Marine DrugsPub Date : 2024-10-19DOI: 10.3390/md22100478
Maria Carpena, Cláudia S G P Pereira, Aurora Silva, Paula Barciela, A Olivia S Jorge, Ana Perez-Vazquez, Antia G Pereira, João C M Barreira, M Beatriz P P Oliveira, Miguel A Prieto
{"title":"Metabolite Profiling of Macroalgae: Biosynthesis and Beneficial Biological Properties of Active Compounds.","authors":"Maria Carpena, Cláudia S G P Pereira, Aurora Silva, Paula Barciela, A Olivia S Jorge, Ana Perez-Vazquez, Antia G Pereira, João C M Barreira, M Beatriz P P Oliveira, Miguel A Prieto","doi":"10.3390/md22100478","DOIUrl":"https://doi.org/10.3390/md22100478","url":null,"abstract":"<p><p>Macroalgae are known as abundant sources of phytochemicals, which offer a plethora of beneficial biological properties. Besides being the most notable classes of compounds found in macroalgae, phlorotannins, bromophenols, and terpenoids comprise some of the most relevant for their biological properties. Phlorotannins, mainly prevalent in brown algae and structurally characterized as complex polyphenolic compounds derived from phloroglucinol units, possess robust antioxidant, anti-inflammatory, antitumor, and cytotoxic activities, modulated by factors such as the degree of polymerization and environmental conditions. Bromophenols, halogenated compounds found in algae and other marine organisms, exhibit significant antioxidant and antiviral properties. Their diverse structures and bromination patterns contribute to their potential as therapeutic and chemical defense agents. Pigments (chemically described as primary terpenoids) play a critical role in light absorption and energy transfer in macroalgae and are divided into three main groups: (i) carotenoids, which are primarily found in brown algae and provide photoprotective and antioxidant benefits; (ii) chlorophylls, known for facilitating the conversion of light into biological energy; and (iii) phycobilins, which are mostly found in red algae and play important roles in light absorption and energy transfer, besides providing remarkable health benefits. Finally, secondary terpenoids, which are particularly abundant in red algae (e.g., the Rhodomelaceae family) are central to cellular interactions and exhibit significant antioxidant, antimicrobial, antidiabetic, and anti-inflammatory properties. This study represents a detailed analysis of the biosynthesis, structural diversity, and biological activities of these macroalgae metabolites, emphasizing their potential biological properties.</p>","PeriodicalId":18222,"journal":{"name":"Marine Drugs","volume":null,"pages":null},"PeriodicalIF":4.9,"publicationDate":"2024-10-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11509156/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142503290","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Marine DrugsPub Date : 2024-10-19DOI: 10.3390/md22100479
Sung-Gyu Lee, Jin-Woo Hwang, Hyun Kang
{"title":"Antioxidative and Anti-Atopic Dermatitis Effects of Peptides Derived from Hydrolyzed <i>Sebastes schlegelii</i> Tail By-Products.","authors":"Sung-Gyu Lee, Jin-Woo Hwang, Hyun Kang","doi":"10.3390/md22100479","DOIUrl":"https://doi.org/10.3390/md22100479","url":null,"abstract":"<p><p>Atopic dermatitis (AD) is a chronic inflammatory skin disorder associated with significant morbidity, including pruritus, recurrent skin lesions, and immune dysregulation. This study aimed to investigate the antioxidative and anti-AD effects of peptides derived from hydrolyzed <i>Sebastes schlegelii</i> (Korea rockfish) tail by-products. Hydrolysates were prepared using various enzymes, including Alcalase, Flavourzyme, Neutrase, and Protamex. Among them, Protamex hydrolysates demonstrated the highest ABTS radical scavenging activity with an RC<sub>50</sub> value of 69.69 ± 0.41 µg/mL. Peptides were further isolated from the Protamex hydrolysate using dialysis, fast protein liquid chromatography (FPLC), and high-performance liquid chromatography (HPLC). The most active peptide, STPO-B-II, exhibited a single peak and was identified as a sequence of Glu-Leu-Ala-Lys-Thr-Trp-His-Asp-Met-Lys, designated as MP003. In vivo experiments were conducted using a 2,4-dinitrochlorbenzene (DNCB)-induced AD model in NC/Nga mice. The isolated peptide, MP003, showed significantly reduced AD symptoms, including erythema, lichenification, and collagen deposition. Additionally, MP003 decreased epidermal and dermal thickness, eosinophil, and mast cell infiltration and downregulated the expression of pro-inflammatory cytokines IL-1β, IL-6, and IgE in serum and skin tissues. These findings suggest that peptides derived from <i>Sebastes schlegelii</i> tail by-products may serve as potential therapeutic agents for AD.