Zizhen Xu, Ying Meng, Jonathan St-Germain, Arezoo Afshari, Charneal L. Dixon, Saskia Heybrock, Qiang Zhao, Xialian Weng, Jishun Chen, Richard Collins, Hu Hu, Quan Zhou, Qiming Sun, Pinglong Xu, Wei Liu, Paul Saftig, Brian Raught, Gregory D. Fairn, Dante Neculai
{"title":"Sphingosine-1-phosphate signalling activates E-Syt1 to facilitate HDL-derived cholesterol transport","authors":"Zizhen Xu, Ying Meng, Jonathan St-Germain, Arezoo Afshari, Charneal L. Dixon, Saskia Heybrock, Qiang Zhao, Xialian Weng, Jishun Chen, Richard Collins, Hu Hu, Quan Zhou, Qiming Sun, Pinglong Xu, Wei Liu, Paul Saftig, Brian Raught, Gregory D. Fairn, Dante Neculai","doi":"10.1038/s41556-025-01665-2","DOIUrl":"https://doi.org/10.1038/s41556-025-01665-2","url":null,"abstract":"<p>Cholesterol derived from high-density lipoprotein (HDL) is rapidly redistributed to intracellular compartments in steroidogenic and bile-producing cells, but the molecular mechanisms governing this essential transport process remain poorly understood. Here we uncover a signalling cascade coordinating HDL-derived cholesterol transport through membrane contact sites between the endoplasmic reticulum (ER) and plasma membrane (PM). We find that HDL-resident sphingosine-1-phosphate (S1P) activates S1P receptor 3 and its associated G protein αq, leading to phospholipase-C-β3-mediated hydrolysis of phosphatidylinositol 4,5-bisphosphate and an elevation in cytosolic calcium. This calcium signal triggers the rapid recruitment of Extended-Synaptotagmin 1 to ER–PM membrane contact sites. Genetic or pharmacological disruption of this pathway impairs the non-vesicular transfer of HDL-derived cholesterol to intracellular compartments. Our findings reveal how HDL binding to the cell surface alters ER–PM membrane contact site dynamics through S1P signalling. This ensures efficient offloading and redistribution of HDL cholesterol to support steroid and bile acid synthesis.</p>","PeriodicalId":18977,"journal":{"name":"Nature Cell Biology","volume":"30 1","pages":""},"PeriodicalIF":21.3,"publicationDate":"2025-05-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144153385","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Psychological stress-induced ALKBH5 deficiency promotes tumour innervation and pancreatic cancer via extracellular vesicle transfer of RNA","authors":"Ziming Chen, Yifan Zhou, Chunling Xue, Lingxing Zeng, Shuang Deng, Zilan Xu, Mei Li, Hongzhe Zhao, Xiaowei He, Shaoqiu Liu, Ji Liu, Shuang Liu, Sihan Zhao, Shaoping Zhang, Xinyi Peng, Xiaoyu Wu, Ruihong Bai, Lisha Zhuang, Shaojia Wu, Jialiang Zhang, Dongxin Lin, Xudong Huang, Jian Zheng","doi":"10.1038/s41556-025-01667-0","DOIUrl":"https://doi.org/10.1038/s41556-025-01667-0","url":null,"abstract":"<p>The pathological role and mechanism of psychological stress in cancer progression are little known. Here we show in a mouse model that psychological stress drives pancreatic ductal adenocarcinoma (PDAC) progression by stimulating tumour nerve innervation. We demonstrate that nociception and other stressors activate sympathetic nerves to release noradrenaline, downregulating RNA demethylase alkB homologue 5 (Alkbh5) in tumour cells. Alkbh5 deficiency in these cancer cells causes aberrant <i>N</i><sup>6</sup>-methyladenosine (m<sup>6</sup>A) modification of RNAs, which are packed into extracellular vesicles and delivered to nerves in the tumour microenvironment, enhancing hyperinnervation and PDAC progression. ALKBH5 levels are inversely correlated with tumour innervation and survival time in patients with PDAC. Animal experiments identify a natural flavonoid, fisetin, that prevents neurons from taking in extracellular vesicles containing m<sup>6</sup>A-modified RNAs, thus suppressing the excessive innervation and progression of PDAC tumours. Our study sheds light on a molecular mechanism by which crosstalk between the neuroendocrine system and cancer cells links psychological stress and cancer progression and raises a potential strategy for PDAC therapy.</p>","PeriodicalId":18977,"journal":{"name":"Nature Cell Biology","volume":"47 1","pages":""},"PeriodicalIF":21.3,"publicationDate":"2025-05-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144137163","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
