{"title":"A Physical Organic Odyssey: From the Ultrafast Dynamics of Carbenes and Nitrenes to Contemporary Chemical Biology and Drug Discovery","authors":"Bin Yang, Jin Wang","doi":"10.1002/poc.70094","DOIUrl":"https://doi.org/10.1002/poc.70094","url":null,"abstract":"<p>The field of photoaffinity labeling (PAL) stands as a testament to the enduring power of physical organic chemistry in driving biological discovery. For nearly five decades, Professor Matthew S. Platz has occupied a singular position at the intersection of reactive intermediate chemistry, ultrafast spectroscopy, and chemical biology—transforming our mechanistic understanding of carbenes, nitrenes, oxenium ions, and their excited-state precursors into actionable design principles for molecular probes. This review, dedicated to Professor Platz on the occasion of his 75th birthday, traces the arc of his scientific legacy: from foundational matrix-isolation and laser flash photolysis studies of phenylcarbene and phenylnitrene, through the transformative discovery of the fluorine effect in aryl azide photochemistry, to the rigorous mechanistic revision of widely used nucleotide-based PAL probes. A central section surveys the remarkable breadth of Platz's ultrafast spectroscopic program—encompassing diarylcarbenes, acyl and sulfonyl azides, Wolff rearrangements, oxenium ions, and heteroatom-containing reactive intermediates—establishing the quantitative kinetic framework that underpins rational probe design. We then connect these foundational insights to the contemporary chemoproteomics landscape of 2020–2025: the diazo problem in diazirine labeling, the rational design of PALBOX probes, the emergence of acyl silane photophores, photocatalytic proximity labeling platforms, and quantitative mass spectrometry workflows. Throughout, we argue that the recurring motif of Platz's career—that rigorous kinetic and mechanistic characterization of fleeting intermediates is the prerequisite for rational reagent design—remains as productive and necessary today as when he first turned a laser onto a solution of phenyl azide.</p>","PeriodicalId":16829,"journal":{"name":"Journal of Physical Organic Chemistry","volume":"39 9","pages":""},"PeriodicalIF":1.9,"publicationDate":"2026-07-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/poc.70094","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148616107","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Jesus Daniel Loya, Abigail A. Moravek, Atropa Choi, Ren A. Wiscons
{"title":"Factors Affecting Nitrogen Atom Inversion in the Solid State","authors":"Jesus Daniel Loya, Abigail A. Moravek, Atropa Choi, Ren A. Wiscons","doi":"10.1002/poc.70093","DOIUrl":"https://doi.org/10.1002/poc.70093","url":null,"abstract":"<div>\u0000 \u0000 <p>The advancement of molecular ferroelectric materials for digital information storage requires systems that exhibit predictable polarization switching under ambient conditions. Recently, room-temperature polarization switching was observed from a single crystal of the nitrogen-centered triangulene, azangulene, revealing nitrogen inversion as a promising mechanism by which to achieve ferroelectricity. While an exciting addition to the library of organic molecular ferroelectrics, azangulene is limited by an irreversible single-crystal-to-single-crystal phase transition that kinetically traps the system in a nonpolar and nonferroelectric molecular conformation, necessitating subtle tuning of the conformational energy landscape to preserve room-temperature polarization switching, while eliminating (destabilizing) nonpolar conformers. Two triangulene design principles emerged from computational studies of azangulene derivatives focused on bridging atom selection and aryl functionalization. This work seeks to experimentally validate these computational design principles in the solid state, while identifying additional noteworthy factors that may impact the translatability of computational design principles to experimental solid-state systems. Using two model systems, nitrogen-containing 6/6/6 linear tricycles and bridged triphenylamine derivatives, four factors affecting nitrogen inversion are experimentally explored in the solid state: (i) size mismatch between the central and bridging atoms in triangulenes; (ii) the role of aryl functionalization on the central nitrogen and bridging atom geometries; (iii) (de)coupling between molecular bowl and nitrogen atom inversion; and (iv) the relative magnitude of intra- versus intermolecular factors on solid-state bowl conformation. From this work, we offer actionable strategies to tune nitrogen inversion in azangulene-based ferroelectric materials.</p>\u0000 </div>","PeriodicalId":16829,"journal":{"name":"Journal of Physical Organic Chemistry","volume":"39 9","pages":""},"PeriodicalIF":1.9,"publicationDate":"2026-07-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148533897","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Molecular Insights Into ESIPT-Controlled Photophysics of Amazonian Xanthones: A DFT/TD-DFT Study for Photoactive Antioxidant Design","authors":"Murillo H. Queiroz, Roberto Rivelino, Kaline Coutinho, Sylvio Canuto, Rodrigo Gester","doi":"10.1002/poc.70092","DOIUrl":"https://doi.org/10.1002/poc.70092","url":null,"abstract":"<div>\u0000 \u0000 <p>Xanthones are a prominent class of natural products with diverse biological activities, often modulated by their photophysical properties. Here, we present a theoretical investigation of the photoemission of five Amazonian xanthones (XAN1–5) in aqueous environment using Density Functional Theory (DFT) and Time-Dependent DFT (TD-DFT), combined with QTAIM and Voronoi Deformation Density (VDD) analyses. Our results show that all derivatives form stable intramolecular O–H···O hydrogen bonds in the ground state, with interaction energies ranging from −10.3 to −11.8 kcal/mol. Excitation leads to a direct ESIPT transformation only for XAN 2, XAN 3, and XAN 4, whereas XAN 1 and XAN 5 remain stabilized in the enolic form during the first excited-state relaxation. QTAIM topological parameters reveal that while ground-state H-bond strength is relatively similar across the series, VDD identifies a threshold of local charge polarization required for the proton mobility. This indicates that while ground-state H-bonding arrangement and local charge polarization are essential, they are not sufficient to induce ESIPT. Our analysis suggest that this process is governed by the specific electronic redistribution in the lowest excited state, which must enhance the acceptor basicity to trigger proton transfer. These findings provide molecular-level theoretical insights into the photophysics of Amazonian xanthones and offer a guide for the design of new photoactive antioxidant compounds.</p>\u0000 </div>","PeriodicalId":16829,"journal":{"name":"Journal of Physical Organic Chemistry","volume":"39 8","pages":""},"PeriodicalIF":1.9,"publicationDate":"2026-07-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148467290","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}