{"title":"Crop biofortification for global food security: advances in genetic engineering and biotechnological approaches.","authors":"Lamiaa M Mahmoud, Nabil Killiny","doi":"10.1007/s11103-026-01706-w","DOIUrl":"10.1007/s11103-026-01706-w","url":null,"abstract":"<p><p>Micronutrient deficiencies, affecting over two billion people worldwide, pose significant health challenges. Recent advancements in biofortification and genetic engineering have shown considerable promise in enhancing the nutritional content of staple crops, thereby improving global nutrition and health outcomes. Biofortification, the process of increasing the nutrient content of crops through conventional breeding techniques and genetic engineering, has expanded the possibilities by enabling precise modifications to enhance nutrient profiles. These technologies have led to crops with increased levels of pigments, iron, zinc, vitamin A, and other critical micronutrients. Despite the potential benefits, several challenges hinder the widespread adoption of biofortified and genetically engineered crops. Regulatory hurdles, consumer acceptance, and socioeconomic factors continue to be significant barriers. Additionally, the long-term environmental impacts and ethical considerations of genetic modifications continue to spark debate. Continued research and collaboration among scientists, policymakers, and stakeholders are essential to overcome these challenges. This review reports the current state of biofortification through genetic engineering, while also addressing the barriers to its adoption. These plant-based solutions can play an essential role in advancing global food security and improving public health.</p>","PeriodicalId":20064,"journal":{"name":"Plant Molecular Biology","volume":"116 3","pages":""},"PeriodicalIF":3.7,"publicationDate":"2026-04-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147778359","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Genome-wide identification and functional analysis of long noncoding RNAs responsive to abscisic acid, drought, and methyl jasmonate in Arabidopsis thaliana.","authors":"Mian Numan, Zonghui Zhu, Guanglin Li","doi":"10.1007/s11103-026-01709-7","DOIUrl":"10.1007/s11103-026-01709-7","url":null,"abstract":"<p><p>Long non-coding RNAs (lncRNAs) are pivotal regulators of plant hormone and stress responses, however the lncRNAs that coordinately integrate abscisic acid (ABA), drought, and jasmonate signaling in Arabidopsis thaliana remain poorly understood. A combined bioinformatic and experimental approach was employed to identify stress-responsive lncRNAs and assess their regulatory functions. A total of 447 RNA-seq datasets from ABA, drought, and methyl jasmonate (MeJA) treated samples were analyzed to predict treatment specific lncRNAs, and a core set of multi-stress-responsive lncRNAs (mslncRNAs) was identified by intersecting lncRNA loci across conditions. This analysis identified 4176, 4886, and 4190 lncRNAs under ABA, MeJA, and drought, respectively, 54.33% of which were novel. Differential expression analysis yielded 2318, 2603, and 1788 stress-responsive lncRNAs, and a stringent filtering pipeline defined 287 high-confidence mslncRNAs. Functional enrichment of cis-neighboring genes implicated mslncRNAs in pathogen defense, phytohormone signaling, and abiotic stress responses. Competitive endogenous RNA (ceRNA) network analysis identified 232 endogenous target mimics (eTMs) interacting with 118 miRNAs whose targets are enriched in hormone signaling, stress responses, and core metabolic pathways, indicating that mslncRNAs act as molecular nodes within stress-responsive transcriptional networks. For the experimental validation firstly the expression of the candidate mslncRNA-84 and mslncRNA-189 was validated by RT-qPCR, and their induction by ABA, drought, and MeJA was consistent with in silico predictions. To further characterize their functions, T-DNA insertion lines disrupting these transcripts were subjected to ABA-sensitive germination and jasmonate-dependent growth inhibition assays, biotic stress assays with Pseudomonas syringae pv. tomato DC3000 (including DAB and trypan blue staining and colony-forming unit quantification), and drought survival assays. Collectively, these genome-wide and experimental data indicate that mslncRNAs represent candidate ceRNA-associated regulatory nodes that may contribute to crosstalk among ABA, drought, and MeJA signaling pathways, shaping stress-responsive transcriptional programs.</p>","PeriodicalId":20064,"journal":{"name":"Plant Molecular Biology","volume":"116 3","pages":""},"PeriodicalIF":3.7,"publicationDate":"2026-04-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147778376","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Zaibin Wang, Qingting Liu, Yan Zhang, Xueting Han, Tao Wu, Qing Zhou, Zhenghe Luo, Xiaojuan Lin
