Plant Direct最新文献_第2页

Reproductive Cold Stress in Contrasting Sorghum Genotypes: Is Pollen Fertility Really the Crucial Trait? 对比高粱基因型的生殖冷胁迫：花粉育性真的是关键性状吗？

IF 2.3 3区生物学

Plant Direct Pub Date : 2025-05-04 eCollection Date: 2025-05-01 DOI: 10.1002/pld3.70065

Luisa Neitzert, Natalja Kravcov, Benjamin Wittkop, Rod Snowdon, Steffen Windpassinger

{"title":"Reproductive Cold Stress in Contrasting Sorghum Genotypes: Is Pollen Fertility Really the Crucial Trait?","authors":"Luisa Neitzert, Natalja Kravcov, Benjamin Wittkop, Rod Snowdon, Steffen Windpassinger","doi":"10.1002/pld3.70065","DOIUrl":"https://doi.org/10.1002/pld3.70065","url":null,"abstract":"The influence of cold stress during the reproductive phase can lead to substantial yield losses in sorghum. In order to extend cultivation into temperate regions, a better understanding of reproductive cold tolerance is essential for breeding progress. To further elucidate the mechanisms responsible for cold tolerance, a cold-tolerant and a cold-sensitive parental line, along with their reciprocal F1 hybrids, were subjected to cold stress at various stages of reproductive development, with a focus on pollen fertility and receptivity of female floral organs. For this purpose, pollen measurements were conducted using impedance flow cytometry, and the panicle harvest index was determined post-maturation. While existing literature primarily attributes reduced pollen fertility as the cause of decreased seed set, this study provides evidence that female floral organs might be more affected than previously assumed. We found that the onset of generative tissue formation until BBCH39 (flag leaf visible) is the most cold-sensitive developmental stage and that there is no predominance of maternal or paternal effects associated with the inheritance of cold tolerance in reciprocal F1 hybrids. These findings offer valuable insights for the development of cold-tolerant sorghum varieties to enable cultivation in colder regions and enhance yield stability in temperate climates. Further studies should aim at validating and expanding these findings from the limited number of representative genotypes analyzed in the present manuscript to global sorghum diversity.","PeriodicalId":20230,"journal":{"name":"Plant Direct","volume":"9 5","pages":"e70065"},"PeriodicalIF":2.3,"publicationDate":"2025-05-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12050216/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144017153","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

UV-B Irradiation Does Not Promote Flowering in Arabidopsis Despite Increased FT Expression. UV-B照射不促进拟南芥开花，尽管增加了FT表达。

IF 2.3 3区生物学

Plant Direct Pub Date : 2025-05-04 eCollection Date: 2025-05-01 DOI: 10.1002/pld3.70073

Ami Takahashi, Yuki Takahashi, Jun Hidema, Mika Teranishi

{"title":"UV-B Irradiation Does Not Promote Flowering in Arabidopsis Despite Increased FT Expression.","authors":"Ami Takahashi, Yuki Takahashi, Jun Hidema, Mika Teranishi","doi":"10.1002/pld3.70073","DOIUrl":"https://doi.org/10.1002/pld3.70073","url":null,"abstract":"Various environmental factors control the plant flowering time. However, the specific effects of ultraviolet (UV)-B radiation on flowering remain unclear. UV-B irradiation delays flowering in Arabidopsis during short-day (SD) photoperiods. In contrast, UV-B irradiation causes a variety of flowering phenotypes during long-day (LD) photoperiods, including unchanged, delayed, and accelerated flowering. We hypothesized that variations in UV-B intensity are responsible for the phenotypic changes under LD photoperiods. Therefore, in this study, Arabidopsis plants were exposed to two distinct UV-B intensities: a low UV-B intensity that activates UVR8-dependent pathways and high UV-B intensity that activates both UVR8-dependent and -independent pathways. Under LD photoperiods, neither the wild-type (WT) nor the uvr8 mutant showed any change in flowering time at either UV-B irradiation intensity. Under the SD photoperiod, UV-B irradiation delayed WT flowering. The expression of flowering locus T (FT) increased after UV-B irradiation under the LD photoperiod in a UVR8-dependent manner. However, despite the increased expression of FT, expression levels of floral meristem identity genes in shoot apical meristem (SAM) were not increased by UV-B irradiation. As UV-B irradiation is known to suppress flowering in SAM in a UVR8-dependent manner, increase in FT expression induced by UV-B irradiation possibly antagonized the suppressive effect of UV-B irradiation. Overall, these results suggest that flowering phenotypes do not change with UV-B intensity but with the balance between the inhibitory and promotive effects of UVR8 activated by UV-B irradiation.","PeriodicalId":20230,"journal":{"name":"Plant Direct","volume":"9 5","pages":"e70073"},"PeriodicalIF":2.3,"publicationDate":"2025-05-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12050359/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143994789","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

