Journal of animal science最新文献

{"title":"Evaluation of Guanidinoacetic Acid Supplementation on Finishing Beef Steer Growth Performance, Skeletal Muscle Cellular Response, and Carcass Characteristics","authors":"Erika P Eckhardt, Wonseob Kim, Jerad Jaborek, Andrea J Garmyn, Donghun Kang, Jongkyoo Kim","doi":"10.1093/jas/skae337","DOIUrl":"https://doi.org/10.1093/jas/skae337","url":null,"abstract":"This study elucidated the effects of dosage-dependent guanidinoacetic acid (GAA) supplementation on growth performance, muscle responses, and carcass characteristics in finishing beef steers. Thirty crossbred Red Angus beef steers (395 ± 28.09 kg) were randomly assigned one of three treatments during a 146-day feedlot study: basal diet without GAA supplementation (CONTROL), 1g of GAA per 100 kg of BW daily (LOWGAA), and 2g of GAA per 100 kg of BW daily (HIGHGAA). Individual feed intake was monitored daily, growth performance parameters were collected every 28 days, and longissimus muscle (LM) biopsies occurred every 56 days. In biopsied LM, greater (P = 0.048) mRNA expression of IGF-1 was observed in LOWGAA steers on d 112 compared to the CONTROL group. LOWGAA steers also exhibited greater expression of myosin heavy chain (MHC) I compared to CONTROL steers (P < 0.05) and MHC IIA compared to both CONTROL and HIGHGAA treatment groups (P < 0.01) on d 112. GAA supplementation resulted in no change in carcass characteristics, serum and LM tissue metabolites, LM composition, and Warner-Bratzler shear force (WBSF) values (P > 0.05). Data collected from this study demonstrate the influence of GAA supplementation on the gene expression of MHC isoforms and their role in skeletal muscle growth, differentiation, and muscle fiber-typing.","PeriodicalId":14895,"journal":{"name":"Journal of animal science","volume":"63 1","pages":""},"PeriodicalIF":3.3,"publicationDate":"2024-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142563095","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Late gestation maternal infection with bovine viral diarrhea virus impacts offspring feedlot performance, digestion, blood parameters, and hot carcass weights.","authors":"T E Engle, O Guimaraes, H Y Loh, M P Thorndyke, H Van Campen, J N Kincade, J M Eder, T R Hansen","doi":"10.1093/jas/skae334","DOIUrl":"https://doi.org/10.1093/jas/skae334","url":null,"abstract":"<p><p>Fetal infection with bovine viral diarrhea virus (BVDV) after 150 d results in transient fetal infections (TI). Twenty-five unvaccinated, yearling Hereford heifers, seronegative for antibodies to BVDV1 and BVDV2, were bred by artificial insemination with X chromosome-bearing sperm from one Angus sire to examine the impact of TI on postnatal growth, estimated dry matter digestibility, blood parameters, and carcass characteristics. On d 175 of pregnancy, dams were intranasally inoculated with either sham control or 4.0 log median tissue culture infectious dose noncytopathic type2 BVDV to generate control or TI offspring, respectively. All control dams remained seronegative and all BVDV-inoculated dams seroconverted by d 14 post-inoculation. All control offspring were seronegative and all TI offspring were seropositive for antibodies to type 2 BVDV at birth. All offspring were raised on pasture until weaning. At weaning, all calves were transported to our research feedlot facility, housed in three pens, and transitioned to a high-energy concentrate-based diet. Heifer body weights (BW) and jugular blood samples were collected every 28 d. On d 84 of the feeding period, titanium dioxide was added to the diet of 12, age-paired, individually fed, heifers (6 control and 6 TI heifers; approximately 1 yr. of age) for 28 d and used to estimate dry matter digestibility. On d 105 and 240 ruminal fluid (approximately 900 ml) was collected from every animal using a stomach pump and analyzed for short chain fatty acids (SCFA). After approximately 287 d on feed, heifers were transported to a USDA-inspected abattoir and harvested. TI heifers had lighter final BW (P < 0.04) when compared to control heifers. Average daily gain was greater (P < 0.01) in control compared to TI heifers. TI heifers had a 2.2% lesser (P < 0.05) apparent dry matter digestibility, lighter (P < 0.01) hot carcass weights, but similar ruminal SCFA compared to controls. Blood glucose concentrations were similar (P > 0.8) between control and TI heifers. Ceruloplasmin activity (P < 0.03) and the oxidized form of glutathione (GSSG; P < 0.01), indicators of chronic inflammation, were increased in plasma from TI heifers compared to controls. Other indicators of oxidative stress were not impacted (P > 0.10) by TI status. These data suggest that fetal BVDV transient infection negatively impacts growth throughout the feeding period, possibly by impacting gastrointestinal tract function and increasing systemic inflammation.