{"title":"Draft Genome Sequence of Lawsonibacter asaccharolyticus JCM 32166<sup>T</sup>, a Butyrate-Producing Bacterium, Isolated from Human Feces.","authors":"Mitsuo Sakamoto, Nao Ikeyama, Masahiro Yuki, Moriya Ohkuma","doi":"10.1128/genomeA.00563-18","DOIUrl":"https://doi.org/10.1128/genomeA.00563-18","url":null,"abstract":"<p><p>Here, we report the draft genome sequence of <i>Lawsonibacter asaccharolyticus</i> JCM 32166<sup>T</sup>, a butyrate-producing bacterium, isolated from human feces. The genomic analysis reveals genes for butyrate synthesis and will facilitate the study on the role of this strain in the human gut.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00563-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36246859","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Solange Ngazoa-Kakou, Cécile Philippe, Denise M Tremblay, Stéphanie Loignon, Aristide Koudou, Ahmed Abole, David Ngolo Coulibaly, Stéphane Kan Kouassi, Mireille Kouamé Sina, Serge Aoussi, Mireille Dosso, Sylvain Moineau
{"title":"Complete Genome Sequence of Ebrios, a Novel T7virus Isolated from the Ebrie Lagoon in Abidjan, Côte d'Ivoire.","authors":"Solange Ngazoa-Kakou, Cécile Philippe, Denise M Tremblay, Stéphanie Loignon, Aristide Koudou, Ahmed Abole, David Ngolo Coulibaly, Stéphane Kan Kouassi, Mireille Kouamé Sina, Serge Aoussi, Mireille Dosso, Sylvain Moineau","doi":"10.1128/genomeA.00280-18","DOIUrl":"https://doi.org/10.1128/genomeA.00280-18","url":null,"abstract":"<p><p>The lytic <i>Escherichia coli</i> phage Ebrios was isolated from a water sample collected in Ebrie Lagoon on the Adiopodoumé River in Abidjan (Republic of Côte d'Ivoire, West Africa). The linear genome of this <i>Podoviridae</i> family member contains 39,752 bp, has a G+C content of 52.9%, is composed of 53 open reading frames, and is related to the <i>Stenotrophomonas maltophilia</i> phage IME15.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00280-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36247079","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Draft Genome Sequence of a Clinical Isolate of Fusarium fujikuroi Isolated from a Male Patient with Acute Myeloid Leukemia.","authors":"Camilla Urbaniak, Sanjeet Dadwal, Karine Bagramyan, Kasthuri Venkateswaran","doi":"10.1128/genomeA.00476-18","DOIUrl":"https://doi.org/10.1128/genomeA.00476-18","url":null,"abstract":"<p><p>Here, we present the draft whole-genome sequence of a clinical isolate of <i>Fusarium fujikuroi</i> cultured from a patient undergoing chemotherapy for refractory acute myeloid leukemia.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00476-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36247082","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
David H Huber, Jesus E Chavarria-Palma, Sridhar A Malkaram, Natalia A Montenegro-Garcia, Vadesse Lhilhi Noundou, Ifeoma R Ugwuanyi, Teodoro Espinosa-Solares
{"title":"Metagenome Sequences of a Thermophilic Anaerobic Digester Adapted to a Low C/N Ratio, High-Ammonia Feedstock (Poultry Litter).","authors":"David H Huber, Jesus E Chavarria-Palma, Sridhar A Malkaram, Natalia A Montenegro-Garcia, Vadesse Lhilhi Noundou, Ifeoma R Ugwuanyi, Teodoro Espinosa-Solares","doi":"10.1128/genomeA.00598-18","DOIUrl":"10.1128/genomeA.00598-18","url":null,"abstract":"<p><p>We sequenced the metagenome of a pilot-scale thermophilic digester with long-term, stable performance on poultry litter feedstock which has a very low C/N ratio, a high ammonia level, and high lignocellulose content. <i>Firmicutes</i> were the dominant phylum (68.9%). Other abundant phyla included <i>Bacteroidetes</i>, <i>Euryarchaeota</i>, and <i>Thermotogae</i> This microbiome represents a hydrogenotrophic methanogenic community with high diversity.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6013616/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36246760","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Genome Sequence of Bacillus megaterium Strain YC4-R4, a Plant Growth-Promoting Rhizobacterium Isolated from a High-Salinity Environment.","authors":"Juan Ignacio Vílchez, Qiming Tang, Richa Kaushal, Wei Wang, Suhui Lv, Danxia He, Zhaoqing Chu, Heng Zhang, Renyi Liu, Huiming Zhang","doi":"10.1128/genomeA.00527-18","DOIUrl":"https://doi.org/10.1128/genomeA.00527-18","url":null,"abstract":"<p><p>Here, we report the complete genome sequence for <i>Bacillus megaterium</i> strain YC4-R4, a highly salt-tolerant rhizobacterium that promotes growth in plants. The sequencing process was performed by combining pyrosequencing and single-molecule sequencing techniques. The complete genome is estimated to be approximately 5.44 Mb, containing a total of 5,673 predicted protein-coding DNA sequences (CDSs).