International Biodeterioration & Biodegradation最新文献

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Metagenomic analysis elucidates the dose-dependent impact of ofloxacin on sludge anaerobic fermentation for short-chain fatty acid production
IF 4.1 2区 环境科学与生态学
International Biodeterioration & Biodegradation Pub Date : 2025-02-01 DOI: 10.1016/j.ibiod.2025.106013
Jinghua Lv, Shujia Zhang, Siqi He, Tianyu Shi, Yuge Liang, Yunbei Li, Kaili Ma
{"title":"Metagenomic analysis elucidates the dose-dependent impact of ofloxacin on sludge anaerobic fermentation for short-chain fatty acid production","authors":"Jinghua Lv,&nbsp;Shujia Zhang,&nbsp;Siqi He,&nbsp;Tianyu Shi,&nbsp;Yuge Liang,&nbsp;Yunbei Li,&nbsp;Kaili Ma","doi":"10.1016/j.ibiod.2025.106013","DOIUrl":"10.1016/j.ibiod.2025.106013","url":null,"abstract":"<div><div>Antibiotics significantly impact the anaerobic fermentation of waste activated sludge (WAS). However, only a few studies have been conducted on the influence of ofloxacin (OFL) on the production of short-chain fatty acids (SCFAs) and its underlying mechanisms during WAS anaerobic fermentation. This study aimed to elucidate the impact of OFL on SCFA production from alkaline-pretreated WAS fermentation. The results showed that the addition of 10 mg OFL/kg SS led to a peak concentration of 2931.85 mg COD/L, resulting in a 1.1-fold increase in SCFA production compared to the control group. Further exploration revealed that OFL simultaneously promoted WAS solubilization, hydrolysis and acidification. Additionally, a low concentration of OFL increased the abundance of hydrolytic acidifying bacteria but decreased the abundance of SCFA-consuming bacteria. Metagenomic analysis revealed an enhanced abundance (103.76–134.56%) of critical genes related to extracellular hydrolysis (i.e., <em>malZ</em>, <em>bglX</em>, and <em>degP</em>), membrane transport (i.e., <em>msmX</em>, <em>gtsA</em>, and <em>gltI</em>), substrate metabolism (i.e., <em>glk</em>, <em>glnA</em>, and <em>gdhA</em>), and SCFAs biosynthesis (i.e., <em>ackA</em> and <em>fabG</em>) in the presence of low OFL concentration. These findings broadened our understanding regarding the influence exerted by OFL on WAS anaerobic fermentation.</div></div>","PeriodicalId":13643,"journal":{"name":"International Biodeterioration & Biodegradation","volume":"198 ","pages":"Article 106013"},"PeriodicalIF":4.1,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143165386","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
New insights in the metabolic functions of freshwater sulfate reducing communities during steel corrosion by biophysicochemical, 16S rRNA gene sequence and metaproteomic analysis
IF 4.1 2区 环境科学与生态学
International Biodeterioration & Biodegradation Pub Date : 2025-02-01 DOI: 10.1016/j.ibiod.2024.105995
Lipi Raghunatha Reddy , Carolin Egerter , Nico Jehmlich , Annika Fiskal , Lissa Helmholz , Sandro Castronovo , Peter Schweyen , Sven-Erik Wulf , Thomas Ternes , Arne Wick , Jutta Meier
{"title":"New insights in the metabolic functions of freshwater sulfate reducing communities during steel corrosion by biophysicochemical, 16S rRNA gene sequence and metaproteomic analysis","authors":"Lipi Raghunatha Reddy ,&nbsp;Carolin Egerter ,&nbsp;Nico Jehmlich ,&nbsp;Annika Fiskal ,&nbsp;Lissa Helmholz ,&nbsp;Sandro Castronovo ,&nbsp;Peter Schweyen ,&nbsp;Sven-Erik Wulf ,&nbsp;Thomas Ternes ,&nbsp;Arne Wick ,&nbsp;Jutta Meier","doi":"10.1016/j.ibiod.2024.105995","DOIUrl":"10.1016/j.ibiod.2024.105995","url":null,"abstract":"<div><div>To date, the focus of microbially induced corrosion (MIC) studies has largely been on marine environments. In this study, biocorrosion of steel enrichment cultures from a freshwater corrosion site was investigated under sulfate reducing conditions. Biomass and metabolic processes were monitored by measuring the time-dependent biophysicochemical parameters and with Fe<sup>0</sup> (steel) as the sole electron source, or with H<sub>2</sub> as control. Although yields and sulfate reduction rates were higher with H<sub>2</sub> due to its greater bioavailability, the yield coefficients indicated that bacterial