</p>","PeriodicalId":18222,"journal":{"name":"Marine Drugs","volume":null,"pages":null},"PeriodicalIF":4.9,"publicationDate":"2024-10-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11509535/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142503215","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Marine DrugsPub Date : 2024-10-18DOI: 10.3390/md22100476
Jun-Oh Min, Min-Seob Kim, Boyeon Lee, Jong-Ku Gal, Jinyoung Jung, Tae-Wan Kim, Jisoo Park, Sun-Yong Ha
{"title":"Characterization of Phytoplankton-Derived Amino Acids and Tracing the Source of Organic Carbon Using Stable Isotopes in the Amundsen Sea.","authors":"Jun-Oh Min, Min-Seob Kim, Boyeon Lee, Jong-Ku Gal, Jinyoung Jung, Tae-Wan Kim, Jisoo Park, Sun-Yong Ha","doi":"10.3390/md22100476","DOIUrl":"https://doi.org/10.3390/md22100476","url":null,"abstract":"<p><p>We utilized amino acid (AA) and carbon stable isotope analyses to characterize phytoplankton-derived organic matter (OM) and trace the sources of organic carbon in the Amundsen Sea. Carbon isotope ratios of particulate organic carbon (δ<sup>13</sup>C-POC) range from -28.7‱ to -23.1‱, indicating that particulate organic matter originated primarily from phytoplankton. The dissolved organic carbon isotope (δ<sup>13</sup>C-DOC) signature (-27.1 to -21.0‱) observed in the sea-ice melting system suggests that meltwater contributes to the DOC supply of the Amundsen Sea together with OM produced by phytoplankton. A negative correlation between the degradation index and δ<sup>13</sup>C-POC indicates that the quality of OM significantly influences isotopic fractionation (r<sup>2</sup> = 0.59, <i>p</i> < 0.001). The AA distribution in the Amundsen Sea (5.43 ± 3.19 µM) was significantly larger than previously reported in the Southern Ocean and was associated with phytoplankton biomass (r<sup>2</sup> = 0.49, <i>p</i> < 0.01). Under conditions dominated by <i>P. antarctica</i> (DI = 2.29 ± 2.30), OM exhibited greater lability compared to conditions co-dominated by diatoms and <i>D. speculum</i> (DI = 0.04 ± 3.64). These results highlight the important role of <i>P. antarctica</i> in influencing the properties of OM, suggesting potential impacts on carbon cycling and microbial metabolic activity in the Amundsen Sea.</p>","PeriodicalId":18222,"journal":{"name":"Marine Drugs","volume":null,"pages":null},"PeriodicalIF":4.9,"publicationDate":"2024-10-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11509804/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142503273","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Talaroterpenoids A-F: Six New <i>Seco</i>-Terpenoids from the Marine-Derived Fungus <i>Talaromyces aurantiacus</i>.","authors":"Zi-Hong Peng, Hui Jia, Yan-Liang Luo, Li-Jun Zhang, Jia-Tong Zhou, Yuan-Han Xie, Li-Jun Wang, Jiang-Ke Qin, Jun Li, Guo-Hai Zhang, Rui-Yun Yang, Wei-Feng Xu","doi":"10.3390/md22100475","DOIUrl":"https://doi.org/10.3390/md22100475","url":null,"abstract":"<p><p>Six new highly oxidized <i>seco</i>-terpenoids, including three 3-<i>nor</i>-labdane type diterpenes, talaroterpenoids A-C (<b>1</b>-<b>3</b>), and three meroterpenoids containing an orthoester group, talaroterpenoids D-F (<b>6</b>-<b>8</b>), together with five known compounds (<b>4</b>-<b>5</b> and <b>9</b>-<b>11</b>), were isolated from the marine-derived fungus <i>Talaromyces aurantiacus</i>. Their chemical structures were elucidated through 1D, 2D NMR, HRESIMS, <i>J</i>-based configuration analysis (JBCA), computational ECD calculations, and single-crystal X-ray diffraction analysis. Compounds <b>1</b> and <b>2</b> contain an unusual 6,20-<i>γ</i>-lactone-bridged scaffold. Compounds <b>10</b> and <b>11</b> presented inhibitory effects on NO release in lipopolysaccharide (LPS)-induced BV-2 cells with IC<sub>50</sub> values of 11.47 and 11.32 μM, respectively. Talaroterpenoid C (<b>3</b>) showed moderate antifungal activity against <i>A. alternata</i> and <i>P. theae</i> Steyaert.</p>","PeriodicalId":18222,"journal":{"name":"Marine Drugs","volume":null,"pages":null},"PeriodicalIF":4.9,"publicationDate":"2024-10-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11509394/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142516501","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Marine DrugsPub Date : 2024-10-18DOI: 10.3390/md22100477
