Indian Journal of Medical Microbiology最新文献

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A case report and literature review of nontuberculous mycobacterial disease caused by Mycolicibacter kumamotonensis 由库马莫托分枝杆菌引起的非结核分枝杆菌病病例报告和文献综述
IF 1.4 4区 医学
Indian Journal of Medical Microbiology Pub Date : 2024-09-12 DOI: 10.1016/j.ijmmb.2024.100731
Ayano Watanabe , Takehisa Sano , Kenta Murayama , Ryota Miyamoto , Junya Kamei , Toshihiro Masuda , Suguru Kojima , Kyoko Hijiya , Masato Fujii
{"title":"A case report and literature review of nontuberculous mycobacterial disease caused by Mycolicibacter kumamotonensis","authors":"Ayano Watanabe ,&nbsp;Takehisa Sano ,&nbsp;Kenta Murayama ,&nbsp;Ryota Miyamoto ,&nbsp;Junya Kamei ,&nbsp;Toshihiro Masuda ,&nbsp;Suguru Kojima ,&nbsp;Kyoko Hijiya ,&nbsp;Masato Fujii","doi":"10.1016/j.ijmmb.2024.100731","DOIUrl":"10.1016/j.ijmmb.2024.100731","url":null,"abstract":"<div><p>Herein, we report a rare case of pulmonary nontuberculous mycobacterial (NTM) infection caused by <em>Mycolicibacter kumamotonensis</em> in a 73-year-old man successfully treated with clarithromycin, rifampicin, and ethambutol. Seven cases of NTM disease caused by <em>M. kumamotonensis</em> have been previously described, with characteristics differing from those of more common NTM diseases.</p></div>","PeriodicalId":13284,"journal":{"name":"Indian Journal of Medical Microbiology","volume":null,"pages":null},"PeriodicalIF":1.4,"publicationDate":"2024-09-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142172603","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Next generation sequencing to detect pathogens causing paediatric community-acquired pneumonia - A systematic review and meta-analysis 下一代测序检测导致儿科社区获得性肺炎的病原体--系统综述和元分析。
IF 1.4 4区 医学
Indian Journal of Medical Microbiology Pub Date : 2024-09-11 DOI: 10.1016/j.ijmmb.2024.100730
Kiran Chawla , Rosemary Shaji , Nayana Siddalingaiah , Sreenath Menon P K , Sangeetha M D , Leslie Edward S. Lewis , Sharath Burugina Nagaraja
{"title":"Next generation sequencing to detect pathogens causing paediatric community-acquired pneumonia - A systematic review and meta-analysis","authors":"Kiran Chawla ,&nbsp;Rosemary Shaji ,&nbsp;Nayana Siddalingaiah ,&nbsp;Sreenath Menon P K ,&nbsp;Sangeetha M D ,&nbsp;Leslie Edward S. Lewis ,&nbsp;Sharath Burugina Nagaraja","doi":"10.1016/j.ijmmb.2024.100730","DOIUrl":"10.1016/j.ijmmb.2024.100730","url":null,"abstract":"<div><h3>Background</h3><p>Paediatric community-acquired pneumonia (CAP) is a major public health challenge in children, requiring accurate and timely diagnosis of causative pathogens for effective antibiotic treatment. We aimed to explore the utility of next-generation sequencing (NGS) in precise diagnosis of pediatric CAP and its effect on treatment outcome of these children.</p></div><div><h3>Methods</h3><p>A systematic review and meta-analysis was conducted to compare NGS-guided antibiotic therapy with conventional methods in pediatric CAP. The study followed PRISMA guidelines and searched for electronic databases including PubMed/MEDLINE, Embase, Scopus, and Web of Sciences from 2012 to 2023. Studies on pediatric CAP (&lt;18 years) using NGS alongside conventional diagnostics, were included.</p></div><div><h3>Results</h3><p>Database search identified 721 studies and 6 were finally included for review, published between 2019 and 2023. Meta-analysis revealed an overall odds ratio of 2.39 (95 % CI 1.22, 3.56) for NGS vs conventional methods. Detection rates using NGS ranged from 86% to 100 %, surpassing conventional methods (26%–78.51 %). Five out of selected 6 studies (83.33 %) have documented that change in treatment based on NGS finding resulted in clinical improvement of patients. There was no significant heterogeneity and potential bias among the studies. Nearly 80 % of the studies were of good quality.