</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00527-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36247038","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Draft Genome Sequence of Serratia sp. Strain S1B, Isolated from Mercury-Contaminated Soil.","authors":"Ashish Pathak, Rajneesh Jaswal, Xiaoyu Xu, Ashvini Chauhan","doi":"10.1128/genomeA.00534-18","DOIUrl":"https://doi.org/10.1128/genomeA.00534-18","url":null,"abstract":"<p><p>We report here the draft genome sequence of <i>Serratia</i> sp. strain S1B, comprising 7,710,841 bases, 7,075 coding sequences, a G+C content of 45.9%, and 138 RNAs. Notably, a repertoire of biodegradative genes, several occurring on genomic islands, was also identified, which enhances our understanding of the environmental relevance of <i>Serratia</i> spp.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00534-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36247041","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Thao D Tran, Steven Huynh, Craig T Parker, Robert Hnasko, Lisa Gorski, Jeffery A McGarvey
{"title":"Complete Genome Sequences of Three Bacillus amyloliquefaciens Strains That Inhibit the Growth of Listeria monocytogenes <i>In Vitro</i>.","authors":"Thao D Tran, Steven Huynh, Craig T Parker, Robert Hnasko, Lisa Gorski, Jeffery A McGarvey","doi":"10.1128/genomeA.00579-18","DOIUrl":"https://doi.org/10.1128/genomeA.00579-18","url":null,"abstract":"<p><p>Here, we report the complete genome sequences of three <i>Bacillus amyloliquefaciens</i> strains isolated from alfalfa, almond drupes, and grapes that inhibited the growth of <i>Listeria monocytogenes</i> strain 2011L-2857 <i>in vitro</i> We also report multiple gene clusters encoding secondary metabolites that may be responsible for the growth inhibition of <i>L. monocytogenes</i>.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00579-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36245197","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Denis S Grouzdev, Tamara L Babich, Tatiyana P Tourova, Diyana S Sokolova, Ruslan R Abdullin, Andrey B Poltaraus, Margarita A Schevchenko, Stepan V Toshchakov, Tamara N Nazina
{"title":"Draft Genome Sequence of Roseomonas aestuarii Strain JR1/69-1-13 Isolated from Nitrate- and Radionuclide-Contaminated Groundwater in Russia.","authors":"Denis S Grouzdev, Tamara L Babich, Tatiyana P Tourova, Diyana S Sokolova, Ruslan R Abdullin, Andrey B Poltaraus, Margarita A Schevchenko, Stepan V Toshchakov, Tamara N Nazina","doi":"10.1128/genomeA.00583-18","DOIUrl":"https://doi.org/10.1128/genomeA.00583-18","url":null,"abstract":"<p><p>The draft genome sequence of <i>Roseomonas aestuarii</i> strain JR1/69-1-13, an aerobic chemoorganotrophic bacterium isolated from nitrate- and radionuclide-contaminated groundwater in Russia, is presented here. The genome was annotated to elucidate the genomic basis for the strain's adaptation to the environment and its resistance to nitrate, heavy metals, and metalloids.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00583-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36245198","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Megan N Biango-Daniels, Tristan W Wang, Kathie T Hodge
{"title":"Draft Genome Sequence of the Patulin-Producing Fungus Paecilomyces niveus Strain CO7.","authors":"Megan N Biango-Daniels, Tristan W Wang, Kathie T Hodge","doi":"10.1128/genomeA.00556-18","DOIUrl":"10.1128/genomeA.00556-18","url":null,"abstract":"<p><p><i>Paecilomyces niveus</i> is an extremotolerant fungus with surprising powers to survive high temperatures and infect apples and aphids. These abilities make it a formidable enemy in food and agricultural environments. In addition, it produces patulin, the most significant mycotoxin in apples.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00556-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36246855","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}