Nature ImmunologyPub Date : 2025-06-13DOI: 10.1038/s41590-025-02174-y
Madison R. Mix, Benjamin L. Kreitlow, Roger R. Berton, Julie Xu, Cori E. Fain, Stephanie van de Wall, Lecia L. Pewe, Lisa S. Hancox, Mariah A. Hassert, Shravan Kumar Kannan, Sahaana A. Arumugam, Cassie M. Sievers, Gordon F. Buchanan, Thomas S. Griffith, Vladimir P. Badovinac, John T. Harty
{"title":"Physiological microbial exposure normalizes memory T cell surveillance of the brain and modifies host seizure outcomes","authors":"Madison R. Mix, Benjamin L. Kreitlow, Roger R. Berton, Julie Xu, Cori E. Fain, Stephanie van de Wall, Lecia L. Pewe, Lisa S. Hancox, Mariah A. Hassert, Shravan Kumar Kannan, Sahaana A. Arumugam, Cassie M. Sievers, Gordon F. Buchanan, Thomas S. Griffith, Vladimir P. Badovinac, John T. Harty","doi":"10.1038/s41590-025-02174-y","DOIUrl":"https://doi.org/10.1038/s41590-025-02174-y","url":null,"abstract":"<p>Recent studies have highlighted the presence of memory T cells in human brains, some of which are specific for peripheral infections. To address their potential origins, we used two models of polymicrobial exposure to ‘normalize’ the immune systems of specific pathogen-free mice and queried the impact on brain T cell biology. Here, we show that cohousing and sequential infection induce marked enhancement of memory T cells in the brain tissue of mice. These resident and circulating memory T cells localized to diverse brain regions where dynamic interactions with myeloid cells occurred. Following an induced seizure, brain-localized memory T cells were functionally altered in microbe-experienced mice. Microbial exposure also induced T cell-dependent changes in seizure duration. These data not only suggest a potential origin for memory T cells in human brains but also reveal the ability of these cells to modulate brain biology, prompting the future utilization of microbe-experienced mice in studies of neurological health and disease.</p>","PeriodicalId":19032,"journal":{"name":"Nature Immunology","volume":"42 1","pages":""},"PeriodicalIF":30.5,"publicationDate":"2025-06-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144278579","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Nature ImmunologyPub Date : 2025-06-13DOI: 10.1038/s41590-025-02182-y
Elisabetta Petrozziello, Amina Sayed, João A. Freitas, Christine Federle, Jelena Nedjic, Sarina Ravens, Batuhan Akçabozan, Anna M. Schulz, Dietmar Zehn, Marc Schmidt-Supprian, Reinhard Obst, Immo Prinz, Martijn Verdoes, Jan Kisielow, Thomas Reinheckel, Tobias Straub, Stephen R. Daley, Ludger Klein
{"title":"Cathepsin L-dependent positive selection shapes clonal composition and functional fitness of CD4+ T cells","authors":"Elisabetta Petrozziello, Amina Sayed, João A. Freitas, Christine Federle, Jelena Nedjic, Sarina Ravens, Batuhan Akçabozan, Anna M. Schulz, Dietmar Zehn, Marc Schmidt-Supprian, Reinhard Obst, Immo Prinz, Martijn Verdoes, Jan Kisielow, Thomas Reinheckel, Tobias Straub, Stephen R. Daley, Ludger Klein","doi":"10.1038/s41590-025-02182-y","DOIUrl":"https://doi.org/10.1038/s41590-025-02182-y","url":null,"abstract":"<p>The physiological significance of thymic positive selection and its reliance on a single stromal cell type, cortical thymic epithelial cells, remain incompletely understood. The lysosomal cysteine protease cathepsin L (CTSL) has been implicated in generating major histocompatibility complex class II-bound peptides in cortical thymic epithelial cells for efficient CD4<sup>+</sup> T cell differentiation. Here, we addressed the extent and nature of the CD4<sup>+</sup> T cell repertoire changes associated with CTSL deficiency. In the absence of CTSL, a highly selective loss of T cell receptors resulted in a markedly reduced repertoire diversity. However, a similarly large proportion of nominally ‘CTSL-independent’ T cell receptors were retained. Clones representative of the second category experienced weaker positive selection signals in the absence of CTSL, which were sufficient for further maturation yet imprinted aberrant responsiveness to agonist stimulation and impaired homeostatic behavior. Together, these findings demonstrate that CTSL is crucial for both shaping full repertoire diversity and optimizing CD4<sup>+</sup> T cell functionality.