growth with Fe<sup>0</sup> was equally efficient. Upon imaging of the steel surface by SEM, patches of cells embedded in an iron sulfide matrix on top of larger carbonate and phosphate minerals were observed. Cell number determination indicated that the cells on the steel surface constituted only a minor proportion (&lt;4%) of the total counts. The 16S rRNA gene sequencing revealed the enrichment of sulfate reducers next to acetogens, indicating a syntrophic relationship. In compliance with biophysicochemical analysis and estimated yield coefficients, metaproteomics indicated no major differences in the pathways of energy metabolism between treatments with H<sub>2</sub> and Fe<sup>0</sup>. Highly abundant proteins namely periplasmic hydrogenases and c-cytochromes associated with H<sub>2</sub>-mediated electron transfer coupled to dissimilatory sulfate reduction indicated this mechanism to be dominant (except for a few putative outer membrane proteins identified with Fe<sup>0</sup>). In conclusion, using a multiphasic approach including metaproteomics to elucidate metabolic pathways improved the overall understanding of microbial processes associated with freshwater MIC.</div></div>","PeriodicalId":13643,"journal":{"name":"International Biodeterioration & Biodegradation","volume":"198 ","pages":"Article 105995"},"PeriodicalIF":4.1,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143165387","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
What is missing in a manuscript?
IF 4.1 2区 环境科学与生态学
International Biodeterioration & Biodegradation Pub Date : 2025-02-01 DOI: 10.1016/j.ibiod.2025.106012
Ji-Dong Gu
{"title":"What is missing in a manuscript?","authors":"Ji-Dong Gu","doi":"10.1016/j.ibiod.2025.106012","DOIUrl":"10.1016/j.ibiod.2025.106012","url":null,"abstract":"<div><div>As academic publication becomes increasingly more competitive for both authors and also the publishers, quality of a manuscript is the most critical element for acceptance through the intensive reviewing process. Manuscripts are increasing in number, but fewer are distinguished from the enormous large pool of them. It is logical for authors to ask what is needed or missing in a manuscript for a good quality to be judged by professional peers? Very briefly, the reproducibility of the results is the basic element and foundation stone for science, and, more importantly, the soul of a manuscript, more than often, is missing. Because of this, I would like to discuss contents of a manuscript in this communication as my focal point in a hope to assist authors to improve manuscript quality and submission success rate.</div></div>","PeriodicalId":13643,"journal":{"name":"International Biodeterioration & Biodegradation","volume":"198 ","pages":"Article 106012"},"PeriodicalIF":4.1,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143376526","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Bridging the link between microbial biofilm and biodeterioration in cultural heritage research
IF 4.1 2区 环境科学与生态学
International Biodeterioration & Biodegradation Pub Date : 2025-02-01 DOI: 10.1016/j.ibiod.2025.106001
Ling Luo , Ji-Dong Gu
{"title":"Bridging the link between microbial biofilm and biodeterioration in cultural heritage research","authors":"Ling Luo ,&nbsp;Ji-Dong Gu","doi":"10.1016/j.ibiod.2025.106001","DOIUrl":"10.1016/j.ibiod.2025.106001","url":null,"abstract":"<div><div>Cultural heritage research has taken advantage of new techniques recently, specifically -omics, which have a huge impact on the ways scientific research conducted and knowledge obtained on cultural heritage for management and protection. High-throughput sequencing (HTS) technology has advanced our understanding of the complex microbial world in terms of the community composition and diversity in great depth to pave a good foundation knowledge. However, at the same time, the mechanism or specific biochemical reactions responsible for the destruction of heritage has not been identified and, more importantly, confirmed to a large extent or on a solid ground. Majority of the reports assume or take statistical correlation as evidence for conclusion