</p>","PeriodicalId":14895,"journal":{"name":"Journal of animal science","volume":" ","pages":""},"PeriodicalIF":2.7,"publicationDate":"2024-10-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142545539","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Dietary full-fat or defatted black soldier fly larvae can replace protein sources with no detrimental effect on growth performance or intestinal health of nursery pigs.","authors":"Yoon Soo Song, Dong Uk Ha, Kwanho Park, Beob Gyun Kim","doi":"10.1093/jas/skae333","DOIUrl":"10.1093/jas/skae333","url":null,"abstract":"<p><p>This work aimed to determine the effects of dietary full-fat or defatted black soldier fly larvae (BSFL) to replace protein sources on growth performance, blood parameters, intestinal morphology, and intestinal microbiota in nursery pigs and to investigate the effects of dietary defatted BSFL at up to 30% at the expense of protein sources on growth performance in nursery pigs. In Exp. 1, a total of 36 barrows with an initial body weight of 7.0 kg (standard deviation = 0.8) were allotted to 3 dietary treatments in a randomized complete block design with 4 replicate pens per treatment and 3 barrows per pen. A corn-soybean meal (SBM)-whey-based control diet was prepared with soy protein concentrate and fish meal as additional protein supplements. Two additional diets were prepared to include 20% full-fat BSFL or 20% defatted BSFL to replace soy protein concentrate and fish meal to maintain the same energy and nutrient concentrations in all diets. In the 28-day feeding trial, pigs fed the diet containing defatted BSFL tended to consume more feeds (P < 0.10) than other groups during days 14 to 28 and the overall period. On day 28, the serum blood urea nitrogen in pigs fed the control diet was less (P < 0.05) than that fed the full-fat or defatted BSFL, but fecal score and jejunal morphology did not differ among the treatment groups. Relative abundance of Mycoplasma in the ileal digesta was less (P < 0.05) in the pigs fed the diet containing full-fat or defatted BSFL compared with the control group. In Exp. 2, a total of 192 pigs with an initial body weight of 7.8 (standard deviation = 1.2 kg) were randomly allotted to one of 4 dietary treatments in a randomized complete block design with 6 replicate pens per treatment and 4 barrows and 4 gilts per pen. A control diet was mainly based on corn, SBM, fermented SBM, fish meal, and spray-dried plasma protein. Three additional diets were prepared to contain 10%, 20%, and 30% defatted BSFL to replace SBM, fermented SBM, fish meal, and spray-dried plasma protein to maintain for the same energy and nutrient concentrations. Average daily gain, average daily feed intake, gain:feed, and fecal score were not affected by increasing dietary defatted BSFL. Overall, dietary black soldier fly larvae did not compromise growth performance or intestinal health in nursery pigs. Black soldier fly larvae can be used in nursery pig diets to replace other protein sources without negative effects.</p>","PeriodicalId":14895,"journal":{"name":"Journal of animal science","volume":" ","pages":""},"PeriodicalIF":2.7,"publicationDate":"2024-10-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142521960","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Welfare and performance benefits of shade provision during summer for feedlot cattle in a temperate climatic zone.","authors":"David W Miller, Anne L Barnes, Teresa Collins, Liselotte Pannier, Joshua Aleri, Shane K Maloney, Fiona Anderson","doi":"10.1093/jas/skae332","DOIUrl":"10.1093/jas/skae332","url":null,"abstract":"<p><p>There is increasing interest from cattle lot-feeders in the use of shade to mitigate the effects of a potential heat stress event, though it is unclear whether the reported benefits of shade in previous studies conducted in more high-risk heat stress zones are pertinent in cooler temperate zones. The objectives of this study were to measure the welfare and performance benefits of shade provision for lot-fed cattle at a commercial feedlot located in a mild heat-stress risk zone in Western Australia. Six blocks of black Angus (Bos taurus) steers were inducted into the feedlot over six time-windows across a southern hemisphere summer, with 80 cattle per block housed in a partially shaded pen (providing 3.125 m2 of shade per animal) and 80 in an unshaded pen. Parameters assessed in 960 cattle over the first 70 days in the feedlot included weight gain, feed intake, and physiological