{"title":"Quantitative research from the perspective of mathematical and physical crop science: a review of phenotyping, mechanics, and modeling.","authors":"Zaibin Wang, Qingting Liu, Yan Zhang, Xueting Han, Tao Wu, Qing Zhou, Zhenghe Luo, Xiaojuan Lin","doi":"10.1007/s11103-026-01710-0","DOIUrl":"10.1007/s11103-026-01710-0","url":null,"abstract":"<p><p>Addressing global grand challenges, including food security, climate change, and resource scarcity, requires transcending the limitations of traditional crop science research. Traditional approaches often suffer from low-throughput, destructive nature, and qualitatively macroscopic analyses, hindering the in-depth exploration and precise manipulation of crop growth mechanisms necessary for modern agriculture. This review systematically synthesizes recent advancements and pinpoints critical bottlenecks in key areas of modern crop science research: high-throughput phenotyping, multiscale mechanics of crops, and numerical modeling of crop-environment interactions. Based on this synthesis, we propose and articulate a conceptual framework for the novel interdisciplinary field: “mathematical and physical crop science.” The framework establishes an integrated paradigm of “data-driven, mechanism-based, and system-predictive” research, structured as follows: (1) High-throughput phenotyping, coupled with artificial intelligence and machine learning-driven analysis, quantifies dynamic phenotypic traits emerging from genotype-by-environment interactions. (2) Multiscale mechanics of crops resolves the physical constraints governing crop structure and function across different scales. (3) Numerical modeling of crop-environment interactions simulates the dynamic interactions between crop physiological processes and environmental factors. The overarching goal is to integrate these historically disparate research domains, providing a unified theoretical foundation for the systematic understanding of crop physiological and developmental processes and informing sustainable agricultural practices.</p>","PeriodicalId":20064,"journal":{"name":"Plant Molecular Biology","volume":"116 3","pages":""},"PeriodicalIF":3.7,"publicationDate":"2026-04-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147778446","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Pan-transcriptome analysis of diverse chickpea accessions reveals specific expression patterns and genetic variations associated with agronomic traits.","authors":"Mohan Singh Rajkumar, Ayushman Kumar Banerjee, Juhi Bansal, Mukesh Jain, Rohini Garg","doi":"10.1007/s11103-026-01707-9","DOIUrl":"10.1007/s11103-026-01707-9","url":null,"abstract":"<p><p>Chickpea (Cicer arietinum L.) is one of the important legumes providing a rich source of dietary intake. Although numerous genomics studies have been performed in chickpea, a comprehensive pan-transcriptome analysis across diverse chickpea accessions has not been conducted. In this study, we analyzed the transcriptomes of 32 chickpea accessions, comprising 21 desi-type, 9 kabuli-type, and 2 wild accessions, employing reference-based RNA-seq approach. We identified genes expressed in an accession-specific manner as well as the genes preferentially expressed in desi, kabuli, and wild chickpeas. The analysis of single-nucleotide polymorphisms (SNPs) across 32 accessions revealed phylogenetic relationships distinguishing the three chickpea types. The SNPs located within the coding regions linked to seed size/weight and drought stress response traits were identified. Further, we highlighted candidate genes for these traits based on their colocalization with quantitative trait loci and presence of non-synonymous SNPs with potential impact on the stability of the encoded proteins. Overall, this study provides a valuable resource for the pan-transcriptome, gene expression atlas, and transcriptome-wide SNP map to facilitate large-scale functional characterization and genotyping applications in chickpea.