Oleg N. Shchepin , Ángela López Villalba , Maho Inoue , Ilya S. Prikhodko , Daria A. Erastova , Mikhail V. Okun , Jan Woyzichovski , Yuka Yajima , Vladimir I. Gmoshinskiy , Gabriel Moreno , Yuri K. Novozhilov , Martin Schnittler
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The results of a haplotype web analysis, Bayesian species delimitation under a multispecies coalescent model, and phylogenetic analyses on concatenated alignments support a splitting approach that distinguishes six taxa: <em>Diderma alpinum</em>, <em>D. europaeum</em>, <em>D. kamchaticum, D. meyerae</em>, <em>D. microcarpum</em> and <em>D. niveum</em>. The first two approaches also support the separation of <em>Diderma alpinum</em> into two species with allopatric distribution. An extended dataset of 800 specimens (mainly from Europe) that were barcoded with 18S rDNA revealed only barcode variants similar to those in the species characterized by the first data set, and showed an uneven distribution of these species in the Northern Hemisphere: <em>Diderma microcarpum</em> and <em>D. alpinum</em> were the only species found in all seven intensively sampled mountain regions. 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引用次数: 0
摘要
Diderma属的绒毛状物种在鉴定上具有挑战性,在物种划分上存在几种相互竞争的观点。我们分析了 102 份进行了 2 或 3 个非连锁基因测序的裸裂稃属样本,以确定目前的分类处理方法中哪一种更能得到分子物种划界方法的支持。单倍型网络分析、多物种聚合模型下的贝叶斯物种划界以及并列排列的系统发育分析的结果都支持一种将六个类群区分开来的分裂方法:D. kamchaticum、D. meyerae、D. microcarpum 和 D. niveum。前两种方法也支持将阿尔卑斯蝶分为两个物种,并进行同域分布。用 18S rDNA 对 800 个标本(主要来自欧洲)进行条形码编码的扩展数据集显示,只有条形码变体与第一个数据集所描述的物种相似,并显示这些物种在北半球的分布不均衡:Diderma microcarpum和D. alpinum是在所有七个密集采样山区发现的唯一物种。作为 DNA 条形码的部分 18S rDNA 序列提供了清晰的特征,可明确识别裸子植物中的 Diderma 属,包括 D. alpinum 中的两个假定物种。
DNA barcodes reliably differentiate between nivicolous species of Diderma (Myxomycetes, Amoebozoa) and reveal regional differences within Eurasia
The nivicolous species of the genus Diderma are challenging to identify, and there are several competing views on their delimitation. We analyzed 102 accessions of nivicolous Diderma spp. that were sequenced for two or three unlinked genes to determine which of the current taxonomic treatments is better supported by molecular species delimitation methods. The results of a haplotype web analysis, Bayesian species delimitation under a multispecies coalescent model, and phylogenetic analyses on concatenated alignments support a splitting approach that distinguishes six taxa: Diderma alpinum, D. europaeum, D. kamchaticum, D. meyerae, D. microcarpum and D. niveum. The first two approaches also support the separation of Diderma alpinum into two species with allopatric distribution. An extended dataset of 800 specimens (mainly from Europe) that were barcoded with 18S rDNA revealed only barcode variants similar to those in the species characterized by the first data set, and showed an uneven distribution of these species in the Northern Hemisphere: Diderma microcarpum and D. alpinum were the only species found in all seven intensively sampled mountain regions. Partial 18S rDNA sequences serving as DNA barcodes provided clear signatures that allowed for unambiguous identification of the nivicolous Diderma spp., including two putative species in D. alpinum.
期刊介绍:
Protist is the international forum for reporting substantial and novel findings in any area of research on protists. The criteria for acceptance of manuscripts are scientific excellence, significance, and interest for a broad readership. Suitable subject areas include: molecular, cell and developmental biology, biochemistry, systematics and phylogeny, and ecology of protists. Both autotrophic and heterotrophic protists as well as parasites are covered. The journal publishes original papers, short historical perspectives and includes a news and views section.