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Genome Sequence of Bacillus megaterium Strain YC4-R4, a Plant Growth-Promoting Rhizobacterium Isolated from a High-Salinity Environment. 从高盐环境中分离的植物促生长根瘤菌巨芽孢杆菌YC4-R4的基因组序列
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00527-18
Juan Ignacio Vílchez, Qiming Tang, Richa Kaushal, Wei Wang, Suhui Lv, Danxia He, Zhaoqing Chu, Heng Zhang, Renyi Liu, Huiming Zhang
{"title":"Genome Sequence of Bacillus megaterium Strain YC4-R4, a Plant Growth-Promoting Rhizobacterium Isolated from a High-Salinity Environment.","authors":"Juan Ignacio Vílchez,&nbsp;Qiming Tang,&nbsp;Richa Kaushal,&nbsp;Wei Wang,&nbsp;Suhui Lv,&nbsp;Danxia He,&nbsp;Zhaoqing Chu,&nbsp;Heng Zhang,&nbsp;Renyi Liu,&nbsp;Huiming Zhang","doi":"10.1128/genomeA.00527-18","DOIUrl":"https://doi.org/10.1128/genomeA.00527-18","url":null,"abstract":"<p><p>Here, we report the complete genome sequence for <i>Bacillus megaterium</i> strain YC4-R4, a highly salt-tolerant rhizobacterium that promotes growth in plants. The sequencing process was performed by combining pyrosequencing and single-molecule sequencing techniques. The complete genome is estimated to be approximately 5.44 Mb, containing a total of 5,673 predicted protein-coding DNA sequences (CDSs).</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00527-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36247038","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 12
Draft Genome Sequence of Serratia sp. Strain S1B, Isolated from Mercury-Contaminated Soil. 汞污染土壤中分离的沙雷氏菌S1B基因组序列草图
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00534-18
Ashish Pathak, Rajneesh Jaswal, Xiaoyu Xu, Ashvini Chauhan
{"title":"Draft Genome Sequence of Serratia sp. Strain S1B, Isolated from Mercury-Contaminated Soil.","authors":"Ashish Pathak,&nbsp;Rajneesh Jaswal,&nbsp;Xiaoyu Xu,&nbsp;Ashvini Chauhan","doi":"10.1128/genomeA.00534-18","DOIUrl":"https://doi.org/10.1128/genomeA.00534-18","url":null,"abstract":"<p><p>We report here the draft genome sequence of <i>Serratia</i> sp. strain S1B, comprising 7,710,841 bases, 7,075 coding sequences, a G+C content of 45.9%, and 138 RNAs. Notably, a repertoire of biodegradative genes, several occurring on genomic islands, was also identified, which enhances our understanding of the environmental relevance of <i>Serratia</i> spp.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00534-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36247041","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Genome Sequence of Listeria monocytogenes 2542, a Serotype 4b Strain from a Cheese-Related Outbreak in Portugal. 单核细胞增生李斯特菌2542的基因组序列，这是一种来自葡萄牙奶酪相关暴发的血清型4b菌株。
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00540-18
Vânia Ferreira, Rui Magalhães, Gonçalo Almeida, Didier Cabanes, Moritz Fritzenwanker, Trinad Chakraborty, Torsten Hain, Paula Teixeira
{"title":"Genome Sequence of Listeria monocytogenes 2542, a Serotype 4b Strain from a Cheese-Related Outbreak in Portugal.","authors":"Vânia Ferreira,&nbsp;Rui Magalhães,&nbsp;Gonçalo Almeida,&nbsp;Didier Cabanes,&nbsp;Moritz Fritzenwanker,&nbsp;Trinad Chakraborty,&nbsp;Torsten Hain,&nbsp;Paula Teixeira","doi":"10.1128/genomeA.00540-18","DOIUrl":"https://doi.org/10.1128/genomeA.00540-18","url":null,"abstract":"<p><p>We report here the draft genome sequence of <i>Listeria monocytogenes</i> 2542, a serotype 4b clinical strain recovered from a placental sample during a cheese-related listeriosis outbreak in Portugal.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00540-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36246404","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Draft Genome Sequence of Dyella sp. Strain C11, Isolated from a Malaysian Tropical Peat Swamp Forest. 马来西亚热带泥炭沼泽森林分离的Dyella sp.菌株C11基因组序列草图
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00459-18
Chin Chin Too, Kuan Shion Ong, Sui Mae Lee, Catherine M Yule, Alexander Keller
