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Draft Genome Sequences of Two Novel Cellulolytic Streptomyces Strains Isolated from South African Rhizosphere Soil. 从南非根际土壤分离的两株新型纤维素降解链霉菌的基因组序列草图。
Genome Announcements Pub Date : 2018-06-28 DOI: 10.1128/genomeA.00632-18
Mobolaji F Adegboye, Briallen Lobb, Olubukola O Babalola, Andrew C Doxey, Kesen Ma
{"title":"Draft Genome Sequences of Two Novel Cellulolytic Streptomyces Strains Isolated from South African Rhizosphere Soil.","authors":"Mobolaji F Adegboye,&nbsp;Briallen Lobb,&nbsp;Olubukola O Babalola,&nbsp;Andrew C Doxey,&nbsp;Kesen Ma","doi":"10.1128/genomeA.00632-18","DOIUrl":"https://doi.org/10.1128/genomeA.00632-18","url":null,"abstract":"<p><p>We report here the draft genome sequences of two novel strains of <i>Streptomyces</i> (NWU339 and NWU49) isolated from South African rhizosphere soils. Both strains were found to possess strong cellulolytic activity and contain numerous putative cellulase genes. Both genomes possess benzoate degradation pathways, while NWU49 contains the genomic potential for enediyne biosynthesis.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00632-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36268471","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
High-Quality Draft Single-Cell Genome Sequence of the NS5 Marine Group from the Coastal Red Sea. 红海沿岸NS5海洋类群单细胞基因组高质量草图
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00565-18
David K Ngugi, Ulrich Stingl
{"title":"High-Quality Draft Single-Cell Genome Sequence of the NS5 Marine Group from the Coastal Red Sea.","authors":"David K Ngugi,&nbsp;Ulrich Stingl","doi":"10.1128/genomeA.00565-18","DOIUrl":"https://doi.org/10.1128/genomeA.00565-18","url":null,"abstract":"<p><p>The uncultured NS5 marine group represents one of the most ubiquitous flavobacterial bacterioplankton associated with marine blooms in the pelagic ocean. Here, we present a single-cell genome sampled from coastal waters in the Red Sea that represents the first high-quality draft genome sequence within the NS5 lineage.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00565-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36245194","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 9
Draft Genome Sequences of Two Basal Members of the Anaerolineae Class of Chloroflexi from a Sulfidic Hot Spring. 硫化物温泉中氯藻厌氧菌科两个基生成员的基因组序列草图。
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00570-18
L M Ward, S E McGlynn, W W Fischer
{"title":"Draft Genome Sequences of Two Basal Members of the <i>Anaerolineae</i> Class of <i>Chloroflexi</i> from a Sulfidic Hot Spring.","authors":"L M Ward,&nbsp;S E McGlynn,&nbsp;W W Fischer","doi":"10.1128/genomeA.00570-18","DOIUrl":"https://doi.org/10.1128/genomeA.00570-18","url":null,"abstract":"<p><p>Here, we describe the first genome sequences of the <i>Anaerolineae</i> from a sulfidic environment, expanding the environmental distribution of sequenced <i>Anaerolineae</i> These genomes represent basal <i>Anaerolineae</i> lineages, branching soon after the divergence of the sister class \"<i>Candidatus</i> Thermofonsia,\" expanding our understanding of the metabolic evolution of this group.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00570-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36245195","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 11
Whole-Genome Sequencing and Annotation of a Drug-Resistant Extrapulmonary Clinical Isolate of Beijing Genotype Mycobacterium tuberculosis from Pune, India. 印度浦那北京基因型结核分枝杆菌肺外临床耐药分离株的全基因组测序和注释。
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00504-18
Swarupa M Hatolkar, Rabindra N Misra, Rajesh Mahato, Savita Jadhav