Xiaojing Liu, Qi Wang, Yun Zhang, Hanting Zhang
{"title":"Discovery of Anti-Inflammatory Alkaloids from Sponge <i>Stylissa massa</i> Suggests New Biosynthetic Pathways for Pyrrole-Imidazole Alkaloids.","authors":"Xiaojing Liu, Qi Wang, Yun Zhang, Hanting Zhang","doi":"10.3390/md22100477","DOIUrl":"https://doi.org/10.3390/md22100477","url":null,"abstract":"<p><p>Pyrrole-imidazole alkaloids (PIAs) are a class of marine sponge derived natural products which have complex carbon frameworks and broad bioactivities. In this study, four new alkaloids, stylimassalins A-B (<b>1</b>-<b>2</b>), <b>3</b>, and <b>5</b>, together with two known compounds (<b>4</b> and <b>6</b>), were isolated from <i>Stylissa massa</i>. Compounds <b>2</b>, <b>4</b>, and <b>6</b> are the C-2 brominated analogues of <b>1</b>, <b>3</b>, and <b>5</b>, respectively. Their structures display three different scaffolds, of which scaffold 1 (compounds <b>1</b>,<b>2</b>) is new. A new biosynthetic pathway from oroidin, through spongiacidin, to latonduine and scaffold 1 was proposed by our group, in which the C12-N13-cleavaged compounds of spongiacidin (scaffold 2), dubbed seco-spongiacidins (<b>3</b> and <b>4</b>), are recognized as a key bridged scaffold, to afford PIA analogues (<b>1</b>,<b>2</b> and <b>5</b>,<b>6</b>). An anti-inflammatory evaluation in a zebrafish inflammation model induced by copper sulphate (CuSO<sub>4</sub>) demonstrated that stylimassalins A and B (<b>1</b> and <b>2</b>) could serve as a promising lead scaffold for treating inflammation.</p>","PeriodicalId":18222,"journal":{"name":"Marine Drugs","volume":null,"pages":null},"PeriodicalIF":4.9,"publicationDate":"2024-10-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11509139/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142503278","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Marine DrugsPub Date : 2024-10-17DOI: 10.3390/md22100474
Ekaterina S Menchinskaya, Ekaterina A Chingizova, Evgeny A Pislyagin, Ekaterina A Yurchenko, Anna A Klimovich, Elena A Zelepuga, Dmitry L Aminin, Sergey A Avilov, Alexandra S Silchenko
{"title":"Mechanisms of Action of Sea Cucumber Triterpene Glycosides Cucumarioside A<sub>0</sub>-1 and Djakonovioside A Against Human Triple-Negative Breast Cancer.","authors":"Ekaterina S Menchinskaya, Ekaterina A Chingizova, Evgeny A Pislyagin, Ekaterina A Yurchenko, Anna A Klimovich, Elena A Zelepuga, Dmitry L Aminin, Sergey A Avilov, Alexandra S Silchenko","doi":"10.3390/md22100474","DOIUrl":"https://doi.org/10.3390/md22100474","url":null,"abstract":"<p><p>Breast cancer is the most prevalent form of cancer in women worldwide. Triple-negative breast cancer is the most unfavorable for patients, but it is also the most sensitive to chemotherapy. Triterpene glycosides from sea cucumbers possess a high therapeutic potential as anticancer agents. This study aimed to identify the pathways triggered and regulated in MDA-MB-231 cells (triple-negative breast cancer cell line) by the glycosides cucumarioside A<sub>0</sub>-1 (Cuc A<sub>0</sub>-1) and djakonovioside A (Dj A), isolated from the sea cucumber <i>Cucumaria djakonovi</i>. Using flow cytometry, fluorescence microscopy, immunoblotting, and ELISA, the effects of micromolar concentrations of the compounds on cell cycle arrest, induction of apoptosis, the level of reactive oxygen species (ROS), mitochondrial membrane potential (Δψm), and expression of anti- and pro-apoptotic proteins were investigated. The glycosides caused cell cycle arrest, stimulated an increase in ROS production, and decreased Δψm in MDA-MB-231 cells. The depolarization of the mitochondrial membrane caused by cucumarioside A<sub>0</sub>-1 and djakonovioside A led to an increase in the levels of APAF-1 and cytochrome C. This, in turn, resulted in the activation of caspase-9 and caspase-3 and an increase in the level of their cleaved forms. Glycosides also affected the expression of Bax and Bcl-2 proteins, which are associated with mitochondria-mediated apoptosis in MDA-MB-231 cells. These results indicate that cucumarioside A<sub>0</sub>-1 and djakonovioside A activate the intrinsic apoptotic pathway in triple-negative breast cancer cells. Additionally, it was found that treatment with Cuc A<sub>0</sub>-1 resulted in in vivo inhibition of tumor growth and metastasis of murine solid Ehrlich adenocarcinoma.</p>","PeriodicalId":18222,"journal":{"name":"Marine Drugs","volume":null,"pages":null},"PeriodicalIF":4.9,"publicationDate":"2024-10-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11509090/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142503289","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Marine DrugsPub Date : 2024-10-16DOI: 10.3390/md22100473