A Method to Visualize Cell Proliferation of Arabidopsis thaliana: A Case Study of the Root Apical Meristem. 拟南芥根尖分生组织细胞增殖可视化方法研究。

IF 2.3 3区生物学

Plant Direct Pub Date : 2025-04-28 eCollection Date: 2025-04-01 DOI: 10.1002/pld3.70060

J Irepan Reyes-Olalde, Miguel Tapia-Rodríguez, Vadim Pérez-Koldenkova, Gastón Contreras-Jiménez, Paul Hernández-Herrera, Gabriel Corkidi, Arturo J Arciniega-González, Maria De La Paz-Sánchez, Berenice García-Ponce, Adriana Garay-Arroyo, Elena R Álvarez-Buylla

{"title":"A Method to Visualize Cell Proliferation of Arabidopsis thaliana: A Case Study of the Root Apical Meristem.","authors":"J Irepan Reyes-Olalde, Miguel Tapia-Rodríguez, Vadim Pérez-Koldenkova, Gastón Contreras-Jiménez, Paul Hernández-Herrera, Gabriel Corkidi, Arturo J Arciniega-González, Maria De La Paz-Sánchez, Berenice García-Ponce, Adriana Garay-Arroyo, Elena R Álvarez-Buylla","doi":"10.1002/pld3.70060","DOIUrl":"https://doi.org/10.1002/pld3.70060","url":null,"abstract":"Plant growth and development rely on a delicate balance between cell proliferation and cell differentiation. The root apical meristem (RAM) of Arabidopsis thaliana is an excellent model to study the cell cycle due to the coordinated relationship between nucleus shape and cell size at each stage, allowing for precise estimation of the cell cycle duration. In this study, we present a method for high-resolution visualization of RAM cells. This is the first protocol that allows for simultaneous high-resolution imaging of cellular and nuclear stains, being compatible with DNA replication markers such as EdU, including fluorescent proteins (H2B::YFP), SYTOX DNA stains, and the cell wall stain SR2200. This protocol includes a clarification procedure that enables the acquisition of high-resolution 3D images, suitable for detailed subsequent analysis.","PeriodicalId":20230,"journal":{"name":"Plant Direct","volume":"9 4","pages":"e70060"},"PeriodicalIF":2.3,"publicationDate":"2025-04-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12037192/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144017320","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

MDF Regulates a Network of Auxin-Dependent and Auxin-Independent Pathways of Adventitious Root Regeneration in Arabidopsis. MDF调控拟南芥生长素依赖性和非生长素依赖性不定根再生通路网络。

IF 2.3 3区生物学

Plant Direct Pub Date : 2025-04-23 eCollection Date: 2025-04-01 DOI: 10.1002/pld3.70050

Fahad Aldowigh, Rodrigo Matus, Julien Agneessens, Haozhan Gao, Wenbin Wei, Jennifer Topping, Keith Lindsey

