Nature ImmunologyPub Date : 2025-04-30DOI: 10.1038/s41590-025-02142-6
Myong-Hee Sung, Ranjan Sen
{"title":"Evolving Rel","authors":"Myong-Hee Sung, Ranjan Sen","doi":"10.1038/s41590-025-02142-6","DOIUrl":"https://doi.org/10.1038/s41590-025-02142-6","url":null,"abstract":"Genes in transcription factor families presumably arose to accommodate the increasingly complex regulatory needs of multicellular organisms. A study now identifies the basis for distinction between the NF-κB family members Rel and RelA.","PeriodicalId":19032,"journal":{"name":"Nature Immunology","volume":"35 1","pages":""},"PeriodicalIF":30.5,"publicationDate":"2025-04-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143893165","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Nature ImmunologyPub Date : 2025-04-30DOI: 10.1038/s41590-025-02138-2
Allison E. Daly, Abraham B. Chang, Prabhat K. Purbey, Kevin J. Williams, Shuxing Li, Benjamin D. Redelings, George Yeh, Yongqing Wu, Scott D. Pope, Byrappa Venkatesh, Sibon Li, Kaylin Nguyen, Joseph Rodrigues, Kelsey Jorgensen, Ananya Dasgupta, Trevor Siggers, Lin Chen, Stephen T. Smale
{"title":"Stepwise neofunctionalization of the NF-κB family member Rel during vertebrate evolution","authors":"Allison E. Daly, Abraham B. Chang, Prabhat K. Purbey, Kevin J. Williams, Shuxing Li, Benjamin D. Redelings, George Yeh, Yongqing Wu, Scott D. Pope, Byrappa Venkatesh, Sibon Li, Kaylin Nguyen, Joseph Rodrigues, Kelsey Jorgensen, Ananya Dasgupta, Trevor Siggers, Lin Chen, Stephen T. Smale","doi":"10.1038/s41590-025-02138-2","DOIUrl":"https://doi.org/10.1038/s41590-025-02138-2","url":null,"abstract":"<p>Adaptive immunity and the five vertebrate NF-κB family members first emerged in cartilaginous fish, suggesting that NF-κB family divergence helped to facilitate adaptive immunity. One specialized function of the NF-κB Rel protein in macrophages is activation of <i>Il12b</i>, which encodes a key regulator of T cell development. We found that <i>Il12b</i> exhibits much greater Rel dependence than inducible innate immunity genes in macrophages, with the unique function of Rel dimers depending on a heightened intrinsic DNA-binding affinity. Chromatin immunoprecipitation followed by sequencing experiments defined differential DNA-binding preferences of NF-κB family members genome-wide, and X-ray crystallography revealed a key residue that supports the heightened DNA-binding affinity of Rel dimers. Unexpectedly, this residue, the heightened affinity of Rel dimers, and the portion of the <i>Il12b</i> promoter bound by Rel dimers were largely restricted to mammals. Our findings reveal major structural transitions in an NF-κB family member and one of its key target promoters at a late stage of vertebrate evolution that apparently contributed to immunoregulatory rewiring in mammalian species.</p>","PeriodicalId":19032,"journal":{"name":"Nature Immunology","volume":"223 1","pages":""},"PeriodicalIF":30.5,"publicationDate":"2025-04-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143893282","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Nature ImmunologyPub Date : 2025-04-30DOI: 10.1038/s41590-025-02140-8
James A. Harker, Ryan S. Thwaites
{"title":"Unravelling the interplay between respiratory disease and the immune landscape in long COVID","authors":"James A. Harker, Ryan S. Thwaites","doi":"10.1038/s41590-025-02140-8","DOIUrl":"https://doi.org/10.1038/s41590-025-02140-8","url":null,"abstract":"Our immune system is vital in protecting against acute infections such as SARS-CoV-2. However, its long-term dysregulation after infection underlies many of the persistent symptoms of individuals with long COVID.","PeriodicalId":19032,"journal":{"name":"Nature Immunology","volume":"24 1","pages":""},"PeriodicalIF":30.5,"publicationDate":"2025-04-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143893150","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Nature ImmunologyPub Date : 2025-04-30DOI: 10.1038/s41590-025-02157-z
Ioana Staicu
{"title":"Short-range immunity","authors":"Ioana Staicu","doi":"10.1038/s41590-025-02157-z","DOIUrl":"https://doi.org/10.1038/s41590-025-02157-z","url":null,"abstract":"<p>The double-stranded RNA (dsRNA) sensor 2′,5′-oligoadenylate synthetase (OAS) produces the linear oligonucleotide 2-5A, which binds to and activates RNase L to cleave host and viral RNA and activate RIG-I-like receptors. In <i>Immunity</i>, Yan and colleagues show that 2-5A is transferred from cell to cell through gap junctions to mediate short-range communication between cells during infection and cancer. RNase L-knockout A549 cells treated with poly(I:C) activate RNA cleavage in OAS-knockout A549 cells, whereas A549 cells expressing a constitutively active OAS induce IFN and ISG expression in wild-type but not in RNase L-knockdown mouse embryonic fibroblasts, both in a manner dependent on the connexins CX43 and CX45, which form gap junctions. Most cell types produce 2-5A after treatment with IFN or poly(I:C) and some also export it to the extracellular space. Extracellular 2-5A is imported in cells through the same transporters as the cyclic dinucleotide cGAMP. In culture, cells that can produce, export and import 2-5A have better control of VSV viral infection. In a model of MC38 cells implanted subcutaneously into C56BL/6 mice, MC38 cells that cannot make or export 2-5A or MC38 cells implanted in <i>Rnasel</i><sup>−/−</sup>, <i>Rag1</i><sup>−/−</sup> or <i>Ifnar1</i><sup>−/−</sup> mice grow faster than their wild-type counterparts. Expression of OAS correlates positively with the level of CD8<sup>+</sup> T cell infiltration and better survival in human cancer.