and behavioral indices of overall health and welfare. Over the months of October through to May in which the experiment was conducted, shaded cattle demonstrated a modest 0.13 kg overall increase in average daily gain across the 70-day feedlot period (P = 0.13). There was no difference in dry matter intake between any block or treatment. The physiological and behavioral markers of health and welfare revealed that, even during to hottest times of the experiment, the cattle were quite able to thermoregulate, via increased panting and seeking shade (if available), to maintain physiological homeostasis. In addition, we measured the effect of heat stress and shade provision on the affective state of the cattle. Qualitative behavioral assessment was used to indicate that the cattle in the 'no stress' temperature humidity index (THI) category and the shaded cattle in the 'moderate stress' THI category displayed the most positive demeanor (P < 0.05), being described as more 'settled and sociable', while the unshaded cattle in the 'moderate stress' THI category and all cattle in the 'severe stress' THI category were described as more 'agitated/anxious' (P < 0.05). Overall, the findings from the present study suggest that there are definite welfare and modest performance benefits associated with providing cattle with shade in summer in a feedlot situated in a temperate climatic zone.</p>","PeriodicalId":14895,"journal":{"name":"Journal of animal science","volume":" ","pages":""},"PeriodicalIF":2.7,"publicationDate":"2024-10-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142521962","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Characterization of Microbial Populations in Two Distinct Dairy Manure Management Systems: Seasonal Effect and Implications for Pollutant Gases Emissions.","authors":"Esperanza Fuertes, Ahmad Reza Seradj, Joaquim Balcells, Jordi Maynegre, Gabriel de la Fuente","doi":"10.1093/jas/skae316","DOIUrl":"https://doi.org/10.1093/jas/skae316","url":null,"abstract":"<p><p>Following an increase of the demand of dairy products, higher quantities of manure are consequently produced, with the subsequent pollutant gas emission charge associated with its management. The two mostly used housing systems in the northeast of Spain, cubicles (CUB) and compost-bedded pack (CBP), entail different manure management techniques; thus, our main objective was to describe the microbiota present in manure of both systems during two distinct climatic situations (winter, mean temperature of 6.2ºC; and summer, mean temperature of 36.4ºC). The secondary aim was to correlate these microbiological profiles with literature findings on the emission of certain well-known pollutant gases from manure. CBP showed to have higher alpha biodiversity as well as presenting a remarkable clustering by season, but showed lower network complexity than CUB. Firmicutes/Bacteroidetes ratio was found superior in CUB, which also presented a significantly higher abundance of methanogenic genera belonging to Euryarchaeota phylum, such as Methanobrevibacter, Methanosaeta or Methanosarcina. On the other hand, CBP manure presented a significant presence of Corynebacterium, Pseudomonas or Truepera, among other genera, which activity has been linked to nitrogen (N) transformation pathways in manure. Season also had a relevant role to play on the fluctuation of these populations within each housing system under study. These results show how microbial populations change when manure is differently managed, and how these variations can be related to the synthesis of certain pollutant gases upon housing systems.</p>","PeriodicalId":14895,"journal":{"name":"Journal of animal science","volume":" ","pages":""},"PeriodicalIF":2.7,"publicationDate":"2024-10-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142500836","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Adding gastrointestinal parasite resistance to the breeding objective in hair sheep: initial steps","authors":"Robert M Forbes, Thomas W Murphy, Joan M Burke, David R Notter, Matthew L Spangler, Michael D MacNeil, Ronald M Lewis","doi":"10.1093/jas/skae327","DOIUrl":"https://doi.org/10.1093/jas/skae327","url":null,"abstract":"The U.S. Maternal Hair index was designed by the National Sheep Improvement Program (NSIP) to increase total weight of lamb weaned per ewe lambing (TW). Producers are interested in adding gastrointestinal nematode (GIN) resistance to this breeding objective since parasitism causes substantial economic losses. The NSIP provides producers with estimated breeding values (EBV) for post-weaning fecal egg count (PFEC), an indicator of GIN resistance. Our objective was to