{"title":"MDF Regulates a Network of Auxin-Dependent and Auxin-Independent Pathways of Adventitious Root Regeneration in Arabidopsis.","authors":"Fahad Aldowigh, Rodrigo Matus, Julien Agneessens, Haozhan Gao, Wenbin Wei, Jennifer Topping, Keith Lindsey","doi":"10.1002/pld3.70050","DOIUrl":"https://doi.org/10.1002/pld3.70050","url":null,"abstract":"Plants exhibit strong plasticity in growth and development, seen clearly in lateral and adventitious root development from differentiated tissues in response to environmental stresses. Previous studies have demonstrated the role of both auxin-dependent and auxin-independent signaling pathways in regulating the de novo formation of adventitious roots (ARs) from differentiated tissues, such as leaf petiole in Arabidopsis. One important question is how the auxin-dependent and auxin-independent pathways are coordinated. To investigate this question, we used a combined approach of inducible gene expression, mutant, and signaling reporter gene analysis during AR regeneration in the Arabidopsis petiole to understand regulatory relationships. Auxin signaling components AXR1 and AXR3 are each required for both AR and subsequent lateral root (LR) initiation, as is the ethylene signaling repressor POLARIS, but not EIN2. The PIN trafficking SNARE protein VAMP714 is required for LR rather than AR formation, through effects on auxin-induced gene expression. We identify the RNA splicing regulator MDF and the transcription factor RAP2.7 as new positive regulators of both the auxin-independent and auxin-dependent pathways, and show that MDF regulates RAP2.7, WOX5, and NAC1 while RAP2.7 regulates WOX5 but not NAC1 or YUC1. NAC1 is required for de novo root formation in a pathway independent of YUC1, WOX5, or RAP2.7. We propose a model in which MDF represents a point of molecular crosstalk between auxin-dependent and auxin-independent regeneration processes.","PeriodicalId":20230,"journal":{"name":"Plant Direct","volume":"9 4","pages":"e70050"},"PeriodicalIF":2.3,"publicationDate":"2025-04-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12018534/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144004648","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

UnigeneFinder: An Automated Pipeline for Gene Calling From Transcriptome Assemblies Without a Reference Genome. UnigeneFinder：一个自动管道，从转录组组装的基因调用没有参考基因组。

IF 2.3 3区生物学

Plant Direct Pub Date : 2025-04-22 eCollection Date: 2025-04-01 DOI: 10.1002/pld3.70056

Bo Xue, Karine Prado, Seung Yon Rhee, Matt Stata

{"title":"UnigeneFinder: An Automated Pipeline for Gene Calling From Transcriptome Assemblies Without a Reference Genome.","authors":"Bo Xue, Karine Prado, Seung Yon Rhee, Matt Stata","doi":"10.1002/pld3.70056","DOIUrl":"https://doi.org/10.1002/pld3.70056","url":null,"abstract":"For most species, transcriptome data are much more readily available than genome data. Without a reference genome, gene calling is cumbersome and inaccurate because of the high degree of redundancy in de novo transcriptome assemblies. To simplify and increase the accuracy of de novo transcriptome assembly in the absence of a reference genome, we developed UnigeneFinder. Combining several clustering methods, UnigeneFinder substantially reduces the redundancy typical of raw transcriptome assemblies. This pipeline offers an effective solution to the problem of inflated transcript numbers, achieving a closer representation of the actual underlying genome. UnigeneFinder performs comparably or better, compared with existing tools, on plant species with varying genome complexities. UnigeneFinder is the only available transcriptome redundancy solution that fully automates the generation of primary transcript, coding region, and protein sequences, analogous to those available for high-quality reference genomes. These features, coupled with the pipeline's cross-platform implementation, focus on automation, and an accessible, user-friendly interface, make UnigeneFinder a useful tool for many downstream sequence-based analyses in nonmodel organisms lacking a reference genome, including differential gene expression analysis, accurate ortholog identification, functional enrichments, and evolutionary analyses. UnigeneFinder also runs efficiently both on high-performance computing (HPC) systems and personal computers, further reducing barriers to use.","PeriodicalId":20230,"journal":{"name":"Plant Direct","volume":"9 4","pages":"e70056"},"PeriodicalIF":2.3,"publicationDate":"2025-04-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12012387/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144027380","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