{"title":"Draft Genome Sequence of Dyella sp. Strain C11, Isolated from a Malaysian Tropical Peat Swamp Forest.","authors":"Chin Chin Too,&nbsp;Kuan Shion Ong,&nbsp;Sui Mae Lee,&nbsp;Catherine M Yule,&nbsp;Alexander Keller","doi":"10.1128/genomeA.00459-18","DOIUrl":"https://doi.org/10.1128/genomeA.00459-18","url":null,"abstract":"<p><p>We report here the draft genome sequences of a bacterial isolate, <i>Dyella</i> sp. strain C11, which was isolated from a Malaysian tropical peat swamp forest. The putative genes for the biogeochemical processes were annotated, and the genome was deposited in an online database.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00459-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36247080","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Genome Sequences of 12 Mycobacteriophages Recovered from Archival Stocks in Japan. 从日本档案中发现的 12 种噬菌体的基因组序列。
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00472-18
Jumpei Uchiyama, Keijiro Mizukami, Koji Yahara, Shin-Ichiro Kato, Hironobu Murakami, Tadahiro Nasukawa, Naoya Ohara, Midori Ogawa, Toshio Yamazaki, Shigenobu Matsuzaki, Masahiro Sakaguchi
{"title":"Genome Sequences of 12 Mycobacteriophages Recovered from Archival Stocks in Japan.","authors":"Jumpei Uchiyama, Keijiro Mizukami, Koji Yahara, Shin-Ichiro Kato, Hironobu Murakami, Tadahiro Nasukawa, Naoya Ohara, Midori Ogawa, Toshio Yamazaki, Shigenobu Matsuzaki, Masahiro Sakaguchi","doi":"10.1128/genomeA.00472-18","DOIUrl":"10.1128/genomeA.00472-18","url":null,"abstract":"<p><p>Using <i>Mycobacterium smegmatis</i> mc<sup>2</sup>155, 12 siphoviruses were recovered from long-term archival stocks stored in Japan. Their genome sequences were 46.0 to 61.3 kbp with 63 to 68% G+C contents, which allowed them to be categorized within cluster W and subclusters A1, A2, B3, A7, I1, and K4.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6013612/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36247081","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Characterization of the Microbiota of Oyster Larvae (Crassostrea virginica) and Tank Water from an Aquaculture System with High and Low Larval Survival Rates. 高、低成活率养殖系统中牡蛎幼虫和水箱水的微生物群特征
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00597-18
Padmini Ramachandran, Elizabeth Reed, Seth Commichaux, Errol Strain, Angelo Depaola, Scott Rikard, Andrea Ottesen
{"title":"Characterization of the Microbiota of Oyster Larvae (Crassostrea virginica) and Tank Water from an Aquaculture System with High and Low Larval Survival Rates.","authors":"Padmini Ramachandran,&nbsp;Elizabeth Reed,&nbsp;Seth Commichaux,&nbsp;Errol Strain,&nbsp;Angelo Depaola,&nbsp;Scott Rikard,&nbsp;Andrea Ottesen","doi":"10.1128/genomeA.00597-18","DOIUrl":"https://doi.org/10.1128/genomeA.00597-18","url":null,"abstract":"<p><p>Aquaculture plays an increasingly important role in the growing demand for seafood. Hatchery production of oyster larvae is an integral component of oyster farming, providing single seed for off-bottom farming or larvae for setting on larger substrates for on-bottom farming. Larvae from certain tanks in an established aquaculture enterprise were dying from an unknown etiologic agent. A metagenomic approach was used to examine oyster larvae and water from larval tanks with high and low survival rates to evaluate the epidemiological efficacy of this approach.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00597-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36245201","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
Complete Coding Sequences of Five Dengue Virus Type 2 Clinical Isolates from Venezuela Obtained through Shotgun Metagenomics. 利用霰弹枪宏基因组法获得委内瑞拉5株登革热病毒2型临床分离株的完整编码序列
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00545-18
Erley Lizarazo, Natacha Couto, Maria Vincenti-Gonzalez, Erwin C Raangs, Thomas Jaenisch, Alex W Friedrich, Adriana Tami, John W Rossen