gauge the effects of including PFEC as another selection criterion and goal trait. Selection index theory was used to construct 11 indexes. First was a benchmark index with TW as the goal. Weaning weight, and number of lambs born and weaned, were selection criteria. An index was then designed with PFEC added as a selection criterion. In 9 more indices, PFEC was also included as a goal trait, where the economic value of TW was scaled relative to that of PFEC. PFEC received a scaled economic value of -1 with that of TW increasing from +1 to +5 at +0.5 increments. Selection criteria were modelled as EBV or phenotypes. Annual genetic responses in goal traits were predicted. The top 3% of males and 26% of females were selected. Breeding values and phenotypes were simulated for 200 lambs by Cholesky decomposition and used to generate index scores, with 100 replicates run. Concordances with the animals selected in the benchmark scenario were determined. Using EBV as selection criteria, TW increased by 1.46 kg/yr in the benchmark scenario. However, unfavorably, PFEC increased by 2.24%/yr. When using phenotypic criteria, TW increased by 0.52 kg/yr and PFEC by 0.28%/yr. Once added as a goal trait, PFEC decreased regardless of the scaled economic value of TW. However, responses in TW were also reduced, although less so as its scaled economic value increased. A scaled economic value of +3 for TW appeared reasonable over other choices with 79% of the emphasis placed on TW in the breeding objective. With EBV as selection criteria, PFEC declined by 7.96%/yr with 98% of the response in TW retained. Also, on average, 64% of males and 80% of females were chosen in common with the benchmark. With phenotypic selection criteria, PFEC declined by 5.13%/yr and 94% of the response in TW was retained; 61% of males and 80% of females were chosen in common with the benchmark. Implementing an index with scaled economic values of +3 for TW and -1 for PFEC would balance gains in TW with reductions in PFEC.","PeriodicalId":14895,"journal":{"name":"Journal of animal science","volume":"67 1","pages":""},"PeriodicalIF":3.3,"publicationDate":"2024-10-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142490409","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Lactation-related dynamics of bacterial and fungal microbiomes in feces of sows and gut colonization in suckling and newly weaned piglets","authors":"Fitra Yosi, Frederike Lerch, Julia C Vötterl, Simone Koger, Doris Verhovsek, Barbara U Metzler-Zebeli","doi":"10.1093/jas/skae321","DOIUrl":"https://doi.org/10.1093/jas/skae321","url":null,"abstract":"Changes in the gut microbial composition of the sow during lactation may influence the gut microbial colonization in their offspring, for which less information was available in the literature. This study aimed to assess: 1) the changes that occur in the bacterial and fungal communities in sow feces during the 28-day lactation period as well as in gastric and cecal digesta of piglets until one week after weaning, and 2) bacterial and fungal taxa in cecal digesta of the piglets postweaning that associate with fecal consistency. Aside from sow milk, piglets had access to creep feed from day of life (DoL) 3. Fecal samples from sows for microbial analysis were collected (n=20) on days postpartum (DPP) 1, 6, 13, 20 and 27, as well as from weaned piglets for fecal scoring on DoL 30 and 34. Gastric and cecal digesta of piglets was collected on DoL3, 7, 14, 21, 28, 31 and 35 (n=5/sex/DoL). Progressing lactation affected bacterial and fungal communities in sow feces, including 10.3- and 3.0-fold increases in the relative abundances of Lactobacillus from DPP1 to 6 and Kazachstania from DPP1 to 13, respectively (P &amp;lt; 0.001). Although time- and gut site-related differences existed, bacterial and fungal taxa found in sow feces were also present in gastric and cecal digesta of piglets, which supports their role for gut colonization in neonatal piglets. In piglets, bacterial and fungal alpha-diversities showed certain fluctuations during the suckling period, whereby weaning affected more the fungal than bacterial diversity at both gut sites (P &amp;lt; 0.05). At both gut sites, Lactobacillus largely increased from DoL3 to 7 and remained a dominating taxon until DoL35 (P &amp;lt; 0.05). Postweaning, plant-glycan fermenters (e.g., Prevotella-9) seemed to replace milk-glycan fermenting Fusobacterium and Bacteroides (P &amp;lt; 0.05). In gastric and cecal digesta, Kazachstania, Tausonia, Candida and Blumeria were dominating fungi from DoL3 to 35, with Kazachstania becoming even more dominant postweaning (P &amp;lt; 0.001). Fecal consistency was softer on DoL34 