Marine genomics最新文献

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The complete genome sequence of Streptomyces sp. FIM 95-F1, a marine actinomycete that produces the antifungal antibiotic scopafungin 可产生抗真菌抗生素 Scopafungin 的海洋放线菌--链霉菌 FIM 95-F1 的完整基因组序列
IF 1.3 4区 生物学
Marine genomics Pub Date : 2024-09-06 DOI: 10.1016/j.margen.2024.101146
{"title":"The complete genome sequence of Streptomyces sp. FIM 95-F1, a marine actinomycete that produces the antifungal antibiotic scopafungin","authors":"","doi":"10.1016/j.margen.2024.101146","DOIUrl":"10.1016/j.margen.2024.101146","url":null,"abstract":"<div><p><em>Streptomyces</em> FIM95-F1, an actinomycete originating from mangroves of Quanzhou bay, exhibits the capability to produce the antifungal antibiotic scopafungin. Here, the complete genome of <em>Streptomyces</em> sp. FIM95-F1 is presented with a GC content of 71.04 %, comprising a 9,718,239-bp linear chromosome, 8236 protein-coding genes, 18 rRNA genes, 64 tRNA genes, 2 prophages, and 58 CRISPR regions. In silico analysis revealed the presence of 42 biosynthetic gene clusters (BGCs), the majority of which demonstrated similarity to both known and novel BGCs responsible for the biosynthesis of previously known and novel bioactive agents of microbial origin. A comprehensive comparison between the scopafungin BGC and niphimycin BGC has indicated a potential shared pathway for the biosynthesis of scopafungin. One of the intriguing findings of this study was the discovery of at least two novel BGCs (namely Cluster 26 and Cluster 32) present within biosynthetic gene clusters. Our findings suggest that <em>Streptomyces</em> sp. FIM95-F1 possesses significant potential in producing a diverse array of both known and novel bioactive compounds, which could be valuable in the field of drug discovery.</p></div>","PeriodicalId":18321,"journal":{"name":"Marine genomics","volume":null,"pages":null},"PeriodicalIF":1.3,"publicationDate":"2024-09-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142147689","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genomic analysis of Rhodopirellula sp. P2 reveals its role in fucoidan degradation Rhodopirellula sp. P2 的基因组分析揭示了其在褐藻糖胶降解中的作用
IF 1.3 4区 生物学
Marine genomics Pub Date : 2024-08-29 DOI: 10.1016/j.margen.2024.101145
{"title":"Genomic analysis of Rhodopirellula sp. P2 reveals its role in fucoidan degradation","authors":"","doi":"10.1016/j.margen.2024.101145","DOIUrl":"10.1016/j.margen.2024.101145","url":null,"abstract":"<div><p>Fucoidan, the main polysaccharide in various species of brown seaweed, has a high annual production. It is an important source of marine organic carbon and exhibits diverse biological activities and significant application potential. <em>Rhodopirellula</em> sp. P2, a novel marine bacterium of the phylum <em>Planctomycetota</em>, was isolated from intertidal algae samples collected from the Weihai coast, the Yellow Sea, China. The strain P2 is a Gram-negative, aerobic, and pear-shaped bacterium. Here, we report the complete genome sequence of <em>Rhodopirellula</em> sp. P2. The genome of strain P2 consists of a single circular chromosome with 7,291,416 bp and a GC content of 57.38 %, including 5462 protein-coding genes, 2 rRNA genes, and 48 tRNA genes. Genomic analysis revealed that strain P2 possessed 173 CAZymes and 106 sulfatases, indicating that strain P2 has the potential ability to utilize multiple polysaccharides, especially hydrolyze fucoidan to fucose. The genome of strain P2 also encodes a gene cluster related to bacterial microcompartment, suggesting the ability of strain P2 to metabolize fucose. These results enhance the understanding of the diversity and ecological functions of <em>Planctomycetota</em>, and also facilitate the exploitation of <em>Planctomycetota</em> and enzyme resources to utilize fucoidan. This study provides genetic insights into fucoidan catabolism by <em>Planctomycetota</em>, expanding our understanding of fucoidan-degrading microbial groups.