</p>","PeriodicalId":19032,"journal":{"name":"Nature Immunology","volume":"1 1","pages":""},"PeriodicalIF":30.5,"publicationDate":"2025-06-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144278617","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Nature ImmunologyPub Date : 2025-06-13DOI: 10.1038/s41590-025-02173-z
Nuno L. Alves
{"title":"Let the CAThepsin L out of the thymus","authors":"Nuno L. Alves","doi":"10.1038/s41590-025-02173-z","DOIUrl":"https://doi.org/10.1038/s41590-025-02173-z","url":null,"abstract":"Cathepsin L, a lysosomal protease, is critical for thymic epithelial cell function, particularly in CD4+ T cell selection, TCR repertoire diversity and the regulation of peripheral immune responses.","PeriodicalId":19032,"journal":{"name":"Nature Immunology","volume":"170 1","pages":""},"PeriodicalIF":30.5,"publicationDate":"2025-06-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144278512","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Nature ImmunologyPub Date : 2025-06-13DOI: 10.1038/s41590-025-02196-6
Rittika Mallik, Rebecca Kusko, Andrea C. Baines, Reena Philip, Marc R. Theoret, Eline T. Luning Prak, Wenming Xiao
{"title":"The BCR-SEQC initiative","authors":"Rittika Mallik, Rebecca Kusko, Andrea C. Baines, Reena Philip, Marc R. Theoret, Eline T. Luning Prak, Wenming Xiao","doi":"10.1038/s41590-025-02196-6","DOIUrl":"https://doi.org/10.1038/s41590-025-02196-6","url":null,"abstract":"<p>B cells express a diverse repertoire of antigen receptors known as B cell receptors (BCRs). BCR proteins are composed of two identical heavy chains (IGH) and two identical light chains (IGK or IGL). BCR diversity is generated by V(D)J recombination, assembling V, D and J gene segments for the heavy chain or V and J segments for the light chain. Further diversification occurs via nucleotide addition and deletion at junctions between the recombining gene segments. The third complementarity-determining region (CDR3) of IGH is the most diverse part of the BCR and serves as a clonal marker. After BCR assembly in the bone marrow, B cells migrate to peripheral lymphoid organs to participate in immune responses. Here, BCRs undergo further modification by somatic hypermutation (SHM) and class-switch recombination (for example, from IgM to IgG, IgA or IgE). These processes refine BCR specificity and function<sup>1</sup>.</p><p>Adaptive immune receptor repertoire profiling (AIRR-seq) is performed by next-generation sequencing of BCR and T cell receptor (TCR) gene rearrangements<sup>2</sup>. AIRR-seq can evaluate hundreds to billions of antigen receptors per individual. Profiling blood, bone marrow or lymph node samples can reveal B cell clones associated with responses to vaccines, self (autoimmunity), or sizable expansions linked to lymphoid malignancies. Longitudinal sampling further enables the study of clonal recruitment and intraclonal diversification in response to specific antigens.</p>","PeriodicalId":19032,"journal":{"name":"Nature Immunology","volume":"7 1","pages":""},"PeriodicalIF":30.5,"publicationDate":"2025-06-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144278513","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Nature ImmunologyPub Date : 2025-06-10DOI: 10.1038/s41590-025-02175-x