James R. W. Conway, Omkar Joshi, Jasmin Kaivola, Gautier Follain, Michalis Gounis, David Kühl, Johanna Ivaska
{"title":"Dynamic regulation of integrin β1 phosphorylation supports invasion of breast cancer cells","authors":"James R. W. Conway, Omkar Joshi, Jasmin Kaivola, Gautier Follain, Michalis Gounis, David Kühl, Johanna Ivaska","doi":"10.1038/s41556-025-01663-4","DOIUrl":"https://doi.org/10.1038/s41556-025-01663-4","url":null,"abstract":"<p>Integrins provide an essential bridge between cancer cells and the extracellular matrix, playing a central role in every stage of disease progression. Despite the recognized importance of integrin phosphorylation in several biological processes, the regulatory mechanisms and their relevance remained elusive. Here we engineer a fluorescence resonance energy transfer biosensor for integrin β1 phosphorylation, screening 96 protein tyrosine phosphatases and identifying Shp2 and PTP-PEST as negative regulators to address this gap. Mutation of the integrin NPxY(783/795) sites revealed the importance of integrin phosphorylation for efficient cancer cell invasion, further supported by inhibition of the identified integrin phosphorylation regulators Shp2 and Src kinase. Using proteomics approaches, we uncovered Cofilin as a component of the phosphorylated integrin-Dok1 complex and linked this axis to effective invadopodia formation, a process supporting breast cancer invasion. These data further implicate dynamic modulation of integrin β1 phosphorylation at NPxY sites at different stages of metastatic dissemination.</p>","PeriodicalId":18977,"journal":{"name":"Nature Cell Biology","volume":"57 1","pages":""},"PeriodicalIF":21.3,"publicationDate":"2025-05-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144137162","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Subhash B. Arya, Samuel P. Collie, Yang Xu, Martin Fernandez, Jonathan Z. Sexton, Shyamal Mosalaganti, Pierre A. Coulombe, Carole A. Parent
{"title":"Neutrophils secrete exosome-associated DNA to resolve sterile acute inflammation","authors":"Subhash B. Arya, Samuel P. Collie, Yang Xu, Martin Fernandez, Jonathan Z. Sexton, Shyamal Mosalaganti, Pierre A. Coulombe, Carole A. Parent","doi":"10.1038/s41556-025-01671-4","DOIUrl":"https://doi.org/10.1038/s41556-025-01671-4","url":null,"abstract":"<p>Acute inflammation, characterized by a rapid influx of neutrophils, is a protective response that can lead to chronic inflammatory diseases when left unresolved. We previously showed that secretion of LTB<sub>4</sub>-containing exosomes via nuclear envelope-derived multivesicular bodies is required for effective neutrophil infiltration during inflammation. Here we report that the co-secretion of these exosomes with nuclear DNA facilitates the resolution of the neutrophil infiltrate in a mouse skin model of sterile inflammation. Activated neutrophils exhibit rapid and repetitive DNA secretion as they migrate directionally using a mechanism distinct from suicidal neutrophil extracellular trap release and cell death. Packaging of DNA in the lumen of nuclear envelope-multivesicular bodies is mediated by lamin B receptor and chromatin decondensation. These findings advance our understanding of neutrophil functions during inflammation and the physiological relevance of DNA secretion.</p>","PeriodicalId":18977,"journal":{"name":"Nature Cell Biology","volume":"22 1","pages":""},"PeriodicalIF":21.3,"publicationDate":"2025-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144113742","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Dohun Kim, Rushendhiran Kesavan, Kevin Ryu, Trishna Dey, Austin Marckx, Cameron Menezes, Prakash P. Praharaj, Stewart Morley, Bookyung Ko, Mona H. Soflaee, Harrison J. Tom, Harrison Brown, Hieu S. Vu, Shih-Chia Tso, Chad A. Brautigam, Andrew Lemoff, Marcel Mettlen, Prashant Mishra, Feng Cai, Doug K. Allen, Gerta Hoxhaj