</p></div>","PeriodicalId":18321,"journal":{"name":"Marine genomics","volume":null,"pages":null},"PeriodicalIF":1.3,"publicationDate":"2024-08-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142096649","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Complete genome sequence of the 4-hydroxybenzoate-degrading bacterium Gymnodinialimonas sp. 57CJ19, a potential novel species from intertidal sediments 潮间带沉积物中的潜在新物种--4-羟基苯甲酸盐降解细菌Gymnodinialimonas sp.57CJ19的完整基因组序列
IF 1.3 4区 生物学
Marine genomics Pub Date : 2024-07-17 DOI: 10.1016/j.margen.2024.101135
{"title":"Complete genome sequence of the 4-hydroxybenzoate-degrading bacterium Gymnodinialimonas sp. 57CJ19, a potential novel species from intertidal sediments","authors":"","doi":"10.1016/j.margen.2024.101135","DOIUrl":"10.1016/j.margen.2024.101135","url":null,"abstract":"<div><p>A bacterium <em>Gymnodinialimonas</em> sp. 57CJ19, was isolated from the intertidal sediments of Aoshan Bay, and further assays showed that it has the ability to degrade the antibacterial preservative 4-hydroxybenzoate. The complete genome sequence was sequenced, and phylogenomic analyses indicated that strain 57CJ19 represents a potential novel species in the genus <em>Gymnodinialimonas</em> (family <em>Rhodobacteraceae</em>). Its genome contains a 3,861,607-bp circular chromosome with 61.25% G + C content. Gene prediction revealed 3716 protein-encoding genes, 41 tRNA genes, 3 <em>rrn</em> operons, and 3 non-coding RNA genes. Functional annotation revealed a complete metabolic pathway for 4-hydroxybenzoate. The genome sequence of strain 57CJ19 provides new insights into the potential and underlying genomic basis of aromatic compound pollutant degradation by marine bacteria.</p></div>","PeriodicalId":18321,"journal":{"name":"Marine genomics","volume":null,"pages":null},"PeriodicalIF":1.3,"publicationDate":"2024-07-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141638562","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete genome sequence of the planctomycetotal bacterium Bremerella sp. P1 with abundant genes involved in polysaccharide degradation 含有丰富多糖降解基因的平面菌P1的完整基因组序列
IF 1.3 4区 生物学
Marine genomics Pub Date : 2024-06-20 DOI: 10.1016/j.margen.2024.101126
Jia-Xuan Wang, Jing Wang, Ji-Qing Liu, Jian Li, Wen-Xin Jiang, Fei Xu, Ping-Yi Li, Qi-Long Qin, Xiu-Lan Chen, Xi-Ying Zhang
{"title":"The complete genome sequence of the planctomycetotal bacterium Bremerella sp. P1 with abundant genes involved in polysaccharide degradation","authors":"Jia-Xuan Wang,&nbsp;Jing Wang,&nbsp;Ji-Qing Liu,&nbsp;Jian Li,&nbsp;Wen-Xin Jiang,&nbsp;Fei Xu,&nbsp;Ping-Yi Li,&nbsp;Qi-Long Qin,&nbsp;Xiu-Lan Chen,&nbsp;Xi-Ying Zhang","doi":"10.1016/j.margen.2024.101126","DOIUrl":"https://doi.org/10.1016/j.margen.2024.101126","url":null,"abstract":"<div><p>Isolated from intertidal sediment of the Yellow Sea, China, <em>Bremerella</em> sp. P1 putatively represents a novel species within the genus <em>Bremerella</em> of the family <em>Pirellulaceae</em> in the phylum <em>Planctomycetota</em>. The complete genome of strain P1 comprises a single circular chromosome with a size of 6,955,728 bp and a GC content of 55.26%. The genome contains 5772 protein-coding genes, 80 tRNA and 6 rRNA