on the biodeterioration taking place. Because of this, research on cultural heritage must embrace the critical opportunities to expand the research practice currently adopted with additional and innovative methods so that the biochemical and (eco)physiological functions of the specific microbes can be identified and substantiated for establishment of the supporting results of physical and chemical sciences to advance our knowledge base and the research framework or structure. A new and improved research paradigm is required to make significant progress on the research efforts to understand biodeterioration of cultural heritage and also for the protection and management.</div></div>","PeriodicalId":13643,"journal":{"name":"International Biodeterioration & Biodegradation","volume":"198 ","pages":"Article 106001"},"PeriodicalIF":4.1,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143376540","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Co-biodegradation of cyanide and phenol by Alcaligenes faecalis JF101: Investigating interaction effects
IF 4.1 2区 环境科学与生态学
International Biodeterioration & Biodegradation Pub Date : 2025-02-01 DOI: 10.1016/j.ibiod.2024.105996
Qingyun Li , Shaohui Yan , Zhengfeng Jiang , Liang Xian , Jianjia Du , Haibo Liu , Youyan Liu
{"title":"Co-biodegradation of cyanide and phenol by Alcaligenes faecalis JF101: Investigating interaction effects","authors":"Qingyun Li ,&nbsp;Shaohui Yan ,&nbsp;Zhengfeng Jiang ,&nbsp;Liang Xian ,&nbsp;Jianjia Du ,&nbsp;Haibo Liu ,&nbsp;Youyan Liu","doi":"10.1016/j.ibiod.2024.105996","DOIUrl":"10.1016/j.ibiod.2024.105996","url":null,"abstract":"<div><div>Cyanide and phenol are highly toxic chemicals that exert severe inhibitory effects on microorganisms, posing significant challenges for their removal by biological methods in coexistent systems. In this study, we successfully isolated a bacterial strain named JF101, identified as <em>Alcaligenes faecalis</em>, which was capable of degrading both cyanide and phenol. The interactions between cyanide and phenol during biodegradation were investigated. It was found that the presence of 100 mg/L cyanide significantly enhanced the degradation of phenol, leading to the complete degradation of 1000 mg/L phenol within 86 h. In contrast, only 21.9% of phenol was degraded in the absence of cyanide. Additionally, the presence of phenol had minimal impact on cyanide degradation; a concentration of 100 mg/L cyanide could be rapidly and completely degraded within 40 min even in the presence of up to 1000 mg/L phenol. Five empirical kinetic models of Haldane, Aiba, Edward, Yano, and Webb were employed to describe the degradation processes of phenol and cyanide in both single-substrate and dual-substrate systems. The putative degrading enzymes, degradation products, and pathways associated with the co-degradation of cyanide and phenol were systematically analyzed. The formamide and NH<sub>4</sub><sup>+</sup>-N produced from the rapid degradation of cyanide served as nitrogen sources, facilitating the resumed growth of strain JF101 and enhancing phenol degradation.</div></div>","PeriodicalId":13643,"journal":{"name":"International Biodeterioration & Biodegradation","volume":"198 ","pages":"Article 105996"},"PeriodicalIF":4.1,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143164795","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Ammonia nitrogen degrading characteristics by the novel strain Alcaligenes sp. TD-94 and regulation mechanism of POD gene
IF 4.1 2区 环境科学与生态学
International Biodeterioration & Biodegradation Pub Date : 2025-02-01 DOI: 10.1016/j.ibiod.2025.106002
Meimei Wan, Peiyang Zheng, Yang Liu, Ying Lei, Yuanyuan Dong, Zhiqiang Cai
