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Confirmation and Extension of 35 HLA Alleles Identified in Donors From the Russian Bone Marrow Registry
IF 5.9 4区 医学
HLA Pub Date : 2024-12-18 DOI: 10.1111/tan.70001
Nadezhda Morozova, Maria Loginova, Igor Paramonov
{"title":"Confirmation and Extension of 35 HLA Alleles Identified in Donors From the Russian Bone Marrow Registry","authors":"Nadezhda Morozova,&nbsp;Maria Loginova,&nbsp;Igor Paramonov","doi":"10.1111/tan.70001","DOIUrl":"10.1111/tan.70001","url":null,"abstract":"<div>\u0000 \u0000 <p>35 allele sequences were confirmed and extended: 12 HLA-A, 9 HLA-B, 6 HLA-C, 2 HLA-DQB1, and 6 HLA-DRB1.</p>\u0000 </div>","PeriodicalId":13172,"journal":{"name":"HLA","volume":"104 6","pages":""},"PeriodicalIF":5.9,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142853870","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Detection of Novel HLA-C*03:694, HLA-C*05:301 and HLA-C*07:1160Q Alleles
IF 5.9 4区 医学
HLA Pub Date : 2024-12-18 DOI: 10.1111/tan.15809
Maria Loginova, Nadezhda Morozova, Igor Paramonov
{"title":"Detection of Novel HLA-C*03:694, HLA-C*05:301 and HLA-C*07:1160Q Alleles","authors":"Maria Loginova,&nbsp;Nadezhda Morozova,&nbsp;Igor Paramonov","doi":"10.1111/tan.15809","DOIUrl":"10.1111/tan.15809","url":null,"abstract":"<div>\u0000 \u0000 <p>The novel HLA-C*03:694, HLA-C*05:301 and HLA-C*07:1160Q alleles were detected during the HLA typing process.</p>\u0000 </div>","PeriodicalId":13172,"journal":{"name":"HLA","volume":"104 6","pages":""},"PeriodicalIF":5.9,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142853873","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Discovery of the Novel HLA-DRB4*01:03:01:21 Allele by Third-Generation HLA-Targeted Sequencing Technology
IF 5.9 4区 医学
HLA Pub Date : 2024-12-18 DOI: 10.1111/tan.70004
Zihang Li, Guangbo Tang, Tingjie Wang, Peng Gao, Pengcheng He
{"title":"Discovery of the Novel HLA-DRB4*01:03:01:21 Allele by Third-Generation HLA-Targeted Sequencing Technology","authors":"Zihang Li,&nbsp;Guangbo Tang,&nbsp;Tingjie Wang,&nbsp;Peng Gao,&nbsp;Pengcheng He","doi":"10.1111/tan.70004","DOIUrl":"10.1111/tan.70004","url":null,"abstract":"<div>\u0000 \u0000 <p><i>HLA-DRB4*01:03:01:21</i> differs from <i>DRB4*01:03:01:11</i> by two nucleotide changes in intron 1 and intron 2.</p>\u0000 </div>","PeriodicalId":13172,"journal":{"name":"HLA","volume":"104 6","pages":""},"PeriodicalIF":5.9,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142853880","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Characterisation of Four Novel HLA-B Alleles From Russian Registry
IF 5.9 4区 医学
HLA Pub Date : 2024-12-18 DOI: 10.1111/tan.15808
Maria Loginova, Daria Smirnova, Igor Paramonov
{"title":"Characterisation of Four Novel HLA-B Alleles From Russian Registry","authors":"Maria Loginova,&nbsp;Daria Smirnova,&nbsp;Igor Paramonov","doi":"10.1111/tan.15808","DOIUrl":"10.1111/tan.15808","url":null,"abstract":"<div>\u0000 \u0000 <p>Four novel HLA-B alleles are described from bone marrow volunteers of Russian Registry.</p>\u0000 </div>","PeriodicalId":13172,"journal":{"name":"HLA","volume":"104 6","pages":""},"PeriodicalIF":5.9,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142853866","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Four Novel HLA-DRB1 Alleles Were Identified by Next-Generation Sequencing
IF 5.9 4区 医学
HLA Pub Date : 2024-12-18 DOI: 10.1111/tan.15807
Maria Loginova, Olga Makhova, Igor Paramonov