genes. A total of 147 CAZymes and 128 sulfatases have been identified from the genome of strain P1, indicating that the strain has the capability to degrade a wide range of polysaccharides. Moreover, a gene cluster related to bacterial microcompartments (BMCs) formation containing genes encoding the shell proteins and related enzymes to metabolize fucose or rhamnose is also found in the genome of strain P1. The genome of strain P1 represents the second complete one in the genus <em>Bremerella</em>, expanding the understanding of the physiological and metabolic characteristics, interspecies diversity, and ecological functions of the genus.</p></div>","PeriodicalId":18321,"journal":{"name":"Marine genomics","volume":null,"pages":null},"PeriodicalIF":1.3,"publicationDate":"2024-06-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141434258","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Marine eDNA sampling from submerged surfaces with paint rollers 用油漆辊从水下表面采集海洋 eDNA 样本
IF 1.3 4区 生物学
Marine genomics Pub Date : 2024-06-20 DOI: 10.1016/j.margen.2024.101127
Simon Jarman , Jason B. Alexander , Kathryn L. Dawkins , Sherralee S. Lukehurst , Georgia M. Nester , Shaun Wilkinson , Michael J. Marnane , Justin I. McDonald , Travis S. Elsdon , Euan S. Harvey
{"title":"Marine eDNA sampling from submerged surfaces with paint rollers","authors":"Simon Jarman ,&nbsp;Jason B. Alexander ,&nbsp;Kathryn L. Dawkins ,&nbsp;Sherralee S. Lukehurst ,&nbsp;Georgia M. Nester ,&nbsp;Shaun Wilkinson ,&nbsp;Michael J. Marnane ,&nbsp;Justin I. McDonald ,&nbsp;Travis S. Elsdon ,&nbsp;Euan S. Harvey","doi":"10.1016/j.margen.2024.101127","DOIUrl":"https://doi.org/10.1016/j.margen.2024.101127","url":null,"abstract":"<div><p>Environmental DNA (eDNA) analyses of species present in marine environments is the most effective biological diversity measurement tool currently available. eDNA sampling methods are an intrinsically important part of the eDNA biodiversity analysis process. Identification and development of eDNA sampling methods that are as rapid, affordable, versatile and practical as possible will improve rates of detection of marine species. Optimal outcomes of eDNA biodiversity surveys come from studies employing high levels of sampling replication, so any methods that make sampling faster and cheaper will improve scientific outcomes. eDNA sampling methods that can be applied more widely will also enable sampling from a greater range of marine surface micro-habitats, resulting in detection of a wider range of organisms. In this study, we compared diversity detection by several methods for sampling eDNA from submerged marine surfaces: polyurethane foam, nylon swabs, microfibre paint rollers, and sediment scoops. All of the methods produced a diverse range of species identifications, with &gt;250 multicellular species represented by eDNA at the study site. We found that widely-available small paint rollers were an effective, readily available and affordable method for sampling eDNA from underwater marine surfaces. This approach enables the sampling of marine eDNA using extended poles, or potentially by remotely operated vehicles, where surface sampling by hand is impractical.</p></div>","PeriodicalId":18321,"journal":{"name":"Marine genomics","volume":null,"pages":null},"PeriodicalIF":1.3,"publicationDate":"2024-06-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141434767","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genome analysis of Salinimicrobium sp. 3283s, a deep-sea bacterium isolated from the sediments of South China Sea, China 从中国南海沉积物中分离的深海细菌 Salinimicrobium sp.