</p>","PeriodicalId":20064,"journal":{"name":"Plant Molecular Biology","volume":"116 2","pages":""},"PeriodicalIF":3.7,"publicationDate":"2026-03-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147531209","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Natural variation uncouples HSFA2 induction from volatile-induced thermotolerance in Arabidopsis thaliana.","authors":"B R Barbaruah, S Feng, S Chen, H Ito","doi":"10.1007/s11103-026-01704-y","DOIUrl":"10.1007/s11103-026-01704-y","url":null,"abstract":"<p><p>Volatile organic compounds can prime plants for improved thermotolerance, but how volatile perception is coupled with heat-protective transcriptional programs across natural variation remains unclear. We compared six Arabidopsis thaliana accessions for early induction of the thermomemory regulator HSFA2 following 30 min of priming with mild heat or seven reactive short-chain volatiles and assessed survival after a priming–recovery–lethal heat regime. Several reactive GLVs enhanced survival across the panel; the magnitude of both survival and early HSFA2 induction was accession-dependent. Across accessions, priming outputs were decoupled from canonical thermomemory markers: Cvi-0 exhibited uniformly weak HSFA2 induction yet retained high survival after T2H priming, whereas C24 showed low HSFA2 responsiveness to mild heat but pronounced volatile-driven HSFA2 induction. Early induction of class A1 heat shock factor genes (HSFA1 paralogs) and the thermotolerance effector HSP101 also varied among accessions, further supporting the uncoupling of survival outcomes from core heat-shock regulators. We then contrasted Col-0 and Cvi-0 using transcriptome profiling under control and T2H conditions. Col-0 strengthened a canonical heat-response module during T2H exposure, whereas Cvi-0 showed weaker induction of HSFA2, HSFA7, HSP101, and multiple small heat shock protein genes, indicating reduced T2H responsiveness in Cvi-0 despite strong priming. Instead, Cvi-0 activated defense- and detoxification-associated programs and specialized metabolism, highlighting candidate modules that include ESP, ALD1, PR5, GSTU10, and CYP71B15. Together, these results demonstrate that volatile-primed thermotolerance can be achieved without a strongly HSFA2-dominated transcriptional program, revealing alternative regulatory routes that may be leveraged to enhance heat resilience.</p>","PeriodicalId":20064,"journal":{"name":"Plant Molecular Biology","volume":"116 2","pages":""},"PeriodicalIF":3.7,"publicationDate":"2026-03-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147521647","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Kethmi Nirmani Jayawardhane, Tharangani K Somarathna, Victor P Manoli, Sheau-Fang Hwang, Stephen E Strelkov, Stacy D Singer, Guanqun Chen
{"title":"Elucidating putative novel functions of the AINTEGUMENTA-LIKE 7 transcription factor in clubroot resistance in Arabidopsis.","authors":"Kethmi Nirmani Jayawardhane, Tharangani K Somarathna, Victor P Manoli, Sheau-Fang Hwang, Stephen E Strelkov, Stacy D Singer, Guanqun Chen","doi":"10.1007/s11103-026-01698-7","DOIUrl":"10.1007/s11103-026-01698-7","url":null,"abstract":"<p><p>Clubroot caused by Plasmodiophora brassicae is a devastating soilborne disease of the Brassicaceae worldwide. Disease management often relies on disease resistant cultivars, but their overuse has led to the break down of resistance. As such, it is important to elucidate novel gene targets for clubroot tolerance. AINTEGUMENTA-LIKE 7 (AIL7), a transcription factor in the AP2/ERF family, has been observed to influence the expression of genes involved in biotic stress response when overexpressed in Arabidopsis seeds in our previous study. Here we evaluated the resistance of Arabidopsis lines that constitutively overexpressed AIL7, as well as an ail7 T-DNA mutant, to P. brassicae, and found that both mutant and overexpression lines displayed reduced clubroot symptoms and pathogen spore load in infected tissues. Targeted gene expression analysis revealed significant alterations in the transcript levels of genes linked to pathogen response, along with notable differences in those associated with salicylic acid (SA) and jasmonic acid (JA) defense pathways. Interestingly, the SA- and JA-related genes had a tendency for up-regulation in AIL7 overexpression and mutant lines in the absence, rather than presence, of P. brassicae, and phytohormone analyses confirmed these results. These findings indicate that phytohormone-mediated defense pathways are constitutively activated in Arabidopsis lines in which AIL7 is either overexpressed or knocked out, which likely contributes to a reduction in disease symptoms. Taken together, these findings suggest that AIL7 could be a potential target for improving plant responses to clubroot. However, more extensive evaluation across a broader range of inoculum levels and pathotypes will be necessary to assess its relevance for breeding resistant cultivars.