</p><p><b>Original reference:</b> <i>Immunity</i> <b>58</b>, 797–810 (2025)</p>","PeriodicalId":19032,"journal":{"name":"Nature Immunology","volume":"15 1","pages":""},"PeriodicalIF":30.5,"publicationDate":"2025-04-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143893161","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Nature ImmunologyPub Date : 2025-04-30DOI: 10.1038/s41590-025-02125-7
Tingting Fan, Chi Tai, Kiah C. Sleiman, Madeline P. Cutcliffe, Haram Kim, Ye Liu, Jianying Li, Gang Xin, Mollyanna Grashel, Laurie Baert, Chinwe Ekeocha, Paige Vergenes, Svetlana Lima, Wan-Lin Lo, Judith Lin, Beatriz Hanaoka, Trevor N. Tankersley, Min Wang, Xuan Zhang, George C. Tsokos, Wael Jarjour, Randy Longman, Hsin-Jung Joyce Wu
{"title":"Aberrant T follicular helper cells generated by TH17 cell plasticity in the gut promote extraintestinal autoimmunity","authors":"Tingting Fan, Chi Tai, Kiah C. Sleiman, Madeline P. Cutcliffe, Haram Kim, Ye Liu, Jianying Li, Gang Xin, Mollyanna Grashel, Laurie Baert, Chinwe Ekeocha, Paige Vergenes, Svetlana Lima, Wan-Lin Lo, Judith Lin, Beatriz Hanaoka, Trevor N. Tankersley, Min Wang, Xuan Zhang, George C. Tsokos, Wael Jarjour, Randy Longman, Hsin-Jung Joyce Wu","doi":"10.1038/s41590-025-02125-7","DOIUrl":"https://doi.org/10.1038/s41590-025-02125-7","url":null,"abstract":"<p>Much remains unknown regarding T follicular helper 17 (T<sub>FH</sub>17) cells commonly found in autoimmune patients. We previously showed that (and here ask why) egress of gut segmented filamentous bacteria (SFB)-induced T<sub>FH</sub> cells from Peyer’s patches (PP) to systemic sites promotes arthritis. We found splenic T<sub>FH</sub>17 cells are gut derived. Functional analyses using fate-mapping mice revealed a c-Maf-dependent and SFB-induced T<sub>H</sub>17-to-T<sub>FH</sub> cell reprogramming that dominantly occurs in PPs. Unlike conventional T<sub>FH</sub> cells, T<sub>H</sub>17-derived T<sub>FH</sub> cells are highly migratory and atypically concentrated in the dark zone of germinal centers (GCs). Compared to conventional T<sub>FH</sub> cells, T<sub>H</sub>17-derived T<sub>FH</sub> cells express higher levels of T<sub>FH</sub>-associated functional molecules and more robustly conjugate with B cells. Gain- and loss-of-function studies demonstrated their dominance in promoting GC B cells and arthritis. Notably, murine gut T<sub>H</sub>17-derived T<sub>FH</sub> signatures exist in rheumatoid arthritis patients. Thus, gut T cell plasticity generates atypical, potent T<sub>FH</sub> cells promoting systemic autoimmunity.</p>","PeriodicalId":19032,"journal":{"name":"Nature Immunology","volume":"24 1","pages":""},"PeriodicalIF":30.5,"publicationDate":"2025-04-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143893200","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Nature ImmunologyPub Date : 2025-04-30DOI: 10.1038/s41590-025-02144-4
Chunxing Zheng, Shaofeng Liu, Nastaran Fazel Modares, Michael St. Paul, Tak W. Mak
{"title":"Cholinergic T cells revitalize the tumor immune microenvironment: TIME to ChAT","authors":"Chunxing Zheng, Shaofeng Liu, Nastaran Fazel Modares, Michael St. Paul, Tak W. Mak","doi":"10.1038/s41590-025-02144-4","DOIUrl":"https://doi.org/10.1038/s41590-025-02144-4","url":null,"abstract":"<p>Crosstalk between the nervous system and the immune system shapes the tumor microenvironment. Cholinergic T cells, a unique population of T cell antigen receptor-induced acetylcholine-producing T cells, have emerged as an integrative interface between these two fundamental body systems. Here we review the distinct characteristics and functions of cholinergic T cells in cancer settings. We first outline the expression of choline acetyltransferase and the cholinergic machinery in T cells. We then describe the dysfunctional state of choline acetyltransferase-expressing T cells in cancer and delve into their modulatory effects on T cells, cancer cells and the tumor microenvironment, including its populations of immune cells, its vasculature and its nerves. We also discuss the clinical implications of harnessing the potential of cholinergic T cells and future directions for increasing our understanding of their importance and possible exploitation.</p>","PeriodicalId":19032,"journal":{"name":"Nature Immunology","volume":"37 1","pages":""},"PeriodicalIF":30.5,"publicationDate":"2025-04-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143893201","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Nature ImmunologyPub Date : 2025-04-29DOI: 10.1038/s41590-025-02148-0
