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The Novel HLA-A*68 Allele, HLA-A*68:02:27, Identified by Next Generation Sequencing 新HLA-A*68等位基因HLA-A*68:02:27的下一代测序鉴定
IF 5.9 4区 医学
HLA Pub Date : 2025-05-07 DOI: 10.1111/tan.70226
Bobbie Rhodes-Clark, Christine Redding
{"title":"The Novel HLA-A*68 Allele, HLA-A*68:02:27, Identified by Next Generation Sequencing","authors":"Bobbie Rhodes-Clark,&nbsp;Christine Redding","doi":"10.1111/tan.70226","DOIUrl":"https://doi.org/10.1111/tan.70226","url":null,"abstract":"<div>\u0000 \u0000 <p>HLA-A*68:02:27 differs from HLA-A-68:02:01:01 by a single nucleotide variation in Exon 4, codon 206.</p>\u0000 </div>","PeriodicalId":13172,"journal":{"name":"HLA","volume":"105 5","pages":""},"PeriodicalIF":5.9,"publicationDate":"2025-05-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143914528","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Characterisation of the Novel HLA-A*68:322 Allele by Sequencing-Based Typing 新型HLA-A*68:322等位基因的分型分析
IF 5.9 4区 医学
HLA Pub Date : 2025-05-07 DOI: 10.1111/tan.70230
Thibault Pajot, Vincent Elsermans, Isabelle Top, Myriam Labalette
{"title":"Characterisation of the Novel HLA-A*68:322 Allele by Sequencing-Based Typing","authors":"Thibault Pajot,&nbsp;Vincent Elsermans,&nbsp;Isabelle Top,&nbsp;Myriam Labalette","doi":"10.1111/tan.70230","DOIUrl":"https://doi.org/10.1111/tan.70230","url":null,"abstract":"<div>\u0000 \u0000 <p><i>HLA-A*68:322</i> differs from <i>HLA-A*68:45</i> by three nucleotide changes in exon 2.</p>\u0000 </div>","PeriodicalId":13172,"journal":{"name":"HLA","volume":"105 5","pages":""},"PeriodicalIF":5.9,"publicationDate":"2025-05-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143914536","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Novel HLA-A*26:254 Allele Identified From a Mestizo From Ecuador 厄瓜多尔混血儿HLA-A*26:254等位基因的鉴定
IF 5.9 4区 医学
HLA Pub Date : 2025-05-07 DOI: 10.1111/tan.70182
Malgorzata Kosierb, Veronika Byers, Claire Zheng, Jasmine Ge, S. Yoon Choo
{"title":"The Novel HLA-A*26:254 Allele Identified From a Mestizo From Ecuador","authors":"Malgorzata Kosierb,&nbsp;Veronika Byers,&nbsp;Claire Zheng,&nbsp;Jasmine Ge,&nbsp;S. Yoon Choo","doi":"10.1111/tan.70182","DOIUrl":"https://doi.org/10.1111/tan.70182","url":null,"abstract":"<div>\u0000 \u0000 <p>The novel <i>HLA-A*26:254</i> allele (<i>HLA-A*26:01P</i>) was identified from a healthy mestizo from Ecuador.</p>\u0000 </div>","PeriodicalId":13172,"journal":{"name":"HLA","volume":"105 5","pages":""},"PeriodicalIF":5.9,"publicationDate":"2025-05-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143914537","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Novel HLA-C Allele, HLA-C*01:285Q, With a Modified Start Codon 新的HLA-C等位基因HLA-C*01:28 . 5q，带有一个修改的起始密码子
IF 5.9 4区 医学
HLA Pub Date : 2025-05-06 DOI: 10.1111/tan.70219
Si-Hwan Kim, John Jeongseok Yang, Heung-Bum Oh
{"title":"The Novel HLA-C Allele, HLA-C*01:285Q, With a Modified Start Codon","authors":"Si-Hwan Kim,&nbsp;John Jeongseok Yang,&nbsp;Heung-Bum Oh","doi":"10.1111/tan.70219","DOIUrl":"https://doi.org/10.1111/tan.70219","url":null,"abstract":"<div>\u0000 \u0000 <p>HLA-C*01:285Q differs from HLA-C*01:02:01:01 by a single nucleotide substitution in the start codon.</p>\u0000 </div>","PeriodicalId":13172,"journal":{"name":"HLA","volume":"105 5","pages":""},"PeriodicalIF":5.9,"publicationDate":"2025-05-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143909073","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Novel HLA-DPA1*01:03:01:99 Allele, Discovered for the First Time in a Greek Individual 新的HLA-DPA1*01:03:01:99等位基因，首次在希腊个体中发现