</p>","PeriodicalId":20064,"journal":{"name":"Plant Molecular Biology","volume":"116 2","pages":""},"PeriodicalIF":3.7,"publicationDate":"2026-03-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147514267","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Identification of the methionine sulfoxide reductase (MSR) gene family in four Triticum species and functional analysis of TaMSRB5 involved in copper stress tolerance in Arabidopsis thaliana.","authors":"Heng Chen, Luzhen Wang, Kexin Zhao, Shuai Yan, Yifei Chen, Lei Guo, Yinying Wu, Renmei Tian, Danping Li, Wenjia Zhang, Jianjun Liu, Haosheng Li, Xiaoyan Duan, Xiukun Liu, Yulong Song, Donghong Min, Xinyou Cao, Xin Gao","doi":"10.1007/s11103-026-01703-z","DOIUrl":"10.1007/s11103-026-01703-z","url":null,"abstract":"<p><p>Methine sulfoxide reductase (MSR) plays a crucial role in protecting plants from oxidative damages. However, their involvement in copper (Cu) detoxification remains largely uncharacterized. In this study, we identified 17 MSR genes in wheat (Triticum aestivum), 12 MSR genes in Triticum dicoccoides (Td), 6 in Triticum urartu (Tu), and 5 in Aegilops tauschii (Aet). Strong collinearity and conservation were found among orthologs. Three constitutively expressed homoeologs of TaMSRB5 were significantly upregulated in leaves and downregulated in roots of wheat seedlings when exposed to excessive Cu. Overexpression of TaMSRB5 in Arabidopsis significantly enhanced Cu tolerance as evidenced by increased fresh weight and root length in transgenic plants, compared to wild-type (WT, Col-0). Under Cu toxicity, Arabidopsis overexpression lines accumulated similar levels of Cu in their leaves and roots compared with WT. However, they exhibited elevated levels of oxidized glutathione (GSSG), total glutathione (T-GSH), along with Glutathione S-transferase (GST), superoxide dismutase (SOD) and catalase (CAT) activities. Simultaneously, they showed reduced levels of reactive oxygen species (ROS) and malondialdehyde (MDA), and a lower GSH/ GSSG ratio, indicating enhanced ROS scavenging ability. Consistent with the moderation of oxidative stress, comparative transcriptome analysis revealed that four GST genes were upregulated in transgenic Arabidopsis plants under Cu stress, suggesting the potential relationship between these genes with TaMSRB5 in Cu detoxification. The findings demonstrate the pivotal role of TaMSRB5 in enhancing Cu tolerance in Arabidopsis and provide novel insights into the molecular mechanisms underlying Cu detoxification.</p>","PeriodicalId":20064,"journal":{"name":"Plant Molecular Biology","volume":"116 2","pages":""},"PeriodicalIF":3.7,"publicationDate":"2026-03-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147514328","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Anik Majumdar, Yeluru Mohan Babu, Firoz Mondal, Mehulee Sarkar, Prantik Mazumder, Priyanka Pradhan, Ravinder Kumar, Sota Koeda, Anirban Roy
{"title":"The prospects of targeting messenger RNA surveillance factor PELOTA for developing virus resistance in plants.","authors":"Anik Majumdar, Yeluru Mohan Babu, Firoz Mondal, Mehulee Sarkar, Prantik Mazumder, Priyanka Pradhan, Ravinder Kumar, Sota Koeda, Anirban Roy","doi":"10.1007/s11103-026-01700-2","DOIUrl":"10.1007/s11103-026-01700-2","url":null,"abstract":"<p><p>The mRNA-surveillance factor, PELOTA is essential for maintaining translation fidelity and facilitating the degradation of faulty mRNAs. Initially recognized for its role in ribosome rescue and RNA quality control in eukaryotic cells, PELOTA has recently garnered attention for its diverse functions in plant biology as well as in plant-virus interactions. Numerous studies suggest that the PELOTA protein plays a distinctive role in determining either susceptibility or resistance to various plant pathogens, including viruses. Interestingly, PELOTA exhibits a dual function: while certain allelic variants confer resistance or susceptibility to diverse plant viruses, complete or severe disruption of its activity impairs fundamental processes of plant growth and development. In this review, we synthesize current knowledge of PELOTA-mediated mRNA surveillance across eukaryotes, critically examine its emerging role in shaping plant–virus dynamics, and assess the deleterious developmental consequences of its mutation in plants. Although disruption of PELOTA can enhance resistance to various pathogens, including viruses, it may also compromise RNA quality control and normal plant development. Thus, a thorough evaluation is essential before targeting PELOTA for engineering durable disease resistance in crops.</p>","PeriodicalId":20064,"journal":{"name":"Plant Molecular Biology","volume":"116 2","pages":""},"PeriodicalIF":3.7,"publicationDate":"2026-03-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12999637/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147481416","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Daniel Bustos, David Alarcón-Muñoz, Francisca Arriaza-Rodríguez, Felipe Moraga, Gabriela Urra, Carolina Parra-Palma, Francisca Hormazabal-Abarza, Patricio Ramos, Luis Morales-Quintana