than 30 (P &amp;lt; 0.05). Correlation analysis identified that softer feces were linked to the relative abundances of plant-glycan and proteolytic bacterial taxa including pathobionts (e.g., Clostridium sensu stricto) in the cecum on DoL34. However, the potential association between cecal mold and plant-pathogenic fungi Talaromyces, Mrakia, and Blumeria and softer feces are worth to investigate in the future in relation to (gut) health of piglets.","PeriodicalId":14895,"journal":{"name":"Journal of animal science","volume":"114 1","pages":""},"PeriodicalIF":3.3,"publicationDate":"2024-10-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142490415","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Environmental benefits of crude protein reduction in growing pig diets: Is it worth going further?","authors":"Léa Cappelaere, Florence Garcia-Launay, Dalila Larios, Aude Simongiovanni, Stéphane Godbout, Marie-Pierre Letourneau-Montminy","doi":"10.1093/jas/skae317","DOIUrl":"https://doi.org/10.1093/jas/skae317","url":null,"abstract":"Nitrogen (N) excretion and emissions can be reduced in fattening pigs by reducing dietary crude protein (CP) level. Effects of this strategy are well documented for moderate CP reduction, but little literature exists on further CP reduction made possible by free isoleucine, histidine, and leucine. This trial evaluated the effects of two levels of reduction in CP on growth performance, N balance, and gaseous emissions. Forty-eight pigs were allocated to 12 gaseous emission-measuring chambers at 28 kg live weight. Three dietary treatments (CTRL; −1.2pt; −2.4pt), with a CP content, respectively, of 18.1%, 16.9%, and 15.0% in phase 1 (28–48 kg) and 16.1%, 15.0%, and 13.8% in phase 2 (48–80 kg), were fed ad libitum. Growth performance was recorded for each phase. Body lipid and protein composition were analyzed by dual-energy X-ray absorptiometry in two animals per chamber at the beginning and end of the trial. These results were used to calculate the N balance. Slurry volume and composition were measured at the end of the trial. Ammonia, methane, and nitrous oxide emissions were recorded continuously. Data were analyzed with a general linear model including the linear and quadratic effect of CP reduction and phase as fixed effects. A trend for a quadratic effect of CP reduction on feed intake was observed (P = 0.085) with a decrease from CTRL to −1.2pt and then an increase with the −2.4pt treatment. Daily gain and gain to feed were improved by the low-CP diets in phase 1 but were degraded in phase 2 (phase × CP interaction, P &amp;lt; 0.001) while body composition was not affected. Nitrogen excretion decreased with CP reduction (linear effect, P = 0.023) but tended to plateau with the low-CP diets (quadratic effect, P = 0.081). Methane emissions per kg of gain were reduced with CP reduction (linear effect, P = 0.031). Ammonia emissions decreased with CP reduction, mostly in phase 1 (phase × CP interaction, P = 0.015); however, the emission factor (g N-NH3 / g urinary N) was not affected. Nitrous oxide emissions were not affected by CP reduction and its emission factor (g N-N2O / g N) tended to increase (linear effect, P = 0.07). Slurry ammonia-N decreased (linear effect, P &amp;lt; 0.023; quadratic effect, P = 0.049), but other slurry components were not significantly impacted. In this trial, a plateau in N excretion and emission reduction was reached with the −2.4pt treatment. Nevertheless, it is important to study such a reduction in conditions closer to commercial ones.","PeriodicalId":14895,"journal":{"name":"Journal of animal science","volume":"7 1","pages":""},"PeriodicalIF":3.3,"publicationDate":"2024-10-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142490420","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Characterizing local pig breeds as reservoirs for the domestic pig genetic variability worldwide via contributions to gene diversity and allelic richness","authors":"Katherine D Arias, Iván Fernández, Juan Pablo Gutiérrez, Riccardo Bozzi, Isabel Álvarez, Félix Goyache","doi":"10.1093/jas/skae329","DOIUrl":"https://doi.org/10.1093/jas/skae329","url":null,"abstract":"Contributions to gene diversity and allelic richness were computed in a total of 2,260 domestic pig genotypes, sharing 53,626 autosomal SNPs, belonging to 98 pig subpopulations worldwide (41 Asian, 696 genotypes; 20 American, 262 genotypes; and 37 European, 686 genotypes), using 616 pig samples belonging to six different Cosmopolitan pig breeds as an outgroup, to ascertain if local pig subpopulation can be considered reservoirs of genetic diversity for the whole domestic pig species worldwide. Assessments