IF 1.9 4区 生物学
Marine genomics Pub Date : 2024-06-18 DOI: 10.1016/j.margen.2024.101125
Shijie Bai , Kun Shang , Shuqian Zeng , Ziming Huang , Zhuang Han
{"title":"Genome analysis of Salinimicrobium sp. 3283s, a deep-sea bacterium isolated from the sediments of South China Sea, China","authors":"Shijie Bai ,&nbsp;Kun Shang ,&nbsp;Shuqian Zeng ,&nbsp;Ziming Huang ,&nbsp;Zhuang Han","doi":"10.1016/j.margen.2024.101125","DOIUrl":"https://doi.org/10.1016/j.margen.2024.101125","url":null,"abstract":"<div><p><em>Salinimicrobium</em> sp. 3283s is an aerobic, golden-yellow pigment-producing, <em>Flavobacteriaceae</em> bacterium isolated from the sediments at the depth of 1751 m in the South China Sea. In this study, we present the complete genome sequence of strain 3283s, which only have a single circular chromosome comprising 3,702,683 bp with 41.41% G + C content and no circular plasmid. In total, 3257 protein coding genes, 45 tRNA, 9 rRNA, and 13 sRNA genes were obtained. In terms of the function of gene annotation, strain 3283s was more different from <em>Salinimicrobium oceani</em> J15B91, which was isolated from the South China Sea at a similar depth, and more similar to a Mariana Trench-derived strain <em>Salinimicrobium profundisediminis</em> MT39, which was closer in phylogenetic taxonomic status, suggesting that strain 3283s possesses a stronger potential to adapt to the deep-sea environment. Furthermore, the high- pressure simulations also confirmed that strain 3283s can grow in both 30 MPa and 60 MPa hydrostatic pressure environments, and that it grows better in 30 MPa hydrostatic pressure environments than in 60 MPa hydrostatic pressure environments. In addition, we found a large number of genes in strain 3283s that can promote better adaptation of the bacteria to the low oxygen and high hydrostatic pressure (HHP) environment of the deep sea, such as biosynthetic enzymes of antioxidant pigments, genes encoding cytochromes with enhanced affinity for oxygen, proteins for adaptation to HHP, and genes encoding TonB-dependent transporters in the absence of flagella.</p></div>","PeriodicalId":18321,"journal":{"name":"Marine genomics","volume":null,"pages":null},"PeriodicalIF":1.9,"publicationDate":"2024-06-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141423706","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genomic profiling of biosynthetic potentials of medicinal secondary metabolites for ‘Aliisedimentitalea scapharcae’ KCTC 42119T, isolated from ark shell 从蚶壳中分离出的'Aliisedimentitalea scapharcae' KCTC 42119T 的药用次生代谢物生物合成潜力基因组剖析
IF 1.9 4区 生物学
Marine genomics Pub Date : 2024-06-07 DOI: 10.1016/j.margen.2024.101124
Jin-Cheng Rong , Lin-Lin Cui , Na Li , Mao-Li Yi , Bo-Tao Huang , Qi Zhao
{"title":"Genomic profiling of biosynthetic potentials of medicinal secondary metabolites for ‘Aliisedimentitalea scapharcae’ KCTC 42119T, isolated from ark shell","authors":"Jin-Cheng Rong ,&nbsp;Lin-Lin Cui ,&nbsp;Na Li ,&nbsp;Mao-Li Yi ,&nbsp;Bo-Tao Huang ,&nbsp;Qi Zhao","doi":"10.1016/j.margen.2024.101124","DOIUrl":"https://doi.org/10.1016/j.margen.2024.101124","url":null,"abstract":"<div><p>Microorganisms living with higher organisms are valuable sources of bioactive substances like antibiotics, which could assist them competing for more and better nutrients or space. Here, we focused on a marine animal-associated bacterium, ‘<em>Aliisedimentitalea scapharcae</em>’ KCTC 42119<sup>T</sup>, which was isolated from ark shell collected from Gang-Jin bay of South Korea. We evaluated its biosynthetic potentials of medicinal secondary metabolites by <em>de novo</em> genome sequencing. The complete genome of strain KCTC 42119<sup>T</sup> sequenced is 5,083,900 bp and is comprised of one circular chromosome and four circular plasmids. Functional genome analysis by antiSMASH v7.1.0 showed that there are nine biosynthetic gene clusters encoded on the chromosome. The annotated secondary metabolites include antibiotic corynecin, cytoprotective ectoine and antineoplastic ET-743 (Yondelis), which suggested strain KCTC 42119<sup>T</sup> possesses potentials to synthesize a series of secondary metabolites of pharmaceutical utility. Genome analysis of ‘<em>A. scapharcae</em>’ also provides more insights into mining bioactive substances from animal-associated microorganisms.