, such as (24<em>R</em>)-4α-methyl-5α-ergosta-8(14),22-dien-3β-ol (gymnodinosterol) and 27-<em>nor</em>-(24<em>R</em><span>)-4α-methyl-5α-ergosta-8(14),22-dien-3β-ol (brevesterol), which are very uncommon throughout other members of the class Dinophyceae. Our objective was to compare the sterols of </span><em>G. stigmatica</em> to canonical Kareniaceae to elucidate whether these same distinctive sterols are found, with our hypothesis being that they would because <em>G. stigmatica</em> is indeed a member of the Kareniaceae. Contrary to our hypothesis, <em>G. stigmatica</em> lacks gymnodinosterol and brevesterol, with its sterols instead dominated by 4-desmethyl sterols, such as cholesterol, 24-methylcholesta-5,22E-dien-3β-ol, and the unusual tri-unsaturated sterols ergosta-5,8(14),22E-trien-3β-ol and cholesta-5,8(14),22E-trien-3β-ol. No sterols were found to possess a 4α-methyl substituent or a single Δ⁸⁽¹⁴⁾ nuclear unsaturation. Thus, <em>G. stigmatica</em>'s sterol composition as a member of the Kareniaceae is atypical.</p></div>","PeriodicalId":20781,"journal":{"name":"Protist","volume":"174 2","pages":"Article 125939"},"PeriodicalIF":2.5,"publicationDate":"2023-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9627119","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Characterisation and Cultivation of New Lineages of Colponemids, a Critical Assemblage for Inferring Alveolate Evolution","authors":"Andrea S. Gigeroff ,&nbsp;Yana Eglit,&nbsp;Alastair G.B. Simpson","doi":"10.1016/j.protis.2023.125949","DOIUrl":"10.1016/j.protis.2023.125949","url":null,"abstract":"<div><p><span><span><span>There are several alveolate groups outside the well-studied trio – </span>ciliates<span>, dinoflagellates<span>, and apicomplexans – that are crucial for understanding the evolution of this major taxon. One such assemblage is the “colponemids”, which are eukaryotrophic biflagellates, usually with a ventral groove associated with the posterior flagellum. Previous </span></span></span>phylogenetic<span> studies show colponemids forming up to three distinct deep branches within alveolates (e.g. sister groups to Myzozoa or all other alveolates). We have developed dieukaryotic (predator–prey) cultures of four colponemid isolates. One represents the first stable culture of the halophile </span></span><em>Palustrimonas</em> (feeding on <em>Pharyngomonas</em><span>), while SSU rDNA phylogenies show the other isolates as two distinct new lineages. </span><em>Neocolponema saponarium</em><span> gen. et sp. nov. is a swimming alkaliphile<span> with a large groove, which feeds on a kinetoplastid. </span></span><em>Loeffela hirca</em> gen. et sp. nov. is halophilic, has a subtle groove, usually moves along surfaces, and feeds on <em>Pharyngomonas</em> and <em>Percolomonas</em><span>. Prey capture<span> in both new genera<span> is raptorial<span>, involves a specialized structure/region to the right of the proximal posterior flagellum, and presumed extrusomes. The relationships amongst Myzozoa, ciliates, and the (now) five described colponemid clades are unresolved, signaling that colponemid diversity represents both a challenge and important resource for tracing deep alveolate evolution.</span></span></span></span></p></div>","PeriodicalId":20781,"journal":{"name":"Protist","volume":"174 2","pages":"Article 125949"},"PeriodicalIF":2.5,"publicationDate":"2023-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9636744","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"25 years of Protist: A thank you to Editor-in-Chief Michael Melkonian","authors":"R. Ellen R. Nisbet ,&nbsp;Christopher J. Howe","doi":"10.1016/j.protis.2023.125947","DOIUrl":"10.1016/j.protis.2023.125947","url":null,"abstract":"","PeriodicalId":20781,"journal":{"name":"Protist","volume":"174 2","pages":"Article 125947"},"PeriodicalIF":2.5,"publicationDate":"2023-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9418164","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Prevalence and Subtype Distribution of Blastocystis in Tibetan Sheep in Qinghai Province, Northwestern China","authors":"Fan Yang ,&nbsp;Jing-min Gou ,&nbsp;Bing-ke Yang ,&nbsp;Jia-yue Du ,&nbsp;Hui-zhong Yao ,&nbsp;Mei Ren ,&nbsp;Qing Lin","doi":"10.1016/j.protis.2023.125948","DOIUrl":"10.1016/j.protis.2023.125948","url":null,"abstract":"<div><p><em>Blastocystis</em><span> is one of the most common intestinal protists in humans and a great number of animals, including sheep and goats. High prevalence and multiple subtypes of </span><em>Blastocystis</em> have been reported in sheep in several regions of China and elsewhere. However, there is a dearth of knowledge about <em>Blastocystis</em> in Tibetan sheep. A total of 761 fecal samples were collected from Tibetan sheep in seven counties of Qinghai Province, northwestern China, and were examined for the prevalence