</p></div><div><h3>Conclusion</h3><p>The NGS (particularly metagenomic sequencing) is a promising tool for diagnosing paediatric CAP with high accuracy. It can improve antibiotic usage practices and patient outcomes, potentially reducing antibiotic resistance. Based on meta-analysis, training of healthcare professionals in NGS methodologies and result interpretation is highly recommended.</p></div>","PeriodicalId":13284,"journal":{"name":"Indian Journal of Medical Microbiology","volume":null,"pages":null},"PeriodicalIF":1.4,"publicationDate":"2024-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S0255085724002056/pdfft?md5=8166ddfa0c0d3241bf88c2a59b15d5ef&pid=1-s2.0-S0255085724002056-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142132605","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The burden of tuberculosis among patients with non-small cell lung carcinoma in a tertiary care center 一家三级医疗中心非小细胞肺癌患者的结核病负担。
IF 1.4 4区 医学
Indian Journal of Medical Microbiology Pub Date : 2024-09-05 DOI: 10.1016/j.ijmmb.2024.100729
Niranjan Mahishi , Kiran Bala , Prabhat Malik , Piyush Ranjan , Arvind Kumar , Manish Soneja , Anant Mohan , Urvashi B. Singh
{"title":"The burden of tuberculosis among patients with non-small cell lung carcinoma in a tertiary care center","authors":"Niranjan Mahishi ,&nbsp;Kiran Bala ,&nbsp;Prabhat Malik ,&nbsp;Piyush Ranjan ,&nbsp;Arvind Kumar ,&nbsp;Manish Soneja ,&nbsp;Anant Mohan ,&nbsp;Urvashi B. Singh","doi":"10.1016/j.ijmmb.2024.100729","DOIUrl":"10.1016/j.ijmmb.2024.100729","url":null,"abstract":"<div><h3>Background</h3><p>Lung cancer and tuberculosis share similar risk factors, clinical spectrum, radiological features and it is difficult to differentiate but it is important to diagnose both conditions for targeted therapy and better outcome.</p></div><div><h3>Aims</h3><p>Our primary objective was to estimate the proportion of TB in primary biopsy proven non-small cell lung carcinoma (NSCLC) cases.</p></div><div><h3>Material &amp; methods</h3><p>This prospective observational study was conducted in the Departments of Medicine/Pulmonary Medicine/Medical Oncology and Microbiology at the All India Institute of Medical Sciences, New Delhi for a period of 2 years (January 2020–December 2021). Patients with biopsy proven, primary non-small cell lung cancer were recruited and sputum samples were subjected to microbiological investigations to confirm tuberculosis. Comparison was done in two groups of lung cancer patients with confirmed TB (Group A) and without confirmed tuberculosis (Group B).</p></div><div><h3>Results</h3><p>Total 75 patients with biopsy proven, primary NSCLC were recruited and 16 % (12/75) were diagnosed with confirmed TB. Adenocarcinoma (36.48 %) and Squamous cell carcinoma (33.44 %) were the two predominant histopathological subtypes of NSCLC. About 57 (76 %) of them were found to be in stage IV of Lung cancer at initial presentation itself (75 % in group A &amp; 74.6 % in group B; p value &lt; 0.80). A majority of patients (11/12 cases; 91 %) of group A were males with a mean age of 59 ± 7.5 years. The upper lobes of the lung were involved in 65 % (49/75) of the cases and showing a mass lesion on imaging (75 % in group A &amp; 65 % in group B; p value &lt; 0.52). Kaplan Meier survival revealed a median survival time of 11 months in subjects with only NSCLC and a median survival time of 4 months in the group with concomitant TB and NSCLC (p value &lt; 0.44).</p></div>","PeriodicalId":13284,"journal":{"name":"Indian Journal of Medical Microbiology","volume":null,"pages":null},"PeriodicalIF":1.4,"publicationDate":"2024-09-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142119700","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Carbapenem resistance in Enterobacterales: Predicting clinical outcomes in bloodstream infections 肠杆菌的碳青霉烯耐药性:预测血流感染的临床结果。