</p></div>","PeriodicalId":18321,"journal":{"name":"Marine genomics","volume":null,"pages":null},"PeriodicalIF":1.9,"publicationDate":"2024-06-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141289753","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Complete genome sequence of Kushneria phosphatilytica YCWA18T reveals the P-solubilizing activity of the genus Kushneria Kushneria phosphatilytica YCWA18T 的完整基因组序列揭示了 Kushneria 属的溶解 P 活性
IF 1.9 4区 生物学
Marine genomics Pub Date : 2024-05-30 DOI: 10.1016/j.margen.2024.101123
Guang-xun Du , Wen-sheng Yu , Ji-kun Su , Guo-chong Liu , Ping Gao , Xu-guang Hong , Ling-yun Qu
{"title":"Complete genome sequence of Kushneria phosphatilytica YCWA18T reveals the P-solubilizing activity of the genus Kushneria","authors":"Guang-xun Du ,&nbsp;Wen-sheng Yu ,&nbsp;Ji-kun Su ,&nbsp;Guo-chong Liu ,&nbsp;Ping Gao ,&nbsp;Xu-guang Hong ,&nbsp;Ling-yun Qu","doi":"10.1016/j.margen.2024.101123","DOIUrl":"https://doi.org/10.1016/j.margen.2024.101123","url":null,"abstract":"<div><p><em>Kushneria phosphatilytica</em> YCWA18<sup>T</sup> (= CGMCC 1.9149<sup>T</sup> = NCCB 100306<sup>T</sup>) was isolated from sediment collected in a saltern on the eastern coast of Yellow Sea in China. The genome was sequenced and comprised of one circular chromosome with the size of 3,624,619 bp and DNA G + C content of 59.13%. A total of 3267 protein-coding genes, 64 tRNA genes and 12 rRNA genes were obtained. Genomic annotation indicated that the genome of <em>K</em>. <em>phosphatilytica</em> YCWA18<sup>T</sup> had 34 genes involved in phosphorus (P) solubilization/metabolism, e.g., <em>gdh</em>, <em>pqq</em>, <em>phoA</em>, <em>phoD</em> and <em>phoX</em>, which products can convert insoluble P-containing compounds to more bio-available dissolved inorganic P. Comparative genomic analysis of <em>Kushneria</em> strains revealed that <em>gdh</em>, <em>pqq</em>, <em>phoA</em>, <em>phoD</em> and <em>phoX</em> were widely distributed in these strains, indicating the genus <em>Kushneria</em> may play an important role in the P cycle. Additionally, a multitude of salt tolerance genes were detected in the genome of <em>K</em>. <em>phosphatilytica</em> YCWA18<sup>T</sup>. This study and the genome sequence data will be available for further research and will provide insights into potential biotechnological and agricultural applications of <em>Kushneria</em> strains.</p></div>","PeriodicalId":18321,"journal":{"name":"Marine genomics","volume":null,"pages":null},"PeriodicalIF":1.9,"publicationDate":"2024-05-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141240375","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Complete genome sequence of a novel Pseudomonas sp. IT1137 isolated from Antarctic intertidal sediment showing potential for alkane degradation at low temperatures 从南极潮间带沉积物中分离出的新型假单胞菌 IT1137 的完整基因组序列显示其在低温下降解烷烃的潜力
IF 1.9 4区 生物学
Marine genomics Pub Date : 2024-05-14 DOI: 10.1016/j.margen.2024.101122
Hui-Yan Ge , Yi-He Zhang , Yong-Qiang Hu , Wei Han , Yu Du , Ting Hu , Yin-Xin Zeng