{"title":"Resistance to anti-PD-1 therapy is driven by CD30+ regulatory T cell activity","authors":"","doi":"10.1038/s41590-025-02175-x","DOIUrl":"https://doi.org/10.1038/s41590-025-02175-x","url":null,"abstract":"We show that deletion of PD-1 enhances regulatory T (Treg) cell immunosuppressive function in the tumor microenvironment. This increased Treg cell function results from upregulation of a co-inhibitory receptor network driven by CD30 on PD-1-deficient Treg cells. Blocking CD30 reverses Treg cell-mediated promotion of tumor growth.","PeriodicalId":19032,"journal":{"name":"Nature Immunology","volume":"102 1","pages":""},"PeriodicalIF":30.5,"publicationDate":"2025-06-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144252293","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Nature ImmunologyPub Date : 2025-06-10DOI: 10.1038/s41590-025-02178-8
Jing Jin, Peidong Yan, Dongyao Wang, Lin Bai, Hao Liang, Xiaoyu Zhu, Huaiping Zhu, Chen Ding, Haiming Wei, Yi Wang
{"title":"Targeting lactylation reinforces NK cell cytotoxicity within the tumor microenvironment","authors":"Jing Jin, Peidong Yan, Dongyao Wang, Lin Bai, Hao Liang, Xiaoyu Zhu, Huaiping Zhu, Chen Ding, Haiming Wei, Yi Wang","doi":"10.1038/s41590-025-02178-8","DOIUrl":"https://doi.org/10.1038/s41590-025-02178-8","url":null,"abstract":"<p>Dysfunction of natural killer (NK) cells can be associated with tumor-derived lactate in the tumor microenvironment. Lactate-induced lysine lactylation (Kla) is a posttranslational modification, and strategies aimed at augmenting NK cell resistance to Kla might enhance cytotoxicity. Here we show that increased Kla levels in NK cells are accompanied by impaired nicotinamide adenine dinucleotide metabolism, fragmented mitochondria and reduced cytotoxicity. Supplementation with nicotinamide riboside (a nicotinamide adenine dinucleotide precursor) and honokiol (a SIRT3 activator) enhanced NK cell cytotoxicity by reducing cellular Kla levels. This combination restores antileukemic activity of NK cells in vivo and ex vivo by modulating Kla on ROCK1, thereby inhibiting ROCK1–DRP1 signaling to prevent mitochondrial fragmentation. Altogether, this study shows how lactylation can compromise NK cells and highlights this lactylation as a target for NK cell-based immunotherapy to enhance resilience to lactate in the tumor microenvironment.</p>","PeriodicalId":19032,"journal":{"name":"Nature Immunology","volume":"4 1","pages":""},"PeriodicalIF":30.5,"publicationDate":"2025-06-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144252347","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Nature ImmunologyPub Date : 2025-06-02DOI: 10.1038/s41590-025-02188-6
Paula Jauregui
{"title":"CAR T cells affect cognition","authors":"Paula Jauregui","doi":"10.1038/s41590-025-02188-6","DOIUrl":"https://doi.org/10.1038/s41590-025-02188-6","url":null,"abstract":"<p>Chimeric antigen receptor (CAR) T cell therapy has been associated with acute neurotoxicity syndromes and with longer-term neurological symptoms. In <i>Cell</i>, Geraghty et al. identify the mechanism behind long-term cognitive symptoms after CAR T cell therapy. The authors used patient-derived xenograft mouse models of central nervous system (CNS) and non-CNS cancers, and an immunocompetent mouse model of a non-CNS cancer. They tested chronic effects on CNS immune state, oligodendroglial and myelin homeostasis, hippocampal neurogenesis, and cognitive function were tested after CAR T cell immunotherapy. CAR T cell therapy resulted in impaired cognition in the mice after clearing the tumor with CAR T cell therapy. They found increased levels of cytokines and chemokines in the cerebrospinal fluid, induced white matter microglial reactivity, disrupted oligodendroglial lineage cell dynamics, and impaired hippocampal neurogenesis. In a mouse model of acute lymphoblastic leukemia, microglial depletion rescued the cognitive deficits and inhibition of the receptor CCR3 rescued microglial dysregulation, oligodendrocyte loss and improved cognitive behavioral performance.</p><p><b>Original reference:</b> <i>Cell</i> https://doi.org/10.1016/j.cell.2025.03.041 (2025)</p>","PeriodicalId":19032,"journal":{"name":"Nature Immunology","volume":"7 1","pages":""},"PeriodicalIF":30.5,"publicationDate":"2025-06-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144201586","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Nature ImmunologyPub Date : 2025-06-02DOI: 10.1038/s41590-025-02180-0