{"title":"Author Correction: Mitochondrial NADPH fuels mitochondrial fatty acid synthesis and lipoylation to power oxidative metabolism","authors":"Dohun Kim, Rushendhiran Kesavan, Kevin Ryu, Trishna Dey, Austin Marckx, Cameron Menezes, Prakash P. Praharaj, Stewart Morley, Bookyung Ko, Mona H. Soflaee, Harrison J. Tom, Harrison Brown, Hieu S. Vu, Shih-Chia Tso, Chad A. Brautigam, Andrew Lemoff, Marcel Mettlen, Prashant Mishra, Feng Cai, Doug K. Allen, Gerta Hoxhaj","doi":"10.1038/s41556-025-01695-w","DOIUrl":"https://doi.org/10.1038/s41556-025-01695-w","url":null,"abstract":"<p>Correction to: <i>Nature Cell Biology</i> https://doi.org/10.1038/s41556-025-01655-4, published online 21 April 2025.</p>","PeriodicalId":18977,"journal":{"name":"Nature Cell Biology","volume":"10 1","pages":""},"PeriodicalIF":21.3,"publicationDate":"2025-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144122802","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Three-way regulation of transcription","authors":"Sabrya Carim","doi":"10.1038/s41556-025-01675-0","DOIUrl":"https://doi.org/10.1038/s41556-025-01675-0","url":null,"abstract":"<p>Phosphorylation regulates the transition between phases of the RNA polymerase II (RNAPII) transcription cycle. The elongation factor SPT5 is phosphorylated by the CDK9 kinase on a flexible linker and in C-terminal repeat 1 (CTR1) to regulate promoter-proximal pausing and termination. In this study, Sun and Fisher report that the C-terminal repeat 2 (CTR2) region in SPT5 is also phosphorylated by CDK9, and this modification regulates the transcription elongation rate. The researchers investigated the effect of mutating CTR1 or CTR2 in a human colon cancer cell line and found that phosphorylated CTR1 and CTR2 exert opposing effects on elongation — CTR1 accelerates elongation after pause release, whereas CTR2 acts as a brake on RNAPII elongation rate. Despite opposing functions on RNAPII elongation, phosphorylation of CTR1 and CTR2 reinforced gene expression.</p><p>This study shows that three-way phosphorylation of SPT5 by CDK9 collectively regulates RNAPII pausing and elongation rate for productive transcription.</p>","PeriodicalId":18977,"journal":{"name":"Nature Cell Biology","volume":"32 1","pages":""},"PeriodicalIF":21.3,"publicationDate":"2025-05-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143979573","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Stem cells against Parkinson’s","authors":"Stylianos Lefkopoulos","doi":"10.1038/s41556-025-01676-z","DOIUrl":"https://doi.org/10.1038/s41556-025-01676-z","url":null,"abstract":"<p>Previous studies have developed an approach to derive midbrain dopaminergic neurons from human embryonic stem (hES) cells. Tabar et al. now use these cells in an open, phase 1 clinical trial aiming to treat Parkinson’s disease (PD).</p><p>The authors primarily assessed the safety and tolerability of bilateral grafts of cryopreserved dopaminergic neuron progenitor cells into the putamen of individuals with PD. Twelve patients were enrolled into two cohorts — five patients were subjected to low-dose treatment (0.9 × 10<sup>6</sup> cells per putamen) and seven patients were subjected to high-dose treatment (2.7 × 10<sup>6</sup> cells per putamen). Both cohorts underwent immunosuppression for a year. After 12 months, no major adverse events related to the transplant or immunosuppression were detected. Further studies showed that the transplanted dopaminergic neurons survived up to 18 months after transplantation. In addition, the high-dose cohort patients displayed an improvement in their PD symptoms.</p>","PeriodicalId":18977,"journal":{"name":"Nature Cell Biology","volume":"47 43 1","pages":""},"PeriodicalIF":21.3,"publicationDate":"2025-05-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143979574","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Stem cells in the clinic","authors":"Stylianos Lefkopoulos","doi":"10.1038/s41556-025-01677-y","DOIUrl":"https://doi.org/10.1038/s41556-025-01677-y","url":null,"abstract":"<p>Treatments that aim to alleviate the symptoms of Parkinson’s disease (PD) are only effective at the early stages and eventually lead to complications. Sawamoto et al. conduct an open-label, phase 1/2 clinical trial to test induced pluripotent stem (iPS) cell-derived dopaminergic cells as a therapeutic approach for PD.