{"title":"Complete Coding Sequences of Five Dengue Virus Type 2 Clinical Isolates from Venezuela Obtained through Shotgun Metagenomics.","authors":"Erley Lizarazo,&nbsp;Natacha Couto,&nbsp;Maria Vincenti-Gonzalez,&nbsp;Erwin C Raangs,&nbsp;Thomas Jaenisch,&nbsp;Alex W Friedrich,&nbsp;Adriana Tami,&nbsp;John W Rossen","doi":"10.1128/genomeA.00545-18","DOIUrl":"https://doi.org/10.1128/genomeA.00545-18","url":null,"abstract":"<p><p>Dengue is a disease endemic in Latin American countries, like Venezuela, and has become one of the most important public health problems. We report five complete coding sequences of dengue virus serotype 2 (DENV-2) isolated from DENV-infected patients in Venezuela. Phylogenetic analysis placed the isolates within the American/Asian genotype.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00545-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36246407","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
First Whole-Genome Characterization of Avian Nephritis Virus 2 of Broiler Chicken from Pará, Brazil. 巴西par<s:1>肉鸡禽肾炎病毒2型的首次全基因组鉴定
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00510-18
Ceyla Maria Oeiras Castro, Elaine Hellen Nunes Chagas, Delana Andreza Melo Bezerra, Sandro Patroca da Silva, Ana Cecília Ribeiro Cruz, Edivaldo Costa Sousa Júnior, René Ribeiro Silva, Hugo Reis Resque, Yvone Benchimol Gabbay, Joana D'Arc Pereira Mascarenhas
{"title":"First Whole-Genome Characterization of Avian Nephritis Virus 2 of Broiler Chicken from Pará, Brazil.","authors":"Ceyla Maria Oeiras Castro,&nbsp;Elaine Hellen Nunes Chagas,&nbsp;Delana Andreza Melo Bezerra,&nbsp;Sandro Patroca da Silva,&nbsp;Ana Cecília Ribeiro Cruz,&nbsp;Edivaldo Costa Sousa Júnior,&nbsp;René Ribeiro Silva,&nbsp;Hugo Reis Resque,&nbsp;Yvone Benchimol Gabbay,&nbsp;Joana D'Arc Pereira Mascarenhas","doi":"10.1128/genomeA.00510-18","DOIUrl":"https://doi.org/10.1128/genomeA.00510-18","url":null,"abstract":"<p><p>Our results show the first full-genome characterization of avian nephritis virus 2 recovered from stools of broiler chickens at a commercial farm located in Benevides, Pará, Brazil. Nucleotide analyses of whole-genome sequences showed the isolate to be a strain of <i>Avastrovirus 2</i> in the family <i>Astroviridae</i>.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00510-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36247087","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Draft Genome Sequence of Bifidobacterium longum UMA026, Isolated from Holstein Dairy Cow Feces. 荷斯坦奶牛粪便长双歧杆菌UMA026基因组序列草图
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00559-18
Korin Albert, David A Sela
{"title":"Draft Genome Sequence of Bifidobacterium longum UMA026, Isolated from Holstein Dairy Cow Feces.","authors":"Korin Albert,&nbsp;David A Sela","doi":"10.1128/genomeA.00559-18","DOIUrl":"https://doi.org/10.1128/genomeA.00559-18","url":null,"abstract":"<p><p>The draft genome sequence of an isolate identified as <i>Bifidobacterium longum</i> is communicated herein. This strain was isolated from the feces of a 1-week-old Holstein dairy cow. The draft genome of this <i>Bifidobacterium longum</i> isolate is 2.39 Mb in length, with a G+C content of 60.1%.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00559-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36246856","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genome Sequence of the Emerging Mycotoxin-Producing Filamentous Fungus Fusarium tricinctum Strain INRA104. 新兴产真菌毒素丝状真菌枯萎菌INRA104的基因组序列。
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00509-18
Nadia Ponts, Florence Richard-Forget, Honghai Zhang, Gérard Barroso, Chen Zhao
{"title":"Genome Sequence of the Emerging Mycotoxin-Producing Filamentous Fungus Fusarium tricinctum Strain INRA104.","authors":"Nadia Ponts,&nbsp;Florence Richard-Forget,&nbsp;Honghai Zhang,&nbsp;Gérard Barroso,&nbsp;Chen Zhao","doi":"10.1128/genomeA.00509-18","DOIUrl":"https://doi.org/10.1128/genomeA.00509-18","url":null,"abstract":"<p><p>The genome of the phytopathogenic fungus <i>Fusarium tricinctum</i> strain INRA104 was sequenced at a fold-coverage of more than 500×. This led to 23 scaffolds, including one scaffold for the mitochondrial genome, for a total genome size of 42.8 Mb, with an average GC content of 45% and 13,387 predicted genes.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00509-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36247086","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
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