David S. Khoury, Deborah Cromer, Bronwyn Bailey, Shanchita R. Khan, Deborah L. Burnett, Stephen J. Kent, Brian D. Rudd, Arnaud Marchant, Tari Turner, Miles P. Davenport
{"title":"Towards evidence-based immunology","authors":"David S. Khoury, Deborah Cromer, Bronwyn Bailey, Shanchita R. Khan, Deborah L. Burnett, Stephen J. Kent, Brian D. Rudd, Arnaud Marchant, Tari Turner, Miles P. Davenport","doi":"10.1038/s41590-025-02180-0","DOIUrl":"https://doi.org/10.1038/s41590-025-02180-0","url":null,"abstract":"Immunology is in an unprecedented era of exciting exploration, made possible by powerful new tools and technologies. To capitalize on this progress and translate discovery to meaningful impact, a parallel culture of ‘evidence-based immunology’ must be developed.","PeriodicalId":19032,"journal":{"name":"Nature Immunology","volume":"49 1","pages":""},"PeriodicalIF":30.5,"publicationDate":"2025-06-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144193328","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Nature ImmunologyPub Date : 2025-06-02DOI: 10.1038/s41590-025-02189-5
Laurie A. Dempsey
{"title":"Astrocyte TRAIL promotes GBM","authors":"Laurie A. Dempsey","doi":"10.1038/s41590-025-02189-5","DOIUrl":"https://doi.org/10.1038/s41590-025-02189-5","url":null,"abstract":"<p>Glioblastoma (GBM) is an aggressive tumor with limited treatment options. In <i>Nature</i>, Faust Akl et al. show that both human and mouse GBM indirectly suppress adaptive immune antitumor responses by inducing TRAIL expression in astrocytes. TRAIL<sup>+</sup> astrocytes trigger CD4<sup>+</sup> and CD8<sup>+</sup> T cell apoptosis by cognate interaction with DR4 and DR5 death receptors expressed on their cell surface. In the tumor microenvironment, the tryptophan metabolite kynurenine induces expression of <i>IL11</i> in human GBM cells, which in turn activates STAT3-regulated expression of TRAIL (encoded by <i>TNFSF10</i>) in neighboring astrocytes. In mouse models of GBM, blockade of either IL-11 or TRAIL increased survival. Hence, this astrocyte-dependent IL-11–TRAIL axis might prove to be a potential therapy option for patients with GBM.</p><p><b>Original reference:</b> <i>Nature</i> https://doi.org/10.1038/s41586-025-08997-x (2025)</p>","PeriodicalId":19032,"journal":{"name":"Nature Immunology","volume":"15 1","pages":""},"PeriodicalIF":30.5,"publicationDate":"2025-06-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144201589","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Nature ImmunologyPub Date : 2025-06-02DOI: 10.1038/s41590-025-02154-2
Jeffrey A. Bluestone, Bruce K. Burnett, Christine E. Crute, Mick D. Fellows, Megan Levings, Hervé Lebrec, Lucilia Pereira Mouriès, Jeffrey Rice, Patricia Rohan, Maria Grazia Roncarolo, Daniel Rotrosen
{"title":"Regulatory T cell therapies to treat autoimmune diseases and transplant rejection","authors":"Jeffrey A. Bluestone, Bruce K. Burnett, Christine E. Crute, Mick D. Fellows, Megan Levings, Hervé Lebrec, Lucilia Pereira Mouriès, Jeffrey Rice, Patricia Rohan, Maria Grazia Roncarolo, Daniel Rotrosen","doi":"10.1038/s41590-025-02154-2","DOIUrl":"https://doi.org/10.1038/s41590-025-02154-2","url":null,"abstract":"Regulatory T cell therapies have shown promise for treating autoimmune diseases and aiding transplantation. We summarize a recent NIAID/HESI-sponsored workshop that addressed key issues in non-clinical and clinical development vital to advancing this immune tolerance paradigm.","PeriodicalId":19032,"journal":{"name":"Nature Immunology","volume":"11 1","pages":""},"PeriodicalIF":30.5,"publicationDate":"2025-06-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144201593","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}