{"title":"Ammonia nitrogen degrading characteristics by the novel strain Alcaligenes sp. TD-94 and regulation mechanism of POD gene","authors":"Meimei Wan,&nbsp;Peiyang Zheng,&nbsp;Yang Liu,&nbsp;Ying Lei,&nbsp;Yuanyuan Dong,&nbsp;Zhiqiang Cai","doi":"10.1016/j.ibiod.2025.106002","DOIUrl":"10.1016/j.ibiod.2025.106002","url":null,"abstract":"<div><div>Heterotrophic nitrification-aerobic denitrification bacteria have attracted more and more attention due to their high tolerance to ammonia nitrogen, efficient nitrogen removal capacity, and strong pH adaptability. This experiment studied the optimal conditions for the degradation of ammonia nitrogen by the heterotrophic nitrification-aerobic denitrification strain <em>Alcaligenes</em> sp. TD-94. Based on gene identification results, the metabolic pathway of TD-94 for degrading ammonia nitrogen was inferred. The key enzyme pyruvic oxime dioxygenase (<em>POD</em>) in the heterotrophic nitrification process was purified, and its catalytic properties were studied. The results showed that the denitrification performance of <em>Alcaligenes</em> sp. TD-94 was optimal when the carbon source was sodium acetate, the C/N ratio was 10, the pH was 7.0, the inoculation amount was 10%, and the temperature was 28–37 °C. The pathway of strain TD-94 is NH<sub>4</sub><sup>+</sup> - NH<sub>2</sub>OH - NO<sub>2</sub><sup>−</sup> - NO - N<sub>2</sub>O - N<sub>2</sub>. In the experiment, <em>POD</em> was successfully expressed at 28 °C. After purification, it remained stably expressed, and enzymatic reaction verification showed good nitrite generation. The protein structure of <em>POD</em> was predicted, and it was highly similar to the known aldolase structure in the PBD database, and the predicted amino acid sequence of POD from positions 32 to 210 was detected as the aldolase domain.</div></div>","PeriodicalId":13643,"journal":{"name":"International Biodeterioration & Biodegradation","volume":"198 ","pages":"Article 106002"},"PeriodicalIF":4.1,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143165382","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Luffa cylindrica-based immobilization: Effects on metabolic activity and paracetamol degradation by Pseudomonas moorei KB4
IF 4.1 2区 环境科学与生态学
International Biodeterioration & Biodegradation Pub Date : 2025-02-01 DOI: 10.1016/j.ibiod.2025.106007
Urszula Guzik , Anna Dzionek , Agnieszka Nowak , Ariel Marchlewicz , Katarzyna Hupert-Kocurek , Daria Szada , Teofil Jesionowski , Jacek Borgulat , Łukasz Jałowiecki , Grażyna Płaza , Danuta Wojcieszyńska
{"title":"Luffa cylindrica-based immobilization: Effects on metabolic activity and paracetamol degradation by Pseudomonas moorei KB4","authors":"Urszula Guzik ,&nbsp;Anna Dzionek ,&nbsp;Agnieszka Nowak ,&nbsp;Ariel Marchlewicz ,&nbsp;Katarzyna Hupert-Kocurek ,&nbsp;Daria Szada ,&nbsp;Teofil Jesionowski ,&nbsp;Jacek Borgulat ,&nbsp;Łukasz Jałowiecki ,&nbsp;Grażyna Płaza ,&nbsp;Danuta Wojcieszyńska","doi":"10.1016/j.ibiod.2025.106007","DOIUrl":"10.1016/j.ibiod.2025.106007","url":null,"abstract":"<div><div><em>Pseudomonas moorei</em> KB4 belongs to the paracetamol-degrading strains. This strain was immobilized on a biodegradable carrier – a cellulose sponge from <em>Luffa cylindrica</em>. The study aimed to determine the impact of the immobilization process on the metabolic activity of the strain, including the biodegradation process of paracetamol. The research that was conducted showed significant differences in the level of transcription of selected genes, as well as in the metabolic profile and the composition of total fatty acids. However, the immobilization process did not significantly affect the degradation of paracetamol. This indicates a lack of limitation in the availability of the substrate, which is not very toxic to the tested strain. However, immobilization causes greater strain resistance to the appearance of the toxic 4-aminophenol. After immobilization, it is possible to decompose higher concentrations of paracetamol, which, under normal conditions, leads to the accumulation of 4-aminophenol, inhibiting the free strain's growth. Differences in the degradation of this drug by free and immobilized cells, depending on the number of doses, were observed. After analyzing the enzymes and intermediates of the paracetamol degradation pathway, differences were shown between the metabolism of this compound by the free and immobilized strain. It was shown that, 3-methyl-3-vinyl-cyclohexanon was a characteristic intermediate identified only during paracetamol degradation by the free strain of KB4. Moreover, no deaminase and hydroquinone 1,2-dioxygenase were active in the system with immobilized KB4. The resulting hydroquinone ring was probably not cleaved in the immobilized system. Hence, decomposition probably proceeds by catechol cleavage.