IF 1.4 4区 医学
Indian Journal of Medical Microbiology Pub Date : 2024-09-04 DOI: 10.1016/j.ijmmb.2024.100728
Amani Alnimr
{"title":"Carbapenem resistance in Enterobacterales: Predicting clinical outcomes in bloodstream infections","authors":"Amani Alnimr","doi":"10.1016/j.ijmmb.2024.100728","DOIUrl":"10.1016/j.ijmmb.2024.100728","url":null,"abstract":"<div><h3>Purpose</h3><p>Carbapenem-resistant Enterobacterales (CRE) are a global concern due to their high mortality rates and limited therapeutics. CRE-caused bloodstream infections (BSIs) are challenging to manage, especially in healthcare settings. This study aimed to investigate the predictors of mortality in BSI patients caused by CRE.</p></div><div><h3>Methods</h3><p>A single center prospective study to examine the characteristics of BSI caused by CRE in a large academic hospital over 15 months. The main outcomes were microbiological characteristics and clinical outcomes of patients at 28 days based on a step-wise regression analysis.</p></div><div><h3>Results</h3><p>A total of 76 episodes of BSI due to CRE were included. The study found that the most common type of carbapenemase was OXA-48 (69.7 %, n = 53), followed by the co-existence of OXA-48 and MBL (26.3 %, n = 20), with <em>Klebsiella pneumoniae</em> being the most common (90 %, n = 69). Patients with OXA-48-BSI were more likely to have a urinary source of infection, while patients with MBL-BSI were more likely to have a non-urinary source of infection. All cases (100 %) had medical devices. Around 30.3 % of patients received effective empirical treatment, while 61.8 % received adequate therapy at 48 h. The overall mortality rate was 42.1 % (n = 32), and the main predictors of mortality in this study were the presence of sepsis and inadequate initial therapy, while age &gt;65 predicted mortality in the linear regression but not the stepwise regression model.</p></div><div><h3>Conclusion</h3><p>CRE-BSIs are a serious health threat. The study highlights the need for preventive strategies focused on high-risk patients and proper device management to reduce BSI.</p></div>","PeriodicalId":13284,"journal":{"name":"Indian Journal of Medical Microbiology","volume":null,"pages":null},"PeriodicalIF":1.4,"publicationDate":"2024-09-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142106968","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Aims and Scope 目标和范围
IF 1.4 4区 医学
Indian Journal of Medical Microbiology Pub Date : 2024-09-01 DOI: 10.1016/S0255-0857(24)00190-7
{"title":"Aims and Scope","authors":"","doi":"10.1016/S0255-0857(24)00190-7","DOIUrl":"10.1016/S0255-0857(24)00190-7","url":null,"abstract":"","PeriodicalId":13284,"journal":{"name":"Indian Journal of Medical Microbiology","volume":null,"pages":null},"PeriodicalIF":1.4,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142320061","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Development and validation of a pentaplex PCR assay for rapid detection of blaCTX-M, blaOXA–1, blaCMY, blaNDM and the PBP3 insert in Enterobacterales 开发并验证用于快速检测肠杆菌中 blaCTX-M、blaOXA-1、blaCMY、blaNDM 和 PBP3 插入物的五重 PCR 法。
IF 1.4 4区 医学
Indian Journal of Medical Microbiology Pub Date : 2024-08-30 DOI: 10.1016/j.ijmmb.2024.100710