{"title":"Acetylcholine-secreting B cells constrain macrophage responses to influenza virus","authors":"","doi":"10.1038/s41590-025-02148-0","DOIUrl":"https://doi.org/10.1038/s41590-025-02148-0","url":null,"abstract":"In our study, we identify a regulatory pathway by which release of the neurotransmitter acetylcholine by B cells suppresses TNF production by lung interstitial macrophages early in influenza virus infection. In this way, B cells reduce early lung inflammation and support eventual tissue regeneration, despite reducing early control of viral replication.","PeriodicalId":19032,"journal":{"name":"Nature Immunology","volume":"35 1","pages":""},"PeriodicalIF":30.5,"publicationDate":"2025-04-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143884826","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Nature ImmunologyPub Date : 2025-04-23DOI: 10.1038/s41590-025-02143-5
{"title":"Interferon-β treatment restores myeloid function and reverses immunosuppression in sepsis","authors":"","doi":"10.1038/s41590-025-02143-5","DOIUrl":"https://doi.org/10.1038/s41590-025-02143-5","url":null,"abstract":"Systemic inflammation, such as sepsis, starts with excessive inflammation and is followed by a long-lasting immunosuppressed state. Using single-cell transcriptomics and functional assays, we show that the immunosuppression is driven by impaired monocyte maturation and reduced type I interferon signaling, which could be reversed by treatment with interferon-β.","PeriodicalId":19032,"journal":{"name":"Nature Immunology","volume":"32 1","pages":""},"PeriodicalIF":30.5,"publicationDate":"2025-04-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143862801","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Nature ImmunologyPub Date : 2025-04-22DOI: 10.1038/s41590-025-02123-9
Emmanuel L. Gautier
{"title":"Endothelium calls macrophages for destruction","authors":"Emmanuel L. Gautier","doi":"10.1038/s41590-025-02123-9","DOIUrl":"https://doi.org/10.1038/s41590-025-02123-9","url":null,"abstract":"A mouse model of high cholesterol diet and cigarette smoke inhalation provides insights into the roles of macrophage and endothelial dysfunction in the development of abdominal aortic aneurysm.","PeriodicalId":19032,"journal":{"name":"Nature Immunology","volume":"37 1","pages":""},"PeriodicalIF":30.5,"publicationDate":"2025-04-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143857274","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Nature ImmunologyPub Date : 2025-04-22DOI: 10.1038/s41590-025-02124-8
Antonio Cembellin-Prieto, Zheng Luo, Heather Kulaga, Nicole Baumgarth
{"title":"B cells modulate lung antiviral inflammatory responses via the neurotransmitter acetylcholine","authors":"Antonio Cembellin-Prieto, Zheng Luo, Heather Kulaga, Nicole Baumgarth","doi":"10.1038/s41590-025-02124-8","DOIUrl":"https://doi.org/10.1038/s41590-025-02124-8","url":null,"abstract":"<p>The rapid onset of innate immune defenses is critical for early control of viral replication in an infected host and yet it can also lead to irreversible tissue damage, especially in the respiratory tract. Sensitive regulators must exist that modulate inflammation, while controlling the infection. In the present study, we identified acetylcholine (ACh)-producing B cells as such early regulators. B cells are the most prevalent ACh-producing leukocyte population in the respiratory tract demonstrated with choline acetyltransferase (ChAT)-green fluorescent protein (GFP) reporter mice, both before and after infection with influenza A virus. Mice lacking ChAT in B cells, disabling their ability to generate ACh (ChatBKO), but not those lacking ChAT in T cells, significantly, selectively and directly suppressed α7-nicotinic-ACh receptor-expressing interstitial, but not alveolar, macrophage activation and their ability to secrete tumor necrosis factor (TNF), while better controlling virus replication at 1 d postinfection. Conversely, TNF blockade via monoclonal antibody treatment increased viral loads at that time. By day 10 of infection, ChatBKO mice showed increased local and systemic inflammation and reduced signs of lung epithelial repair despite similar viral loads and viral clearance. Thus, B cells are key participants of an immediate early regulatory cascade that controls lung tissue damage after viral infection, shifting the balance toward reduced inflammation at the cost of enhanced early viral replication.</p>","PeriodicalId":19032,"journal":{"name":"Nature Immunology","volume":"6 1","pages":""},"PeriodicalIF":30.5,"publicationDate":"2025-04-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143857505","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}