</div></div>","PeriodicalId":13643,"journal":{"name":"International Biodeterioration & Biodegradation","volume":"198 ","pages":"Article 106007"},"PeriodicalIF":4.1,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143165384","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The chemolithoautotrophic bacterium CB1MN can utilize hydrogen and sulfur as electron donors with ferric iron as electron acceptor
IF 4.1 2区 环境科学与生态学
International Biodeterioration & Biodegradation Pub Date : 2025-02-01 DOI: 10.1016/j.ibiod.2024.105988
Haikun Zhang , Lisa Voskuhl , Mohamed Hassoun , Verena S. Brauer , Astrid Dannehl , Yassin M. Kaspareit , Hermann J. Heipieper , Rainer U. Meckenstock
{"title":"The chemolithoautotrophic bacterium CB1MN can utilize hydrogen and sulfur as electron donors with ferric iron as electron acceptor","authors":"Haikun Zhang ,&nbsp;Lisa Voskuhl ,&nbsp;Mohamed Hassoun ,&nbsp;Verena S. Brauer ,&nbsp;Astrid Dannehl ,&nbsp;Yassin M. Kaspareit ,&nbsp;Hermann J. Heipieper ,&nbsp;Rainer U. Meckenstock","doi":"10.1016/j.ibiod.2024.105988","DOIUrl":"10.1016/j.ibiod.2024.105988","url":null,"abstract":"<div><div>Microbially mediated redox processes of sulfur compounds are closely related to the occurrence of iron oxides in natural ecosystems. However, so far, no pure culture has been reported to couple sulfur oxidation to iron reduction under neutral or alkaline conditions. Here, we report on a pure culture of a sulfur-oxidizing and iron-reducing bacterium (strain CB1MN) and demonstrate that hydrogen can be used as an electron donor supporting the growth of strain CB1MN with ferrihydrite as electron acceptor. The reduction of ferrihydrite by CB1MN produced dissolved Fe(II) and secondary minerals, which was confirmed by Raman analysis. In addition, strain CB1MN can also utilize a few organic carbon and electron sources such as glucose, pyruvate, acetate, and succinate for maintaining growth and metabolic activity with sulfite as electron acceptor. Genomic analysis showed that a membrane-bound Hyd-4-type hydrogenase and a cytoplasmic F420-non-reducing hydrogenase should be responsible for the hydrogen oxidation. Furthermore, a large number of genes encoding type IV pili and flagella were suspected to be involved in electron transport. Our results imply that the sulfur- and iron-utilizing chemoautotrophs not only use sulfur compounds for energy conservation, but hydrogen and organic carbon sources can be electron donors.</div></div>","PeriodicalId":13643,"journal":{"name":"International Biodeterioration & Biodegradation","volume":"198 ","pages":"Article 105988"},"PeriodicalIF":4.1,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143165385","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Characteristic study of Pb2+ binding to extracellular polymeric substances from Staphylococcus epidermidis G257
IF 4.1 2区 环境科学与生态学
International Biodeterioration & Biodegradation Pub Date : 2025-02-01 DOI: 10.1016/j.ibiod.2025.106004
Yinyan Chen , Zhijia Fang , Yongbin Li , Qi Deng , Lijun Sun , Jianmeng Liao , Ravi Gooneratne
{"title":"Characteristic study of Pb2+ binding to extracellular polymeric substances from Staphylococcus epidermidis G257","authors":"Yinyan Chen ,&nbsp;Zhijia Fang ,&nbsp;Yongbin Li ,&nbsp;Qi Deng ,&nbsp;Lijun Sun ,&nbsp;Jianmeng Liao ,&nbsp;Ravi Gooneratne","doi":"10.1016/j.ibiod.2025.106004","DOIUrl":"10.1016/j.ibiod.2025.106004","url":null,"abstract":"<div><div>As an important toxic pollutant, lead (Pb<sup>2+</sup>) seriously threatens the environment and human well-being. Microbes and microbial extracellular polymeric substances (EPS) are highly effective at removing heavy metals from solutions. Herein, a Pb<sup>2+</sup>-tolerant strain, <em>Staphylococcus epidermidis</em> G257 was isolated from Guangxi of China. The strain showed strong resistance to Pb<sup>2+</sup> and great Pb<sup>2+</sup> adsorbability. The biosorption