were carried out for the whole dataset and separately for the American-European and Asian subsets. Effective population size was computed at the subpopulation level using molecular coancestry and linkage disequilibrium information to ensure that estimates of contributions to diversity were not affected by demographic issues. Most American and European pig subpopulations tended to have favorable contributions to both gene diversity and allelic richness. However, contributions to allelic richness were more consistent than those obtained for gene diversity, whether the computations are performed using either the whole dataset or the American-Asian subset, suggesting that allelic richness can be a key parameter to identify putative reservoirs for the species. The Asian pig subpopulations never contributed favorably to the allelic richness of the domestic pig metapopulation. Although these results can partially be explained by the highly divergent origins of the American-European and the Asian pig subpopulations, it cannot be discarded that the results obtained for the Asian subpopulations are biased due to a worse calling performance of the pig SNP arrays used for genotyping. The use of other potentially less biased sources of genotypic information is advisable to compare the Asian and American-European pig subpopulations genetic diversity.","PeriodicalId":14895,"journal":{"name":"Journal of animal science","volume":"236 1","pages":""},"PeriodicalIF":3.3,"publicationDate":"2024-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142490784","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Genetic determinism of sensitivity to environmental challenges using daily feed intake records in three lines of pigs","authors":"Tomasi Tusingwiire, Carolina Garcia-Baccino, Céline Carillier, Bruno Ligonesche, Catherine Larzul, Zulma G Vitezica","doi":"10.1093/jas/skae330","DOIUrl":"https://doi.org/10.1093/jas/skae330","url":null,"abstract":"In pig breeding, environmental challenges can affect the welfare and productivity of animals. Resilient animals have the capacity to be minimally affected by these environmental challenges. Understanding the genetic basis of sensitivity to these environmental challenges is crucial for selecting more resilient animals, thereby enhancing welfare and productivity. The aims of this study were to: (1) estimate the probability of the occurrence of an unrecorded environmental challenge at a given day using daily feed intake (DFI) data, and (2) evaluate the genetic determinism of environmental sensitivity in three pig lines bred in real selection conditions. Data comprised of 100,799, 186,247, and 304,826 DFI records from 1,618, 2,517, and 3,788 Landrace (LA), Large White (LW) and Piétrain (PI) male pigs, respectively. The pedigree included 3,730, 5,649, and 9,293 animals for LA, LW, and PI, respectively. The probabilities of the occurrence of an unrecorded environmental challenge at a given day were estimated via a mixture model. The probabilities (p) of being “high CV days” were then taken as reference and used in genetic analysis as an environmental descriptor to describe the environment. DFI records were analysed using two linear models: a linear reaction norm animal model (RNAM) and the animal model. (Co)variance components were estimated using average-information restricted maximum likelihood (AI-REML). The means of the probabilities of the occurrence of an environmental challenge for LA, LW, and PI were 0.24, 0.10, and 0.22, respectively, indicating that the probability of an environmental challenge was low for most of the days. The genetic correlations between the intercept and the slope obtained from the RNAM for LA, LW, PI were -0.52, 0.06, and -0.36, respectively. These findings suggest that selecting hypothetically for decreased DFI in non-stressful conditions would result in pigs with increased DFI in stressful conditions in the LA and PI lines, whereas it would have a minor impact on the environmental sensitivity of LW. The proportion of resilient animals for LA, LW, and PI was 75.0, 74.2, and 72.2%, respectively, implying that most of the animals were resilient. The study demonstrated that the slope of DFI is heritable and can effectively be used as an indicator of sensitivity to environmental challenges. These results are valuable in improving the resilience of livestock species to environmental challenges through genetic selection.","PeriodicalId":14895,"journal":{"name":"Journal of animal science","volume":"25 1","pages":""},"PeriodicalIF":3.3,"publicationDate":"2024-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142490786","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}