IF 5.9 4区 医学
HLA Pub Date : 2025-05-06 DOI: 10.1111/tan.70240
Petros Mantzios, Vasiliki Kitsiou, Theofilos Athanassiades, Panagiota Mantziou, Alexandra Tsirogianni
{"title":"The Novel HLA-DPA1*01:03:01:99 Allele, Discovered for the First Time in a Greek Individual","authors":"Petros Mantzios,&nbsp;Vasiliki Kitsiou,&nbsp;Theofilos Athanassiades,&nbsp;Panagiota Mantziou,&nbsp;Alexandra Tsirogianni","doi":"10.1111/tan.70240","DOIUrl":"https://doi.org/10.1111/tan.70240","url":null,"abstract":"<div>\u0000 \u0000 <p>The HLA-DPA1*01:03:01:99 allele differs from HLA-DPA1*01:03:01:04 by a single nucleotide substitution in intron 1.</p>\u0000 </div>","PeriodicalId":13172,"journal":{"name":"HLA","volume":"105 5","pages":""},"PeriodicalIF":5.9,"publicationDate":"2025-05-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143908919","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
MultiCook: A Tool That Improves Accuracy of HLA Imputation by Combining Probabilities From Multiple Reference Panels and Methods MultiCook：一种通过结合多个参考面板和方法的概率来提高HLA输入准确性的工具
IF 5.9 4区 医学
HLA Pub Date : 2025-05-06 DOI: 10.1111/tan.70153
Hakin Kim, Hyunjoon Lim, Buhm Han
{"title":"MultiCook: A Tool That Improves Accuracy of HLA Imputation by Combining Probabilities From Multiple Reference Panels and Methods","authors":"Hakin Kim,&nbsp;Hyunjoon Lim,&nbsp;Buhm Han","doi":"10.1111/tan.70153","DOIUrl":"https://doi.org/10.1111/tan.70153","url":null,"abstract":"<div>\u0000 \u0000 <p>HLA molecules are produced by genes within the Major Histocompatibility Complex (MHC). Although the identification of HLA genotype is costly, fortunately, recent computational methods have made it possible to impute HLA genotypes using inexpensive single nucleotide polymorphism (SNP) markers. These imputation methods perform well if ethnicity-matched reference panels are provided. However, the availability of large-sized panels specific to each ethnicity remains limited. As a result, to achieve better imputation for each population, we need to utilise available multiple reference panels together. In this study, we introduce MultiCook, which enables users to simultaneously utilise existing multiple HLA imputation methods with multiple reference panels. MultiCook is versatile in that panels typed with different SNP genotyping platforms can seamlessly be merged, outputs from multiple imputation methods can be combined and the output from the Michigan imputation server with a multiethnic reference panel can also be incorporated. We compared MultiCook to the existing single-reference-panel approaches and the Michigan HLA imputation server. In evaluation with a cohort of 413 Koreans, MultiCook reduced the imputation error rate by about one third, from 4.70% to 3.31%, by combining 1KG EAS (<i>N</i> = 504) and HAN Chinese (<i>N</i> = 9773) reference panels compared to the single-panel approach. Moreover, MultiCook achieved better accuracy for imputing low-frequency alleles in evaluation benchmarks.</p>\u0000 </div>","PeriodicalId":13172,"journal":{"name":"HLA","volume":"105 5","pages":""},"PeriodicalIF":5.9,"publicationDate":"2025-05-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/tan.70153","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143909347","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Identification of the Novel HLA-A*31:239 Allele by Next-Generation Sequencing HLA-A* 31:39等位基因的新一代测序鉴定