</p><p>The researchers bilaterally transplanted allogeneic iPS cell-derived dopaminergic progenitors into seven patients with PD, in which three received a low-dose treatment (2.1 –2.6 × 10<sup>6</sup> cells per hemisphere), four received high-dose treatment (5.3–5.5 × 10<sup>6</sup> cells per hemisphere), and all patients received tacrolimus as an immunosuppressant. No serious adverse events were detected, and MRI imaging revealed a gradual increase in the graft volume over 24 months, with no tumour-like features. Although the major purpose of the trial was to assess safety, Sawamoto et al. also reported some overall symptom improvements, thus providing data on the potential efficacy of the approach.</p>","PeriodicalId":18977,"journal":{"name":"Nature Cell Biology","volume":"43 1","pages":""},"PeriodicalIF":21.3,"publicationDate":"2025-05-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143979575","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"ALDH4A1 functions as an active component of the MPC complex maintaining mitochondrial pyruvate import for TCA cycle entry and tumour suppression","authors":"Che-Chia Hsu, Chi-Yun Wang, Rajesh Kumar Manne, Zhen Cai, Vasudevarao Penugurti, Rajni Kant, Ling Bai, Bo-Syong Pan, Tingjin Chen, Yuan-Ru Chen, Hsin-En Wu, Yan Jin, Haiwei Gu, Chia-Yang Li, Hui-Kuan Lin","doi":"10.1038/s41556-025-01651-8","DOIUrl":"https://doi.org/10.1038/s41556-025-01651-8","url":null,"abstract":"<p>MPC1 and MPC2 are two well-known components of the mitochondrial pyruvate carrier (MPC) complex maintaining MPC activity to transport pyruvate into mitochondria for tricarboxylic acid (TCA) cycle entry in mammalian cells. It is currently unknown whether there is an additional MPC component crucially maintaining MPC complex activity for pyruvate mitochondrial import. Here we show that ALDH4A1, a proline-metabolizing enzyme localized in mitochondria, serves as a previously unrecognized MPC component maintaining pyruvate mitochondrial import and the TCA cycle independently of its enzymatic activity. Loss of ALDH4A1 in mammalian cells impairs pyruvate entry to mitochondria, resulting in defective TCA cycle entry. ALDH4A1 forms an active trimeric complex with MPC1–MPC2 to maintain the integrity and oligomerization of MPC1–MPC2 and facilitates pyruvate transport in an in vitro system. ALDH4A1 displays tumour suppression by maintaining MPC complex activity. Our study identifies ALDH4A1 as an essential component of MPC for pyruvate mitochondrial import, TCA cycle entry and tumour suppression.</p>","PeriodicalId":18977,"journal":{"name":"Nature Cell Biology","volume":"20 1","pages":""},"PeriodicalIF":21.3,"publicationDate":"2025-05-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143933220","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Import mechanism of peroxisomal proteins with an N-terminal signal sequence","authors":"Michael L. Skowyra, Tom A. Rapoport","doi":"10.1038/s41556-025-01662-5","DOIUrl":"https://doi.org/10.1038/s41556-025-01662-5","url":null,"abstract":"<p>Most proteins imported into peroxisomes use a carboxy-terminal PTS1 signal, which is recognized by soluble receptors that transport the cargo through a nuclear pore-like conduit in the peroxisomal membrane formed by the tyrosine and glycine-rich YG domain of PEX13. The receptors then return to the cytosol through a separate retrotranslocon. Some peroxisomal proteins instead use an amino-terminal PTS2 signal that is recognized by an adaptor called PEX7, but how they are imported is poorly understood. Here we show that PTS2 cargo is moved through the YG phase by PEX7 bound to a receptor. After cargo release inside peroxisomes, PEX7 returns to the cytosol by moving back on its own through the YG phase. The chaperone PEX39 then extracts PEX7 from the phase on the cytosolic side and helps to reload PEX7 with a new receptor and cargo to start another import cycle. Our results provide a comprehensive model of PTS2 protein import.</p>","PeriodicalId":18977,"journal":{"name":"Nature Cell Biology","volume":"120 1","pages":""},"PeriodicalIF":21.3,"publicationDate":"2025-05-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143926908","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}