{"title":"Four Novel HLA-DRB1 Alleles Were Identified by Next-Generation Sequencing","authors":"Maria Loginova,&nbsp;Olga Makhova,&nbsp;Igor Paramonov","doi":"10.1111/tan.15807","DOIUrl":"10.1111/tan.15807","url":null,"abstract":"<div>\u0000 \u0000 <p>Identification of four novel HLA-DRB1 alleles by next-generation sequencing.</p>\u0000 </div>","PeriodicalId":13172,"journal":{"name":"HLA","volume":"104 6","pages":""},"PeriodicalIF":5.9,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142853922","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Novel Allele, HLA-C*06:391, Identified by Next Generation Sequencing in a Saudi Individual
IF 5.9 4区 医学
HLA Pub Date : 2024-12-18 DOI: 10.1111/tan.70007
Dalal AlAbduladheem, Hassan Alharbi, Saber AlZahrani, Amani Mohammed, Mohammad Awaji
{"title":"The Novel Allele, HLA-C*06:391, Identified by Next Generation Sequencing in a Saudi Individual","authors":"Dalal AlAbduladheem,&nbsp;Hassan Alharbi,&nbsp;Saber AlZahrani,&nbsp;Amani Mohammed,&nbsp;Mohammad Awaji","doi":"10.1111/tan.70007","DOIUrl":"10.1111/tan.70007","url":null,"abstract":"<div>\u0000 \u0000 <p>A single nucleotide substitution in exon 2 of <i>HLA-C*06:02:01:01</i> results in the novel allele, <i>HLA-C*06:391</i>.</p>\u0000 </div>","PeriodicalId":13172,"journal":{"name":"HLA","volume":"104 6","pages":""},"PeriodicalIF":5.9,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142853925","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Characterisation of the Novel HLA-G*01:06:01:02 Allele in a Tribal Individual From Western Maharashtra, India
IF 5.9 4区 医学
HLA Pub Date : 2024-12-12 DOI: 10.1111/tan.15805
Yogini Mujumdar, Shramika Vasant Thakur, Vikrant M. Bhor, Ragini Nitin Kulkarni, Itta Krishna Chaaithanya
{"title":"Characterisation of the Novel HLA-G*01:06:01:02 Allele in a Tribal Individual From Western Maharashtra, India","authors":"Yogini Mujumdar,&nbsp;Shramika Vasant Thakur,&nbsp;Vikrant M. Bhor,&nbsp;Ragini Nitin Kulkarni,&nbsp;Itta Krishna Chaaithanya","doi":"10.1111/tan.15805","DOIUrl":"10.1111/tan.15805","url":null,"abstract":"<div>\u0000 \u0000 <p>HLA-G*01:06:02:01 differs from HLA-G*01:06:01:01 by one nucleotide substitution in intron 4 at position 1921 (C to T).</p>\u0000 </div>","PeriodicalId":13172,"journal":{"name":"HLA","volume":"104 6","pages":""},"PeriodicalIF":5.9,"publicationDate":"2024-12-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142813008","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Identification of the Novel HLA-DPA1*02:143 Allele by Next-Generation Sequencing
IF 5.9 4区 医学
HLA Pub Date : 2024-12-12 DOI: 10.1111/tan.15806
Jong Kwon Lee, Sohyeon Eom, Jun Woo Park, Jina Lee, Eun-Suk Kang
{"title":"Identification of the Novel HLA-DPA1*02:143 Allele by Next-Generation Sequencing","authors":"Jong Kwon Lee,&nbsp;Sohyeon Eom,&nbsp;Jun Woo Park,&nbsp;Jina Lee,&nbsp;Eun-Suk Kang","doi":"10.1111/tan.15806","DOIUrl":"10.1111/tan.15806","url":null,"abstract":"<div>\u0000 \u0000 <p><i>HLA-DPA1*02:143</i> is identical to <i>HLA-DPA1*02:02:02:01</i> except for a single nucleotide substitution in exon 1.</p>\u0000 </div>","PeriodicalId":13172,"journal":{"name":"HLA","volume":"104 6","pages":""},"PeriodicalIF":5.9,"publicationDate":"2024-12-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142813015","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Three Fields Allelic Haplotype Frequencies of HLA-DPA1 and -DPB1 Typed by Next Generation Sequencing of 563 Families in Chinese Han Population
IF 5.9 4区 医学
HLA Pub Date : 2024-12-12 DOI: 10.1111/tan.15810