{"title":"Changes in Alcohol dehydrogenase gene expression throughout strawberry fruit ripening process.","authors":"Daniel Bustos, David Alarcón-Muñoz, Francisca Arriaza-Rodríguez, Felipe Moraga, Gabriela Urra, Carolina Parra-Palma, Francisca Hormazabal-Abarza, Patricio Ramos, Luis Morales-Quintana","doi":"10.1007/s11103-026-01691-0","DOIUrl":"10.1007/s11103-026-01691-0","url":null,"abstract":"<p><p>Fruit aroma is a key determinant of organoleptic quality in strawberry (Fragaria × ananassa), with volatile esters being the major contributors to its characteristic scent. Alcohol dehydrogenases (ADHs) catalyze the conversion of aldehydes into alcohols, which serve as essential precursors for ester biosynthesis via alcohol acyltransferases (AAT). Despite their potential role in aroma formation, the molecular identity and functional properties of ADH family members in strawberry remain largely unexplored. Here, we present a comprehensive genome-wide analysis of the FaADH gene family in the cultivated strawberry genome. Eleven FaADH genes were identified and characterized based on gene structure, phylogeny, and promoter cis-element composition. Expression profiling across five fruit developmental stages revealed dynamic regulation of several isoforms, with FaADH5, FaADH8, and FaADH11 showing strong expression during early fruit development. These patterns were consistent with biochemical assays, which showed declining total ADH enzymatic activity as ripening progressed. Homology-based protein modeling and molecular docking predicted differential substrate affinities among isoforms, with FaADH5 and FaADH8 displaying favorable binding to 1-butanol and 1-hexanol. Molecular dynamics (MD) simulations further confirmed the structural stability of these interactions over time. The integration of expression, activity, and structural data supports a functional specialization within the FaADH family, with select isoforms likely contributing directly to the alcohol pool required for ester formation. These findings provide new insights into the molecular basis of aroma development in strawberry and highlight FaADH genes as potential targets for breeding or metabolic engineering aimed at improving fruit flavor.</p>","PeriodicalId":20064,"journal":{"name":"Plant Molecular Biology","volume":"116 2","pages":""},"PeriodicalIF":3.7,"publicationDate":"2026-03-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147481467","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"γ-Valerolactone promotes Solanum lycopersicum seedling growth through transcriptomic and plant hormone changes.","authors":"Fangfang Ren, Hui Shen, Weiye Chen, Siyue Sha, Shanshan Li, Xin Tao, Zhuorui Li, Weishou Shen, Nan Gao","doi":"10.1007/s11103-026-01699-6","DOIUrl":"10.1007/s11103-026-01699-6","url":null,"abstract":"<p><p>There is increasing interest in novel fertilizers to reduce dependency on chemical fertilizers in agriculture. Esters are promising stimulants. γ-Valerolactone, a volatile organic compound produced by Stutzerimonas stutzeri NRCB010, was suggested to promote tomato seedling growth under sterile conditions. We thus examined the effects of varying concentrations of γ-valerolactone on growth in hydroponic and greenhouse conditions, checked associated transcriptional changes, and measured the hormone contents. In this study, γ-valerolactone treatment significantly promote the tomato seedling growth, and the optimum concentration was 100 mg L− 1 and 250 mg L− 1 in hydroponic and greenhouse conditions, respectively. The content of IAA-aspartate, IAA-glutamate, indole-3-acetamide, indole-3-acetonitrile, indole-3-butyric acid, gibberellic acid 3 were all significantly increased in leaves, stem, and roots. Transcriptomic analysis revealed that when treated with γ-valerolactone for 6 h, there are more upregulated differentially expressed genes (DEGs) than downregulated DEGs, however, it’s opposite when treated with γ-valerolactone for 24 h. γ-Valerolactone may stimulate the growth of tomato seedlings through mechanisms such as photosynthesis, phytohormone signaling, and the biosynthesis of secondary metabolites. Our studies provide a theoretical basis for the application of γ -valerolactone as a new type of plant growth regulator and lay the foundation for the development of efficient and environmentally friendly agricultural biostimulants.</p>","PeriodicalId":20064,"journal":{"name":"Plant Molecular Biology","volume":"116 2","pages":""},"PeriodicalIF":3.7,"publicationDate":"2026-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147459348","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}