processes of <em>S. epidermidis</em> G257 and its EPS were characterized using microscopical techniques, ICP-MS, zeta potential measurement, XRD, FTIR, 3D-EEM, and XPS spectroscopy. Results showed that <em>S. epidermidis</em> G257 were effective in adsorbing Pb<sup>2+</sup>, with a biosorption efficiency of 81%. The biosorption process of Pb<sup>2+</sup> was described well by the pseudo-second-order model with an adsorption capacity of 53.52 mg/g. Microscopical analyses showed that Pb<sup>2+</sup> was adsorbed on the <em>S. epidermidis</em> surface by forming EPS precipitates. The variations in zeta potential indicated an electrostatic attraction in the Pb<sup>2+</sup> adsorption process. Moreover, FTIR, 3D-EEM and XPS analyses revealed that the functional groups participating in Pb<sup>2+</sup> adsorption were primarily carbonyl, carboxyl and amino groups of proteins in the EPS, which greatly facilitated Pb<sup>2+</sup> adsorption by forming EPS-metal complexes. Therefore, this study unveiled that <em>S. epidermidis</em> G257 can be utilized as a potential biosorbent for eliminating Pb<sup>2+</sup> from polluted environment.</div></div>","PeriodicalId":13643,"journal":{"name":"International Biodeterioration & Biodegradation","volume":"198 ","pages":"Article 106004"},"PeriodicalIF":4.1,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143165459","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Unveiling the catabolic biodegradation of pymetrozine in Pseudomonas guariconensis strain BYT-5 through genomics studies
IF 4.1 2区 环境科学与生态学
International Biodeterioration & Biodegradation Pub Date : 2025-02-01 DOI: 10.1016/j.ibiod.2024.105991
Mingliang Zhang, Yali Liu, Qian Li, Qian Zhu, Junqiang Hu, Mingli Jiang, Xin Yan, Qing Hong, Jiguo Qiu
{"title":"Unveiling the catabolic biodegradation of pymetrozine in Pseudomonas guariconensis strain BYT-5 through genomics studies","authors":"Mingliang Zhang,&nbsp;Yali Liu,&nbsp;Qian Li,&nbsp;Qian Zhu,&nbsp;Junqiang Hu,&nbsp;Mingli Jiang,&nbsp;Xin Yan,&nbsp;Qing Hong,&nbsp;Jiguo Qiu","doi":"10.1016/j.ibiod.2024.105991","DOIUrl":"10.1016/j.ibiod.2024.105991","url":null,"abstract":"<div><div>Pymetrozine boosts crop yields by managing insect pests, but the United States Environmental Protection Agency (USEPA) has labeled it a potential carcinogen for its detrimental effects on human reproduction and respiratory health. In this study, <em>Pseudomonas guariconensis</em> strain BYT-5, capable of degrading pymetrozine via a typical metabolic pathway as its sole carbon source for growth, was isolated. Genome sequencing and analysis of strain BYT-5 revealed the presence of the pymetrozine hydrolase gene <em>pyzH</em> and two nicotinic acid (NA) catabolic gene clusters, <em>nic1</em> (<em>nicAB1R1X1C1D1E1F1T1</em>) and <em>nic2</em> (<em>nicR2X2C2D2E2F2T2B2</em>). Verification of these genes was achieved through heterologous expression, gene knockout, and complementation assays. The gene <em>pyzH</em> initiated the breakdown of pymetrozine into 4-amino-6-methyl-4,5-dihydro-2<em>H</em>-[1,2,4]triazin-3-one (AMDT) and nicotinaldehyde, which was further oxidized to nicotinic acid (NA) by non-specific dehydrogenases. The genes <em>nicAB1</em>, <em>nicC2</em>, and <em>nicX1</em> sequentially converted NA into 6-hydroxynicotinic acid (6HNA), 2,5-dihydroxypyridine (2,5-DHP), and <em>N</em>-formylmaleamic acid (NFM), respectively. The genes <em>nicD2E2F2</em> was ultimately responsible for converting NFM to fumaric acid, entering the TCA cycle. Furthermore, the presence of diverse transposases around the <em>pyzH</em>, <em>nic1</em>, and <em>nic2</em> clusters may facilitate BYT-5's acquisition of genes necessary for pymetrozine degradation. This study elucidates the molecular metabolic mechanism of pymetrozine at the molecular level.</div></div>","PeriodicalId":13643,"journal":{"name":"International Biodeterioration & Biodegradation","volume":"198 ","pages":"Article 105991"},"PeriodicalIF":4.1,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143164774","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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