Jian-Ling Wang, Jun-Bo He, Zhi-Min Li, Ya-Nan Zhu, DaJiang Cao, Hong-Lei Fu, Xian Zhang, Marcelo A. Fernández-Viña, Erik Rozemuller, XiangJun Liu
{"title":"Three Fields Allelic Haplotype Frequencies of HLA-DPA1 and -DPB1 Typed by Next Generation Sequencing of 563 Families in Chinese Han Population","authors":"Jian-Ling Wang,&nbsp;Jun-Bo He,&nbsp;Zhi-Min Li,&nbsp;Ya-Nan Zhu,&nbsp;DaJiang Cao,&nbsp;Hong-Lei Fu,&nbsp;Xian Zhang,&nbsp;Marcelo A. Fernández-Viña,&nbsp;Erik Rozemuller,&nbsp;XiangJun Liu","doi":"10.1111/tan.15810","DOIUrl":"https://doi.org/10.1111/tan.15810","url":null,"abstract":"<div>\u0000 \u0000 <p>The present study investigated the <i>HLA-DPA1</i> and <i>-DPB1</i> allele and haplotype frequencies in the Chinese Han population. A total of 563 families, which have been typed for the purpose of haematopoietic stem cell transplantation, were included, and three-field allelic resolution typing of <i>HLA-DPA1</i> and <i>-DPB1</i> of all individuals were defined by the next-generation sequencing method. <i>HLA-DPA1</i>~<i>DPB1</i> haplotypes were determined by allele segregation within a nuclear family. A total of 9 <i>HLA-DPA1</i> and 39 <i>HLA-DPB1</i> alleles, and 62 <i>HLA-DPA1</i>~<i>DPB1</i> haplotypes were identified. The three most frequent alleles at <i>HLA-DPA1</i> locus are <i>HLA-DPA1*02:02:02</i> (46.581%), <i>HLA-DPA1*01:03:01</i> (36.456%) and <i>HLA-DPA1*02:01:01</i> (12.167%); and the three most frequent <i>HLA-DPB1</i> alleles are <i>HLA-DPB1*05:01:01</i> (34.014%), <i>HLA-DPB1*02:01:02</i> (18.428%) and <i>HLA-DPB1*04:01:01</i> (10.124%). The three most frequent haplotypes are <i>HLA-DPA1*02:02:02~DPB1*05:01:01</i> (32.327%), <i>HLA-DPA1*01:03:01 ~ DPB1*02:01:02</i> (14.654%) and <i>HLA-DPA1*01:03:01</i>~<i>DPB1*04:01:01</i> (9.458%). The <i>HLA-DPA1*02:01</i>~<i>DPB1*02:02</i> and <i>HLA-DPA1*04:01</i>~<i>DPB1*05:01</i> haplotypes appear to be unique in Han Chinese. Strong global linkage disequilibrium (LD) between <i>HLA-DPA1</i> and <i>-DPB1</i> was confirmed (<i>D′</i> = 0.848, <i>W</i><sub><i>n</i></sub> <i>=</i> 0.684). Moreover, the haplotype frequencies based on the family study were compared with the frequencies estimated by the expectation–maximisation algorithm, and the equivalent results were obtained except for haplotypes with very low frequencies. Our data provide a solid base for HLA-DP dimer association studies and useful information for transplantation and disease association studies.</p>\u0000 </div>","PeriodicalId":13172,"journal":{"name":"HLA","volume":"104 6","pages":""},"PeriodicalIF":5.9,"publicationDate":"2024-12-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142861210","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Novel HLA-C*03:656 Allele Identified by Next-Generation Sequencing
IF 5.9 4区 医学
HLA Pub Date : 2024-12-12 DOI: 10.1111/tan.15801
Manli Shen, Jo-Ellen Jennemann, Patricia Willey, Chang Liu
{"title":"The Novel HLA-C*03:656 Allele Identified by Next-Generation Sequencing","authors":"Manli Shen,&nbsp;Jo-Ellen Jennemann,&nbsp;Patricia Willey,&nbsp;Chang Liu","doi":"10.1111/tan.15801","DOIUrl":"10.1111/tan.15801","url":null,"abstract":"<div>\u0000 \u0000 <p>HLA-C*03:656 differs from HLA-C*03:04:01:02 by a single missense nucleotide substitution in codon 342 in exon 7.</p>\u0000 </div>","PeriodicalId":13172,"journal":{"name":"HLA","volume":"104 6","pages":""},"PeriodicalIF":5.9,"publicationDate":"2024-12-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142813034","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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