A Periodic 4-h Extension of the Dark Period Did Not Cause Long-Term Changes in the Circadian Regulation of Photosynthesis and Sugar Levels in Lettuces. 周期性延长4小时的黑暗期不会导致生菜光合作用和糖水平的昼夜调节发生长期变化。

IF 2.3 3区生物学

Plant Direct Pub Date : 2025-04-21 eCollection Date: 2025-04-01 DOI: 10.1002/pld3.70062

Cédric Dresch, Véronique Vidal, Séverine Suchail, Huguette Sallanon, Florence Charles, Vincent Truffault

{"title":"A Periodic 4-h Extension of the Dark Period Did Not Cause Long-Term Changes in the Circadian Regulation of Photosynthesis and Sugar Levels in Lettuces.","authors":"Cédric Dresch, Véronique Vidal, Séverine Suchail, Huguette Sallanon, Florence Charles, Vincent Truffault","doi":"10.1002/pld3.70062","DOIUrl":"https://doi.org/10.1002/pld3.70062","url":null,"abstract":"The photoperiod in controlled environment agriculture can be adjusted to minimize electricity consumption, even if it differs from the plant's circadian rhythm. Daily modifications of the photoperiod disrupt the plant's circadian resonance state, resulting in altered growth and yield. However, the effects of periodic, rather than daily, photoperiod adjustments remain less understood. This study aims to investigate the effects of a 4-h extension of the dark period every 3 days on the circadian regulation of photosynthetic activity and sugar content, as well as on lettuce yield. Control lettuces were grown under a 16/8 photoperiod, while EPD lettuces (\"Exceptionally long Period of Darkness\") were grown under a repeated 16/12-16/8-16/8 photoperiod pattern from the beginning to the end of cultivation. The experiment was repeated twice, and the 4-h extension induced a loss of photosynthetic activity of 7% and 11% during the following lighting period in the first and second experiments, respectively. The yields were not affected. The stomatal conductance followed the circadian rhythm of lettuce rather than directly responding to photoperiod modifications. Furthermore, no long-term changes in starch and sucrose content were observed. Taken together, these results show that extending the dark period by 4 h every 3 days did not cause long-term disruption of the circadian regulation of photosynthesis and sugar levels in lettuce. These results provide new insights for optimizing light management in controlled environment agriculture, suggesting that the management of dark periods is crucial for maintaining yields and reducing energy consumption.","PeriodicalId":20230,"journal":{"name":"Plant Direct","volume":"9 4","pages":"e70062"},"PeriodicalIF":2.3,"publicationDate":"2025-04-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12011635/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144008833","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Genome-Wide Association Analyses Identify Hydrogen Peroxide-Responsive Loci in Wheat Diversity. 小麦多样性中过氧化氢反应位点的全基因组关联分析

IF 2.3 3区生物学

Plant Direct Pub Date : 2025-04-17 eCollection Date: 2025-04-01 DOI: 10.1002/pld3.70067

Mohammad Kamruzzaman, Md Nurealam Siddiqui, Samira Rustamova, Agim Ballvora, Jens Léon, Ali Ahmad Naz