Martin George Thomas, Sylvie Blanc, Mickael Le Bechec, Thierry Pigot, Susana C M Fernandes
{"title":"Effect of Reactive Oxygen Species Photoproduced in Different Water Matrices on the Photostability of Gadusolate and Mycosporine-Serinol.","authors":"Martin George Thomas, Sylvie Blanc, Mickael Le Bechec, Thierry Pigot, Susana C M Fernandes","doi":"10.3390/md22100473","DOIUrl":"https://doi.org/10.3390/md22100473","url":null,"abstract":"<p><p>In the past few years, there has been an increasing interest in mycosporines-UV-absorbing molecules-bringing important insights into their intrinsic properties as natural sunscreens. Herein, mycosporine-serinol and gadusol (enolate form)/gadusolate were exposed to UV radiation via a solar simulator and the photostability was assessed in pure water and different natural matrices like river, estuary and ocean water. In general, this study revealed that the photodegradation of gadusolate and mycosporine-serinol was higher in natural matrices than in pure water due to the generation of singlet oxygen on UV irradiation. In pure water, in terms of photostability, both gadusolate and mycosporine-serinol were found to offer good protection and high performance in terms of photodegradation quantum yield ((0.8 ± 0.2) × 10<sup>-4</sup> and (1.1 ± 0.6) × 10<sup>-4</sup>, respectively). Nonetheless, the photostability of mycosporine-serinol was found to be superior to that of gadusolate in natural water, namely, ocean, estuary and river. The present work highlights how mycosporine-serinol and gadusolate resist photodegradation, and supports their role as effective and stable UV-B sunscreens.</p>","PeriodicalId":18222,"journal":{"name":"Marine Drugs","volume":null,"pages":null},"PeriodicalIF":4.9,"publicationDate":"2024-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11509266/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142503280","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Bio-Calcium from Skipjack Tuna Frame Attenuates Bone Loss in Ovariectomy-Induced Osteoporosis Rats.","authors":"Jirakrit Saetang, Acharaporn Issuriya, Watcharapol Suyapoh, Peerapon Sornying, Krisana Nilsuwan, Soottawat Benjakul","doi":"10.3390/md22100472","DOIUrl":"https://doi.org/10.3390/md22100472","url":null,"abstract":"<p><p>Bio-calcium derived from fish frames may offer several advantages for osteoporosis prevention. This study aimed to evaluate the effects of bio-calcium derived from skipjack tuna frames on bone loss in ovariectomized rats. Tuna bio-calcium was prepared through enzymatic hydrolysis, defatting, bleaching, and grinding processes. The bioavailability of calcium was tested using the Caco-2 cell monolayer model, showing that 13% of tuna bio-calcium was absorbed, compared to 10% for calcium carbonate. Rats were divided into the five following groups: (1) OVX, (2) sham-operated, (3), OVX + estrogen-treated (4) OVX + calcium carbonate-treated, and (5) OVX + tuna bio-calcium-treated. All groups were raised for eight weeks. Tuna bio-calcium was able to increase BV/TV by 26% in the femur and 29% in the tibia, compared to 13% and 17% in the OVX group, respectively. Trabecular thickness in the femur upsurged to 360 µm in the tuna group, while a thickness of 290 µm was observed in the control. Additionally, osteoclast numbers were reduced to 5 N.Oc/mm in the femur and 6 N.Oc/mm in the tibia in the tuna group, compared to 35 and 45 N.Oc/mm in the control. Overall, tuna bio-calcium effectively prevented bone loss and can serve as a promising natural alternative for managing osteoporosis.</p>","PeriodicalId":18222,"journal":{"name":"Marine Drugs","volume":null,"pages":null},"PeriodicalIF":4.9,"publicationDate":"2024-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11509285/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142503270","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Marine DrugsPub Date : 2024-10-14DOI: 10.3390/md22100471