and subtypes of <em>Blastocystis</em><span> using molecular technology based on the partial small subunit ribosomal RNA gene of </span><em>Blastocystis</em>. The overall prevalence of <em>Blastocystis</em><span> in the investigated Tibetan sheep was 7.5% (57/761) using PCR and DNA Sanger sequencing, and differences in prevalence were observed among the ruminants from the seven counties (</span><em>P</em> &lt; 0.01), and across four seasons (<em>P</em><span> &lt; 0.01). Sequence analysis revealed five subtypes (ST14 (57.9%), ST10 (26.3%), ST12 (5.3%), ST21 (5.3%), and ST30 (5.3%)) of </span><em>Blastocystis</em> sp. in these Tibetan sheep, with ST14 as the predominant subtype. To our knowledge, this is the first report of <em>Blastocystis</em> colonization in Tibetan sheep.</p></div>","PeriodicalId":20781,"journal":{"name":"Protist","volume":"174 2","pages":"Article 125948"},"PeriodicalIF":2.5,"publicationDate":"2023-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9627175","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"The Effect of pH and Salinity on the Toxicity and Growth of the Golden Alga, Prymnesium parvum","authors":"David A. Caron ,&nbsp;Alle A.Y. Lie ,&nbsp;Tom Buckowski ,&nbsp;Jim Turner ,&nbsp;Kevin Frabotta","doi":"10.1016/j.protis.2022.125927","DOIUrl":"10.1016/j.protis.2022.125927","url":null,"abstract":"<div><p>Bioassays using cultures of the toxic haptophyte <em>Prymnesium parvum</em> and the ciliate <em>Cyclidium</em> sp. as prey were conducted to test the effect of pH (range = 6.5 – 8.5), salinity (range = 1.50 – 7.50‰), and a combination of pH and salinity on the toxicity of <em>P. parvum</em>. pH had a significant effect on <em>P. parvum</em> toxicity. Toxicity was rapidly (within 24 hr) induced by increasing pH of the medium, or reduced by lowering pH. Conversely, lowering salinity reduced toxicity, albeit less effectively compared to pH, and <em>P. parvum</em> cells remained toxic at the lowest values tested (1.50‰ at pH 7.5). An additional effect between pH and salinity was also observed: low salinity combined with low pH led to not only decreased toxicity, but also resulted in lower <em>P. parvum</em> growth rates. Such effects of pH and salinity on <em>P. parvum</em> growth and toxicity provide insight into the environmental factors supporting community dominance and toxic blooms of the alga.</p></div>","PeriodicalId":20781,"journal":{"name":"Protist","volume":"174 1","pages":"Article 125927"},"PeriodicalIF":2.5,"publicationDate":"2023-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9353294","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Introduction to the Special Issue: Bland J. Finlay: Uncovering the Unseen World of Microbes","authors":"Genoveva F. Esteban,&nbsp;Stephen C. Maberly","doi":"10.1016/j.protis.2022.125926","DOIUrl":"10.1016/j.protis.2022.125926","url":null,"abstract":"","PeriodicalId":20781,"journal":{"name":"Protist","volume":"174 1","pages":"Article 125926"},"PeriodicalIF":2.5,"publicationDate":"2023-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9252839","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Protist Diversity Responses to Experimental N Deposition in Biological Crusts of a Semiarid Mediterranean Ecosystem","authors":"Blanca Pérez-Uz ,&nbsp;Virginia C. Galfione ,&nbsp;Raul Ochoa-Hueso ,&nbsp;Mercedes Martín-Cereceda","doi":"10.1016/j.protis.2022.125929","DOIUrl":"10.1016/j.protis.2022.125929","url":null,"abstract":"<div><p>Biological soil crusts (BSC) are associations of different macro and microorganisms and aggregated soil particles located on the surface of soils in many different habitats. BSC harbour a diverse and complex community of ciliates and testate amoebae. These phagotrophic protists play an important role in C and N recycling in soil ecosystems but have not been frequently studied in BSC. In this context, the effects of three increasing N inputs on ciliates and testate amoebae in crusts from a semi-arid Mediterranean ecosystem were evaluated. A field experiment with artificial N-deposition was designed to mimic the effects caused by anthropogenic N depositions. The results have shown that the protist populations of these semi-arid Mediterranean environments have lower species richness than other soil environments. The increase in N produces a net loss of diversity in the populations studied and shifts in the community structure. It has also been shown that some ciliates and testate amoebae, due to their population responses to increased N concentrations, could potentially be used as bio-indicators of N contamination in these BSCs.</p></div>","PeriodicalId":20781,"journal":{"name":"Protist","volume":"174 1","pages":"Article 125929"},"PeriodicalIF":2.5,"publicationDate":"2023-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9411431","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}