{"title":"Genome-Wide Association Analyses Identify Hydrogen Peroxide-Responsive Loci in Wheat Diversity.","authors":"Mohammad Kamruzzaman, Md Nurealam Siddiqui, Samira Rustamova, Agim Ballvora, Jens Léon, Ali Ahmad Naz","doi":"10.1002/pld3.70067","DOIUrl":"https://doi.org/10.1002/pld3.70067","url":null,"abstract":"Hydrogen peroxide (H2O2) is a signaling molecule that plays a crucial role in plant growth and development against different abiotic stresses. Identifying genetic factors associated with H2O2 regulation and homeostasis can provide valuable insights for improving stress tolerance. Here, we explored genetic diversity of root and shoot traits mediated by H2O2 using a global diversity panel of 150 bread wheat cultivars. The H2O2 treatment significantly reduced root and shoot growth. We calculated relative values and stress tolerance index (STI) of root and shoot traits and performed genome-wide association studies (GWAS). This led to identification of 108 marker-trait associations including the topmost associations on chromosomes 3B, 2A, 5A, 3B, 5D, 5A, 6B, 4B, and 3B for relative root length, STI root length, relative shoot length, STI shoot length, relative root fresh weight, relative shoot fresh weight, STI shoot fresh weight, and relative and STI root-shoot ratio, respectively. Linkage disequilibrium analysis revealed that major alleles of significant markers were linked with high relative values and STIs for all traits except for relative root length and relative root-shoot ratio. The selected candidate genes were involved mostly in metal ion binding, transmembrane transport, oxidation-reduction process, protein phosphorylation, DNA, and ADP binding processes. These findings provide a fundamental basis for functional analysis of putative candidate genes linked to H2O2-mediated root-shoot growth of wheat. The result will also help to construct genetic map for H2O2-mediated root-shoot growth variation.","PeriodicalId":20230,"journal":{"name":"Plant Direct","volume":"9 4","pages":"e70067"},"PeriodicalIF":2.3,"publicationDate":"2025-04-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12004125/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144050482","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Effect of Low Red-to-Far-Red Light on Stem Elongation and Pith Cell Development in Dicots. 低红光到远红光对薯蓣茎伸长和髓细胞发育的影响。

IF 2.3 3区生物学

Plant Direct Pub Date : 2025-04-15 eCollection Date: 2025-04-01 DOI: 10.1002/pld3.70072

Linge Li, Yorrit van de Kaa, Lotte van der Krabben, Ronald Pierik, Kaisa Kajala

{"title":"Effect of Low Red-to-Far-Red Light on Stem Elongation and Pith Cell Development in Dicots.","authors":"Linge Li, Yorrit van de Kaa, Lotte van der Krabben, Ronald Pierik, Kaisa Kajala","doi":"10.1002/pld3.70072","DOIUrl":"https://doi.org/10.1002/pld3.70072","url":null,"abstract":"In dense canopies, light becomes a limiting factor for plant growth. Many plants respond to neighbor cues by growing taller to improve light capture, a phenomenon known as the shade avoidance syndrome (SAS). The major neighbor detection is via enrichment of far-red (FR) light that leads to a low red:far-red light ratio (R:FR), suppressing phytochrome activity. In tomato, low R:FR induces elongation of the internodes, but study into the role of different cell types in this response has remained limited. We characterized changes in cellular anatomy of the tomato internode in response to low R:FR and its accompanying changes in gene expression. We observed changes to the pith traits, including increases in pith layer number, pith cell diameter, and longitudinal cell length. We profiled the transcriptome in the entire internodes and in the hand-dissected pith in the central cylinder of the internode in response to low R:FR treatment and identified transcription factors (TFs) of interest that were upregulated in the central cylinder, mostly GATA, TCP, and bZIPs. We then characterized FR responses in eight dicotyledonous species. Significant pith elongation was observed in species that exhibited a strong internode elongation response. The FR-responsive expression of homologs of target GATA, TCP, and bZIP TFs in the central cylinder was conserved within the Solanaceae family. Overall, we discovered central cylinder gene expression patterns in SAS that are distinct from those of the entire internode, suggesting that some responses are unique and likely specific to vascular cell types such as pith. These patterns were conserved with close relatives of tomato but not in other dicot families we sampled, indicating that different molecular mechanisms drive FR responses in different dicots.","PeriodicalId":20230,"journal":{"name":"Plant Direct","volume":"9 4","pages":"e70072"},"PeriodicalIF":2.3,"publicationDate":"2025-04-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11999800/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144021700","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Sensitivity to Photoperiod Is a Complex Trait in Camelina sativa. 对光周期的敏感性是亚麻荠的一个复杂性状。

IF 2.3 3区生物学

Plant Direct Pub Date : 2025-04-15 eCollection Date: 2025-04-01 DOI: 10.1002/pld3.70071

Bryan A Ramirez-Corona, Erin Seagren, Carissa Sherman, Takato Imaizumi, Christine Queitsch, Josh Cuperus