Fengqi Yang, Yang Yang, Dandan Xiao, Poongho Kim, Jihee Lee, You-Jin Jeon, Lei Wang
{"title":"Anti-Photoaging Effects of Antioxidant Peptide from Seahorse (<i>Hippocampus abdominalis</i>) in In Vivo and In Vitro Models.","authors":"Fengqi Yang, Yang Yang, Dandan Xiao, Poongho Kim, Jihee Lee, You-Jin Jeon, Lei Wang","doi":"10.3390/md22100471","DOIUrl":"https://doi.org/10.3390/md22100471","url":null,"abstract":"<p><p>Overexposure to ultraviolet (UV) radiation can lead to photoaging, which contributes to skin damage. The objective of this study was to evaluate the effects of an antioxidant peptide (SHP2) purified from seahorse (<i>Hippocampus abdominalis</i>) alcalase hydrolysate on UVB-irradiated skin damage in human keratinocyte (HaCaT) and human dermal fibroblast (HDF) cells and a zebrafish model. The data revealed that SHP2 significantly enhanced cell viability by attenuating apoptosis through the reduction of intracellular reactive oxygen species (ROS) levels in UVB-stimulated HaCaT cells. Moreover, SHP2 effectively inhibited ROS, improved collagen synthesis, and suppressed the secretion of matrix metalloproteinases (MMPs) in UVB-irradiated HDF cells. SHP2 restored the protein levels of HO-1, Nrf2, and SOD, while decreasing Keap1 expression in UVB-treated HDF, indicating stimulation of the Keap1/Nrf2/HO-1 signaling pathway. Furthermore, an in vivo study conducted in zebrafish confirmed that SHP2 inhibited photoaging by reducing cell death through the suppression of ROS generation and lipid peroxidation. Particularly, 200 µg/mL of SHP2 exerted a remarkable anti-photoaging effect on both in vitro and in vivo models. These results demonstrate that SHP2 possesses antioxidant properties and regulates skin photoaging activities, suggesting that SHP2 may have the potential for use in the development of cosmetic products.</p>","PeriodicalId":18222,"journal":{"name":"Marine Drugs","volume":null,"pages":null},"PeriodicalIF":4.9,"publicationDate":"2024-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11509181/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142503269","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Revealing the Diversity of Sequences, Structures, and Targets of Peptides from South China Sea <i>Macrodactyla doreensis</i> Based on Transcriptomics.","authors":"Ziqiang Hua, Yanling Liao, Jinxing Fu, Xinru Li, Qianxia Xu, Limin Lin, Meiling Huang, Bingmiao Gao","doi":"10.3390/md22100470","DOIUrl":"https://doi.org/10.3390/md22100470","url":null,"abstract":"<p><p>The South China Sea is rich in sea anemone resources, and the protein and peptide components from sea anemone toxins comprise an important treasure trove for researchers to search for leading compounds. This study conducted a comprehensive transcriptomic analysis of the tentacles and column of <i>Macrodactyla doreensis</i> and explored the distribution and diversity of proteins and peptides in depth using bioinformatics, initially constructing a putative protein and peptide database. In this database, typical peptide families are identified through amino acid sequence analysis, and their 3D structures and potential biological activities are revealed through AlphaFold2 modeling and molecular docking. A total of 4239 transcripts were identified, of which the putative protein accounted for 81.53%. The highest content comprised immunoglobulin and a variety of proteases, mainly distributed in the column and related to biological functions. Importantly, the putative peptide accounted for 18.47%, containing ShK domain and Kunitz-type peptides, mainly distributed in the tentacles and related to offensive predatory behavior. Interestingly, 40 putative peptides belonging to eight typical peptide families were identified, and their structures and targets were predicted. This study reveals the diversity and complexity of <i>Macrodactyla doreensis</i> toxins and predicts their structure and targets based on amino acid sequences, providing a feasible approach for research regarding the discovery of peptides with potentially high activity.</p>","PeriodicalId":18222,"journal":{"name":"Marine Drugs","volume":null,"pages":null},"PeriodicalIF":4.9,"publicationDate":"2024-10-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11509556/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142503318","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}