Yamuna Devi Bakthavatchalam , Fizaa Abdullah , Devishree Srinivasan , Sangeetha Nithiyanandam , Ayyanraj Neeravi , Poojah Shah , Nivedhana Subburaju , Subha Vajjiravelu Jaganathan , Rema Devi , Gita Nataraj , Binesh Lal Yesudason , Kamini Walia , Balaji Veeraraghavan
{"title":"Development and validation of a pentaplex PCR assay for rapid detection of blaCTX-M, blaOXA–1, blaCMY, blaNDM and the PBP3 insert in Enterobacterales","authors":"Yamuna Devi Bakthavatchalam ,&nbsp;Fizaa Abdullah ,&nbsp;Devishree Srinivasan ,&nbsp;Sangeetha Nithiyanandam ,&nbsp;Ayyanraj Neeravi ,&nbsp;Poojah Shah ,&nbsp;Nivedhana Subburaju ,&nbsp;Subha Vajjiravelu Jaganathan ,&nbsp;Rema Devi ,&nbsp;Gita Nataraj ,&nbsp;Binesh Lal Yesudason ,&nbsp;Kamini Walia ,&nbsp;Balaji Veeraraghavan","doi":"10.1016/j.ijmmb.2024.100710","DOIUrl":"10.1016/j.ijmmb.2024.100710","url":null,"abstract":"<div><h3>Background</h3><p>There is a high diversity of beta-lactamases in gram negative pathogens, making them difficult to treat. In the presence of OXA-1 and ampC, PTZ is no longer clinically relevant when treating Enterobacterales expressing ESBLs. Further, MBL infections are often treated with the combination of ceftazidime/avibactam with aztreonam. . It has recently been reported that NDM-expressing <em>E. coli</em> isolates co-harboring PBP3 insert develops resistance to this triple combination.</p></div><div><h3>Methods</h3><p>A pentaplex PCR is developed and validated to simultaneously detect bla<sub>CTX-M</sub>, bla<sub>OXA-1</sub>, bla<sub>CMY</sub>, bla<sub>NDM</sub>, and the PBP3 insert in whole genome sequenced <em>E. coli</em> and <em>K. pneumoniae</em> isolates. In addition, the isolates chosen for pentaplex PCR evaluation were tested for their minimum inhibitory concentrations (MICs) against piperacillin/tazobactam, cefoperazone/sulbactam (C/S), ertapenem, imipenem, meropenem, ceftazidime/avibactam, aztreonam/avibactam, cefepime/taniborbactam, and cefiderocol.</p></div><div><h3>Results</h3><p>The developed pentaplex PCR showed 100 % reproducibility with the antimicrobial resistance profile generated from whole genome sequenced data. PTZ and C/S are not effective against ESBL and/or OXA-1 expressing <em>E. coli</em> and <em>K. pneumoniae</em> isolates and do not offer any activity against CMY co-producers. Further, the combined effect of CMY, NDM and PBP3 inserts impacts aztreonam/avibactam activity and reduces the susceptibility to 40 % in <em>E. coli</em> isolates. While, aztreonam/avibactam showed potent activity against NDM-expressing <em>K. pneumoniae</em> isolates. Importantly, cefepime/taniborbactam and cefiderocol showed limited activity against NDM-expressing <em>E. coli</em> and <em>K. pneumoniae</em> isolates.</p></div><div><h3>Conclusion</h3><p>The pentaplex PCR was effective in detecting four beta-lactamases (bla<sub>CTX-M</sub>, bla<sub>OXA-1</sub>, bla<sub>CMY</sub>, bla<sub>NDM</sub>) as well as PBP3 inserts. It is expected that using pentaplex PCR as a diagnostic test for resistance detection in clinical practice will improve patient outcomes by providing prompt and targeted treatment.</p></div>","PeriodicalId":13284,"journal":{"name":"Indian Journal of Medical Microbiology","volume":null,"pages":null},"PeriodicalIF":1.4,"publicationDate":"2024-08-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142055423","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Breaking new ground: First case of keratitis by Apiospora 开辟新天地:首例 Apiospora 引起的角膜炎。
IF 1.4 4区 医学
Indian Journal of Medical Microbiology Pub Date : 2024-08-29 DOI: 10.1016/j.ijmmb.2024.100711
Diptanu Paul , Bruttendu Moharana , Shraddha B. Sawant , Supriya Sahu , Subhasmita Bahinapati , Madhuchhanda Das , Vinaykumar Hallur