{"title":"Sensitivity to Photoperiod Is a Complex Trait in Camelina sativa.","authors":"Bryan A Ramirez-Corona, Erin Seagren, Carissa Sherman, Takato Imaizumi, Christine Queitsch, Josh Cuperus","doi":"10.1002/pld3.70071","DOIUrl":"https://doi.org/10.1002/pld3.70071","url":null,"abstract":"Day neutrality, or insensitivity to photoperiod (day length), is an important domestication trait in many crop species. Although the oilseed crop C. sativa has been cultivated since the Neolithic era, day-neutral accessions have yet to be described. We sought to leverage genetic diversity in existing germplasms to identify C. sativa accessions with low photoperiod sensitivity for future engineering of this trait. To do so, we quantified variation in hypocotyl length across 161 C. sativa accessions of 4-day-old seedlings grown in long-day and short-day conditions as a high-throughput approximation of variation in the photoperiod response. Soil-grown adult plants from selected accessions also showed variation in the response to day length in several traits; however, the responses in seedling and adult traits were not correlated, suggesting complex mechanistic underpinnings. Although RNA-seq experiments of the reference accession Licalla identified several differentially regulated Arabidopsis syntelogs involved in photoperiod response and development, including COL2, FT, LHY, and WOX4, expression of these genes in the accessions did not correlate with differences in their photoperiod sensitivity. Taken together, we show that all tested accessions show some degree of photoperiod response and that this trait is likely complex, involving several and separable seedling and adult traits.","PeriodicalId":20230,"journal":{"name":"Plant Direct","volume":"9 4","pages":"e70071"},"PeriodicalIF":2.3,"publicationDate":"2025-04-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11999801/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144027982","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

The Shock of Shatter: Understanding Silique and Silicle Dehiscence for Improving Oilseed Crops in Brassicaceae. 粉碎的冲击：了解油菜科油料作物的硅质和硅质开裂。

IF 2.3 3区生物学

Plant Direct Pub Date : 2025-04-13 eCollection Date: 2025-04-01 DOI: 10.1002/pld3.70058

Justin B Nichol, Shakshi A Dutt, Marcus A Samuel

{"title":"The Shock of Shatter: Understanding Silique and Silicle Dehiscence for Improving Oilseed Crops in Brassicaceae.","authors":"Justin B Nichol, Shakshi A Dutt, Marcus A Samuel","doi":"10.1002/pld3.70058","DOIUrl":"https://doi.org/10.1002/pld3.70058","url":null,"abstract":"Silique dehiscence, despite being an essential physiological process for seed dispersal for dehiscent fruits, is disadvantageous for the agricultural industry. While crops have been selected against the expression of natural, spontaneous shattering to protect the seeds for harvest, fruit dehiscence in the field can be promoted through abiotic factors such as wind, drought, and hail that can be detrimental in reducing crop yield and profitability. In crops like canola, pennycress, and Camelina, this impact could be as high as 50%, creating economic losses for both the industry and the economy. Mitigating the effects of fruit dehiscence is crucial to prevent seed loss, economic loss, and the persistence of volunteer plants, which interfere with crop rotation and require increased weed control. Developing agronomic traits through genetic manipulation to enhance the strength of the fruiting body can prevent seed dispersal mechanisms from occurring and boost yield efficiency and preservation. Current research into this area has created mutant plants with indehiscent fruits by reducing allele function that determines the identity of the various anatomical layers of the fruit. Future genetic approaches may focus on strengthening siliques by enhancing secondary cell walls through either increased lignification or reducing cell wall-degrading enzymes to achieve shatter tolerance. This review focuses on improving our knowledge within members of the Brassicaceae family to create a better understanding of silique/silicle dehiscence for researchers to establish a groundwork for broader applications across diverse crops. This knowledge will directly lead to improved agricultural productivity and ensure a stable food supply, addressing global challenges the world is facing.","PeriodicalId":20230,"journal":{"name":"Plant Direct","volume":"9 4","pages":"e70058"},"PeriodicalIF":2.3,"publicationDate":"2025-04-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11994477/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144013896","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0