IF 5.9 4区 医学
HLA Pub Date : 2025-05-06 DOI: 10.1111/tan.70218
Zechang Shi, Bin Xi, Jianing Yuan, Xin Li, Mingrui Huo
{"title":"Identification of the Novel HLA-A*31:239 Allele by Next-Generation Sequencing","authors":"Zechang Shi,&nbsp;Bin Xi,&nbsp;Jianing Yuan,&nbsp;Xin Li,&nbsp;Mingrui Huo","doi":"10.1111/tan.70218","DOIUrl":"https://doi.org/10.1111/tan.70218","url":null,"abstract":"<div>\u0000 \u0000 <p>HLA-A*31:239 has a single nucleotide substitution at position 329C&gt;G when compared to the A*31:01:02:01 allele.</p>\u0000 </div>","PeriodicalId":13172,"journal":{"name":"HLA","volume":"105 5","pages":""},"PeriodicalIF":5.9,"publicationDate":"2025-05-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143908920","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Discovery of the HLA-A*29:01:15 Allele, a Variant of HLA-A*29 in a Chinese Individual 中国人HLA-A*29变异HLA-A*29:01:15等位基因的发现
IF 5.9 4区 医学
HLA Pub Date : 2025-05-06 DOI: 10.1111/tan.70212
Lan-Lan Cai, Wen-Xia Xia, Wei Liang, Ying-Pei Zhuo, Yun-Ping Xu
{"title":"Discovery of the HLA-A*29:01:15 Allele, a Variant of HLA-A*29 in a Chinese Individual","authors":"Lan-Lan Cai,&nbsp;Wen-Xia Xia,&nbsp;Wei Liang,&nbsp;Ying-Pei Zhuo,&nbsp;Yun-Ping Xu","doi":"10.1111/tan.70212","DOIUrl":"https://doi.org/10.1111/tan.70212","url":null,"abstract":"<div>\u0000 \u0000 <p>HLA-A*29:01:15 differs from HLA-A*29:01:01:01 by a single nucleotide change in exon 1, 39 C → G (codon −12.3 CTC → CTG).</p>\u0000 </div>","PeriodicalId":13172,"journal":{"name":"HLA","volume":"105 5","pages":""},"PeriodicalIF":5.9,"publicationDate":"2025-05-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143909175","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Foreword from the EFI President Marco Andreani EFI主席Marco Andreani的前言
IF 5.9 4区 医学
HLA Pub Date : 2025-05-05 DOI: 10.1111/tan.70160
{"title":"Foreword from the EFI President Marco Andreani","authors":"","doi":"10.1111/tan.70160","DOIUrl":"https://doi.org/10.1111/tan.70160","url":null,"abstract":"","PeriodicalId":13172,"journal":{"name":"HLA","volume":"105 S1","pages":""},"PeriodicalIF":5.9,"publicationDate":"2025-05-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143905082","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Identification of the Novel HLA-DQB1*04:01:09 Allele Using Nanopore Sequencing 新型HLA-DQB1*04:01:09等位基因的纳米孔测序鉴定
IF 5.9 4区 医学
HLA Pub Date : 2025-05-05 DOI: 10.1111/tan.70205
Wenqian Song, Liying Wang, Shihang Zhou, Xiaohua Liang
{"title":"Identification of the Novel HLA-DQB1*04:01:09 Allele Using Nanopore Sequencing","authors":"Wenqian Song,&nbsp;Liying Wang,&nbsp;Shihang Zhou,&nbsp;Xiaohua Liang","doi":"10.1111/tan.70205","DOIUrl":"https://doi.org/10.1111/tan.70205","url":null,"abstract":"<div>\u0000 \u0000 <p>HLA-DQB1*04:01:09 has one nucleotide substitution compared to HLA-DQB1*04:01:01:03 at position 759 in exon 4.</p>\u0000 </div>","PeriodicalId":13172,"journal":{"name":"HLA","volume":"105 5","pages":""},"PeriodicalIF":5.9,"publicationDate":"2025-05-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143908992","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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