{"title":"Complete genome sequence of a novel Pseudomonas sp. IT1137 isolated from Antarctic intertidal sediment showing potential for alkane degradation at low temperatures","authors":"Hui-Yan Ge ,&nbsp;Yi-He Zhang ,&nbsp;Yong-Qiang Hu ,&nbsp;Wei Han ,&nbsp;Yu Du ,&nbsp;Ting Hu ,&nbsp;Yin-Xin Zeng","doi":"10.1016/j.margen.2024.101122","DOIUrl":"https://doi.org/10.1016/j.margen.2024.101122","url":null,"abstract":"<div><p><em>Pseudomonas</em> species are known for their diverse metabolic abilities and broad ecological distribution. They are fundamental components of bacterial communities and perform essential ecological functions in the environment. A psychrotrophic <em>Pseudomonas</em> sp. IT1137 was isolated from intertidal sediment in the coastal region of the Fildes Peninsula, King George Island, Antarctica. The strain contained a circular chromosome of 5,346,697 bp with a G + C content of 61.66 mol% and one plasmid of 4481 bp with a G + C content of 64.61 mol%. A total of 4848 protein-coding genes, 65 tRNA genes and 15 rRNA genes were obtained. Genome sequence analysis revealed that strain IT1137 not only is a potentially novel species of the genus <em>Pseudomonas</em> but also harbors functional genes related to nitrogen, sulfur and phosphorus cycling. In addition, genes involved in alkane degradation, ectoine synthesis and cyclic lipopeptide (CLP) production were detected in the bacterial genome. The results indicate the potential of the strain <em>Pseudomonas</em> sp. IT1137 for biotechnological applications such as bioremediation and secondary metabolite production and are helpful for understanding bacterial adaptability and ecological function in cold coastal environments.</p></div>","PeriodicalId":18321,"journal":{"name":"Marine genomics","volume":null,"pages":null},"PeriodicalIF":1.9,"publicationDate":"2024-05-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140918691","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Complete genome sequence analysis of a biosurfactant-producing bacterium Bacillus velezensis L2D39 生物表面活性剂生产细菌 Bacillus velezensis L2D39 的全基因组序列分析
IF 1.9 4区 生物学
Marine genomics Pub Date : 2024-05-07 DOI: 10.1016/j.margen.2024.101113
Yihan Ding , Shiping Wei , Gaiyun Zhang
{"title":"Complete genome sequence analysis of a biosurfactant-producing bacterium Bacillus velezensis L2D39","authors":"Yihan Ding ,&nbsp;Shiping Wei ,&nbsp;Gaiyun Zhang","doi":"10.1016/j.margen.2024.101113","DOIUrl":"https://doi.org/10.1016/j.margen.2024.101113","url":null,"abstract":"<div><p>Biosurfactants are amphipathic molecules with high industrial values owing to their chemical properties and stability under several environmental conditions. They have become attractive microbial products in the emerging biotechnology industry, offering a potential environmentally-friendly alternative to synthetic surfactants. Nowadays, several types of biosurfactants are commercially available for a wide range of applications in healthcare, agriculture, oil extraction and environmental remediation. In this study, a marine bacterium <em>Bacillus velezensis</em> L2D39 with the capability of producing biosurfactants was successfully isolated and characterized. The complete genome sequence of the bacterium <em>B. velezensis</em> L2D39 was obtained using PacBio Sequel HGAP.4, resulting in a sequence consisting of 4,140,042 base pairs with a 46.2 mol% G + C content and containing 4071 protein-coding genes. The presence of gene clusters associated with biosurfactants was confirmed through antiSMASH detection. The analysis of complete genome sequence will provide insight into the potential applications of this bacterium in biotechnological and natural product biosynthesis.</p></div>","PeriodicalId":18321,"journal":{"name":"Marine genomics","volume":null,"pages":null},"PeriodicalIF":1.9,"publicationDate":"2024-05-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140879644","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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