{"title":"Whole-Genome Sequencing and Annotation of a Drug-Resistant Extrapulmonary Clinical Isolate of Beijing Genotype Mycobacterium tuberculosis from Pune, India.","authors":"Swarupa M Hatolkar,&nbsp;Rabindra N Misra,&nbsp;Rajesh Mahato,&nbsp;Savita Jadhav","doi":"10.1128/genomeA.00504-18","DOIUrl":"https://doi.org/10.1128/genomeA.00504-18","url":null,"abstract":"<p><p>Whole-genome sequencing has emerged as a powerful tool to map genetic diversity among <i>Mycobacterium tuberculosis</i> isolates and identify the genomic signatures associated with drug resistance, pathogenesis, and disease transmission. Isolate LJ319 of the <i>Mycobacterium tuberculosis</i> complex (MTC)-Beijing genotype circulating in Maharashtra, India, which was obtained from the cerebrospinal fluid (CSF) of an immunocompetent patient, was subjected to whole-genome sequencing.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00504-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36247085","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Genome Sequences for Three Strains of Kocuria rosea, Including the Type Strain. 包括型株在内的3株蔷薇病菌的基因组序列分析。
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00594-18
Ariel M Trachtenberg, Abigail E Goen, Kyle S MacLea
{"title":"Genome Sequences for Three Strains of Kocuria rosea, Including the Type Strain.","authors":"Ariel M Trachtenberg,&nbsp;Abigail E Goen,&nbsp;Kyle S MacLea","doi":"10.1128/genomeA.00594-18","DOIUrl":"https://doi.org/10.1128/genomeA.00594-18","url":null,"abstract":"<p><p>Genomes from three strains of <i>Kocuria rosea</i> were sequenced. <i>K. rosea</i> ATCC 186, the type strain, was 3,958,612 bp in length with a total G+C content of 72.70%. When assembled, <i>K. rosea</i> ATCC 516 was 3,862,128 bp with a 72.82% G+C content. <i>K. rosea</i> ATCC 49321 was 4,018,783 bp in size with a 72.49% G+C content.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00594-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36245200","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Complete Genome Sequence of Bacillus velezensis LABIM40, an Effective Antagonist of Fungal Plant Pathogens. 植物真菌病原菌有效拮抗剂velezensis LABIM40全基因组序列研究
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00595-18
Julia Pezarini Baptista, Paula Pinheiro Sanches, Gustavo Manoel Teixeira, Alexandre Tadachi Morey, Eliandro Reis Tavares, Sueli Fumie Yamada-Ogatta, Sérgio Paulo Dejato da Rocha, Mariangela Hungria, Renan Augusto Ribeiro, Maria Isabel Balbi-Peña, Roberta Torres Chideroli, Ulisses de Padua Pereira, Admilton Gonçalves de Oliveira
{"title":"Complete Genome Sequence of Bacillus velezensis LABIM40, an Effective Antagonist of Fungal Plant Pathogens.","authors":"Julia Pezarini Baptista,&nbsp;Paula Pinheiro Sanches,&nbsp;Gustavo Manoel Teixeira,&nbsp;Alexandre Tadachi Morey,&nbsp;Eliandro Reis Tavares,&nbsp;Sueli Fumie Yamada-Ogatta,&nbsp;Sérgio Paulo Dejato da Rocha,&nbsp;Mariangela Hungria,&nbsp;Renan Augusto Ribeiro,&nbsp;Maria Isabel Balbi-Peña,&nbsp;Roberta Torres Chideroli,&nbsp;Ulisses de Padua Pereira,&nbsp;Admilton Gonçalves de Oliveira","doi":"10.1128/genomeA.00595-18","DOIUrl":"https://doi.org/10.1128/genomeA.00595-18","url":null,"abstract":"<p><p><i>Bacillus velezensis</i> strain LABIM40 holds high potential for biological control of plant pathogens. Its complete genome contains one chromosome of 3,972,310 bp with 3,777 DNA coding sequences and displays 33 gene clusters potentially involved in the suppression of fungal pathogens.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00595-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36245202","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 9
Six Whole-Genome Assemblies of Yersinia pestis subsp. microtus bv. ulegeica (Phylogroup 0.PE5) Strains Isolated from Mongolian Natural Plague Foci. 鼠疫耶尔森菌亚种的六个全基因组组装。从蒙古自然疫源地分离得到的小蠊（系统发育群0.PE5）菌株。
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00536-18
Angelina A Kislichkina, Alexandr G Bogun, Lidiya A Kadnikova, Nadezhda V Maiskaya, Viktor I Solomentsev, Angelika A Sizova, Svetlana V Dentovskaya, Sergey V Balakhonov, Andrey P Anisimov