{"title":"Breaking new ground: First case of keratitis by Apiospora","authors":"Diptanu Paul ,&nbsp;Bruttendu Moharana ,&nbsp;Shraddha B. Sawant ,&nbsp;Supriya Sahu ,&nbsp;Subhasmita Bahinapati ,&nbsp;Madhuchhanda Das ,&nbsp;Vinaykumar Hallur","doi":"10.1016/j.ijmmb.2024.100711","DOIUrl":"10.1016/j.ijmmb.2024.100711","url":null,"abstract":"<div><p>Fungi belonging to <em>Apiospora</em> are phytopathogens not reported from human infections. Here, we report a case of keratitis due to <em>Apiospora</em> species in a carpenter who sustained a bamboo shrapnel injury to his eye when he was not wearing safety goggles. Thin hyaline septate hyphae were found on calcofluor white with potassium hydroxide (Calco-KOH) preparation of the scraping. A nonsporulating white mold grew from the corneal scrape, identified as <em>A. rasikravindrae</em> by Internal Transcribed Spacer (ITS) region sequencing. The patient improved with debridement and topical antifungal therapy. Educational interventions are needed to encourage safety goggles to prevent corneal injuries and blindness.</p></div>","PeriodicalId":13284,"journal":{"name":"Indian Journal of Medical Microbiology","volume":null,"pages":null},"PeriodicalIF":1.4,"publicationDate":"2024-08-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142055422","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Diagnostic accuracy of truenat MTB plus for the detection of pulmonary and extrapulmonary tuberculosis truenat MTB plus 检测肺部和肺外结核病的诊断准确性。
IF 1.4 4区 医学
Indian Journal of Medical Microbiology Pub Date : 2024-08-24 DOI: 10.1016/j.ijmmb.2024.100709
Reena Anie Jose , Leeberk Raja Inbaraj , Ria Catherine Vincent , Adhin Baskar , Renu Mathew
{"title":"Diagnostic accuracy of truenat MTB plus for the detection of pulmonary and extrapulmonary tuberculosis","authors":"Reena Anie Jose ,&nbsp;Leeberk Raja Inbaraj ,&nbsp;Ria Catherine Vincent ,&nbsp;Adhin Baskar ,&nbsp;Renu Mathew","doi":"10.1016/j.ijmmb.2024.100709","DOIUrl":"10.1016/j.ijmmb.2024.100709","url":null,"abstract":"<div><h3>Background</h3><p>The diagnosis of Tuberculosis (TB) has been a challenge till the advent of rapid molecular diagnostic tests. The traditional diagnostic tests have its own limitations with regard to its performance or the turnaround time. Truenat MTB Plus assay, a battery-operated molecular assay developed in India has been introduced for its use in pulmonary TB (PTB). However, the diagnostic accuracy of the assay is not well studied in comparison with Mycobacterial culture, especially for extrapulmonary TB (EPTB).</p></div><div><h3>Aim</h3><p>We aimed at evaluating the diagnostic accuracy of Truenat MTB Plus assay for both PTB and EPTB comparing with culture for adult population.</p></div><div><h3>Methods</h3><p>The specimens from presumptive PTB and EPTB patients were processed for Truenat MTB Plus assay, solid or liquid culture and AFB staining. The electronic data of all the specimen reports collected retrospectively were analysed for the sensitivity and specificity.</p></div><div><h3>Results</h3><p>Out of the 736 samples which had valid culture reports, 364 (49.4 %) were respiratory and 372 (50.6 %) were extrapulmonary specimens. The test positivity rate for smear microscopy, Truenat MTB Plus assay and culture was 3.7 % (27), 8.2 % (60), 7.1 % (52) respectively. Of the 60 Truenat MTB Plus positive patients with TB, 33 (55 %) were PTB and 27 (45 %) were EPTB. We estimated overall sensitivity and specificity of Truenat MTB Plus as 90 % (95 % CI: 73.4–97.8) and 98. 