{"title":"Six Whole-Genome Assemblies of Yersinia pestis subsp. microtus bv. ulegeica (Phylogroup 0.PE5) Strains Isolated from Mongolian Natural Plague Foci.","authors":"Angelina A Kislichkina,&nbsp;Alexandr G Bogun,&nbsp;Lidiya A Kadnikova,&nbsp;Nadezhda V Maiskaya,&nbsp;Viktor I Solomentsev,&nbsp;Angelika A Sizova,&nbsp;Svetlana V Dentovskaya,&nbsp;Sergey V Balakhonov,&nbsp;Andrey P Anisimov","doi":"10.1128/genomeA.00536-18","DOIUrl":"10.1128/genomeA.00536-18","url":null,"abstract":"<p><p>Here, we report the draft genome sequences of six <i>Yersinia pestis</i> subsp. <i>microtus</i> bv. ulegeica strains isolated from the territory of Mongolia and representing the 0.PE5 phylogroup circulating in populations of voles and picas.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00536-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36246401","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 9
Complete Genome Sequence of a Deletion Mutant of Vibrio parahaemolyticus from Pacific White Shrimp (Penaeus vannamei). 南美对虾副溶血性弧菌缺失突变体全基因组序列的研究。
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00544-18
Siddhartha Kanrar, Arun K Dhar
{"title":"Complete Genome Sequence of a Deletion Mutant of Vibrio parahaemolyticus from Pacific White Shrimp (Penaeus vannamei).","authors":"Siddhartha Kanrar,&nbsp;Arun K Dhar","doi":"10.1128/genomeA.00544-18","DOIUrl":"https://doi.org/10.1128/genomeA.00544-18","url":null,"abstract":"<p><p><i>Vibrio parahaemolyticus</i> carrying the toxin genes <i>pirA</i> and <i>pirB</i> causes acute hepatopancreatic necrosis disease in shrimp. A genome sequence of <i>V. parahaemolyticus</i> strain R13 was determined that showed deletions of the entire <i>pirA</i> gene and the 5' end of the <i>pirB</i> gene and does not cause the disease in experimental challenge.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00544-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36246406","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
Complete Genome Sequence of Bacillus subtilis Strain MH1, Which Has a High Level of Bacteriocin-Like Activity, Isolated from Soil in Bangladesh. 从孟加拉国土壤中分离出具有高水平细菌素样活性的枯草芽孢杆菌MH1株的全基因组序列
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00516-18
Mohammad Shahnoor Hossain, Marufa Zerin Akhter, Muhammad Maqsud Hossain, M Asaduzzaman Shishir, Shakila Nargis Khan, M Mozammel Hoq
{"title":"Complete Genome Sequence of Bacillus subtilis Strain MH1, Which Has a High Level of Bacteriocin-Like Activity, Isolated from Soil in Bangladesh.","authors":"Mohammad Shahnoor Hossain,&nbsp;Marufa Zerin Akhter,&nbsp;Muhammad Maqsud Hossain,&nbsp;M Asaduzzaman Shishir,&nbsp;Shakila Nargis Khan,&nbsp;M Mozammel Hoq","doi":"10.1128/genomeA.00516-18","DOIUrl":"https://doi.org/10.1128/genomeA.00516-18","url":null,"abstract":"<p><p><i>Bacillus subtilis</i> MH1 demonstrates a high level of bacteriocin activity against several pathogenic bacteria. We announce here the full-genome sequence of strain MH1, isolated from soil in Bangladesh. This genome length is 4,094,053 bp, with 43.5% GC content, 4,217 coding sequences (CDS), 10 rRNA, 84 tRNA, and 1 transfer-messenger RNA (tmRNA).</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00516-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36247033","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Draft Genome Sequence of Pseudomonas sp. Strain B1, Isolated from a Contaminated Sediment. 从污染沉积物中分离的假单胞菌B1菌株基因组序列草图。
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00518-18
Ashish Pathak, Rajneesh Jaswal, Paul Stothard, Scott Brooks, Ashvini Chauhan
{"title":"Draft Genome Sequence of Pseudomonas sp. Strain B1, Isolated from a Contaminated Sediment.","authors":"Ashish Pathak,&nbsp;Rajneesh Jaswal,&nbsp;Paul Stothard,&nbsp;Scott Brooks,&nbsp;Ashvini Chauhan","doi":"10.1128/genomeA.00518-18","DOIUrl":"https://doi.org/10.1128/genomeA.00518-18","url":null,"abstract":"<p><p>The draft genome sequence of <i>Pseudomonas</i> sp. strain B1, isolated from a contaminated soil, is reported. The genome comprises 6,706,934 bases, 6,059 coding sequences, and 70 RNAs and has a G+C content of 60.3%. A suite of biodegradative genes, many located on genomic islands, were identified from strain B1, further enhancing our understanding of the versatile pseudomonads.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00518-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36247034","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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