2 (95 % CI:96–99.3) respectively for the detection of PTB. The overall sensitivity and specificity for EPTB was 81.8 % (95 % CI: 59.7–94.8) and 97.4 % (95 % CI: 95.1–98.8) respectively.</p></div><div><h3>Conclusions</h3><p>Truenat MTB Plus assay has comparable diagnostic accuracy with other molecular assays. The Truenat MTB Plus assay can be used for the diagnosis of PTB and EPTB, especially in resource limited settings.</p></div>","PeriodicalId":13284,"journal":{"name":"Indian Journal of Medical Microbiology","volume":null,"pages":null},"PeriodicalIF":1.4,"publicationDate":"2024-08-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142046620","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Invasive aspergillosis due to cryptic Aspergillus species: A prospective study from a single centre in India 由隐匿曲霉菌种引起的侵袭性曲霉病:印度一家中心的前瞻性研究。
IF 1.4 4区 医学
Indian Journal of Medical Microbiology Pub Date : 2024-08-23 DOI: 10.1016/j.ijmmb.2024.100708
R. Sruti Janani, Immaculata Xess, Bimal Kumar Das, Saumya Cs, Tamanna Bordoloi, Mragnayani Pandey, Jaweed Ahmed, Gagandeep Singh
{"title":"Invasive aspergillosis due to cryptic Aspergillus species: A prospective study from a single centre in India","authors":"R. Sruti Janani,&nbsp;Immaculata Xess,&nbsp;Bimal Kumar Das,&nbsp;Saumya Cs,&nbsp;Tamanna Bordoloi,&nbsp;Mragnayani Pandey,&nbsp;Jaweed Ahmed,&nbsp;Gagandeep Singh","doi":"10.1016/j.ijmmb.2024.100708","DOIUrl":"10.1016/j.ijmmb.2024.100708","url":null,"abstract":"<div><h3>Background</h3><p><u>&amp; objective</u>: The existence of visually identical cryptic <em>Aspergillus</em> species that can be distinguished only by molecular techniques is becoming more widely acknowledged. For the majority of antifungal drugs, these are known to exhibit a greater minimal inhibitory concentration in vitro. For the purpose of receiving the proper care, it is crucial to identify these species at right time. Our aim in this work is to identify and describe the <em>Aspergillus</em> species that are cryptic from all of the clinical samples.</p></div><div><h3>Methods</h3><p>Routine samples from inpatients and outpatients received in department of Microbiology, All India Institute of Medical Sciences, New Delhi, showing growth of <em>Aspergillus</em> species were included in this study. Phenotypic and Matrix Assisted Laser Desorption Ionisation - Time of Flight identified isolates were analysed for cryptic species, by PCR and ITS/<em>ß</em> – tubulin sequencing. In accordance with CLSI recommendations, antifungal susceptibility testing was conducted using micro broth dilution.</p></div><div><h3>Results</h3><p>Of the 94 isolates, 54 <em>A. fumigatus</em>, 34 <em>A. flavus</em>, 3 <em>A. nidulans</em>, 2 <em>A. terreus,</em> and 1 <em>A. niger</em> were morphologically identified. MALDI-TOF misidentified 2 <em>A. nidulans</em> isolates and 1 <em>A, stellatus</em> isolate. The <em>ß</em> – tubulin sequence analysis revealed that 2 isolates (2.08 %) were cryptic, one was <em>A. stellatus</em> and another one was <em>A. tubingensis</em>.</p></div>","PeriodicalId":13284,"journal":{"name":"Indian Journal of Medical Microbiology","volume":null,"pages":null},"PeriodicalIF":1.4,"publicationDate":"2024-08-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142046621","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Unmasking a looming crisis: Escalating MIC of last resort drugs against MRSA isolates from a tertiary care hospital in Central India "揭开迫在眉睫的危机:印度中部一家三甲医院针对 MRSA 分离物的最后手段药物的 MIC 不断升级"。
IF 1.4 4区 医学
Indian Journal of Medical Microbiology Pub Date : 2024-08-21 DOI: 10.1016/j.ijmmb.2024.100707
Neha S. Bawankar , Gopal N. Agrawal, Sunanda S. Zodpey (Shrikhande)
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