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Draft Genome Sequence of Lawsonibacter asaccharolyticus JCM 32166T, a Butyrate-Producing Bacterium, Isolated from Human Feces. 从人类粪便中分离的产丁酸盐的Lawsonibacter asaccharolyticus JCM 32166T基因组序列草图
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00563-18
Mitsuo Sakamoto, Nao Ikeyama, Masahiro Yuki, Moriya Ohkuma
{"title":"Draft Genome Sequence of Lawsonibacter asaccharolyticus JCM 32166<sup>T</sup>, a Butyrate-Producing Bacterium, Isolated from Human Feces.","authors":"Mitsuo Sakamoto,&nbsp;Nao Ikeyama,&nbsp;Masahiro Yuki,&nbsp;Moriya Ohkuma","doi":"10.1128/genomeA.00563-18","DOIUrl":"https://doi.org/10.1128/genomeA.00563-18","url":null,"abstract":"<p><p>Here, we report the draft genome sequence of <i>Lawsonibacter asaccharolyticus</i> JCM 32166<sup>T</sup>, a butyrate-producing bacterium, isolated from human feces. The genomic analysis reveals genes for butyrate synthesis and will facilitate the study on the role of this strain in the human gut.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00563-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36246859","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 7
Complete Genome Sequence of Ebrios, a Novel T7virus Isolated from the Ebrie Lagoon in Abidjan, Côte d'Ivoire. 从科特迪瓦阿比让埃布里泻湖分离的新型t7病毒埃布里奥斯的全基因组序列(Côte d'科特迪瓦)
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00280-18
Solange Ngazoa-Kakou, Cécile Philippe, Denise M Tremblay, Stéphanie Loignon, Aristide Koudou, Ahmed Abole, David Ngolo Coulibaly, Stéphane Kan Kouassi, Mireille Kouamé Sina, Serge Aoussi, Mireille Dosso, Sylvain Moineau
{"title":"Complete Genome Sequence of Ebrios, a Novel T7virus Isolated from the Ebrie Lagoon in Abidjan, Côte d'Ivoire.","authors":"Solange Ngazoa-Kakou,&nbsp;Cécile Philippe,&nbsp;Denise M Tremblay,&nbsp;Stéphanie Loignon,&nbsp;Aristide Koudou,&nbsp;Ahmed Abole,&nbsp;David Ngolo Coulibaly,&nbsp;Stéphane Kan Kouassi,&nbsp;Mireille Kouamé Sina,&nbsp;Serge Aoussi,&nbsp;Mireille Dosso,&nbsp;Sylvain Moineau","doi":"10.1128/genomeA.00280-18","DOIUrl":"https://doi.org/10.1128/genomeA.00280-18","url":null,"abstract":"<p><p>The lytic <i>Escherichia coli</i> phage Ebrios was isolated from a water sample collected in Ebrie Lagoon on the Adiopodoumé River in Abidjan (Republic of Côte d'Ivoire, West Africa). The linear genome of this <i>Podoviridae</i> family member contains 39,752 bp, has a G+C content of 52.9%, is composed of 53 open reading frames, and is related to the <i>Stenotrophomonas maltophilia</i> phage IME15.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00280-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36247079","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Draft Genome Sequence of a Clinical Isolate of Fusarium fujikuroi Isolated from a Male Patient with Acute Myeloid Leukemia. 从男性急性髓系白血病患者中分离的藤黑镰刀菌临床分离物基因组序列草图。
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00476-18
Camilla Urbaniak, Sanjeet Dadwal, Karine Bagramyan, Kasthuri Venkateswaran
{"title":"Draft Genome Sequence of a Clinical Isolate of Fusarium fujikuroi Isolated from a Male Patient with Acute Myeloid Leukemia.","authors":"Camilla Urbaniak,&nbsp;Sanjeet Dadwal,&nbsp;Karine Bagramyan,&nbsp;Kasthuri Venkateswaran","doi":"10.1128/genomeA.00476-18","DOIUrl":"https://doi.org/10.1128/genomeA.00476-18","url":null,"abstract":"<p><p>Here, we present the draft whole-genome sequence of a clinical isolate of <i>Fusarium fujikuroi</i> cultured from a patient undergoing chemotherapy for refractory acute myeloid leukemia.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00476-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36247082","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Metagenome Sequences of a Thermophilic Anaerobic Digester Adapted to a Low C/N Ratio, High-Ammonia Feedstock (Poultry Litter). 适应低C/N比、高氨氮原料（家禽粪便）的嗜热厌氧消化器的元基因组序列。
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00598-18
David H Huber, Jesus E Chavarria-Palma, Sridhar A Malkaram, Natalia A Montenegro-Garcia, Vadesse Lhilhi Noundou, Ifeoma R Ugwuanyi, Teodoro Espinosa-Solares
{"title":"Metagenome Sequences of a Thermophilic Anaerobic Digester Adapted to a Low C/N Ratio, High-Ammonia Feedstock (Poultry Litter).","authors":"David H Huber, Jesus E Chavarria-Palma, Sridhar A Malkaram, Natalia A Montenegro-Garcia, Vadesse Lhilhi Noundou, Ifeoma R Ugwuanyi, Teodoro Espinosa-Solares","doi":"10.1128/genomeA.00598-18","DOIUrl":"10.1128/genomeA.00598-18","url":null,"abstract":"<p><p>We sequenced the metagenome of a pilot-scale thermophilic digester with long-term, stable performance on poultry litter feedstock which has a very low C/N ratio, a high ammonia level, and high lignocellulose content. <i>Firmicutes</i> were the dominant phylum (68.9%). Other abundant phyla included <i>Bacteroidetes</i>, <i>Euryarchaeota</i>, and <i>Thermotogae</i> This microbiome represents a hydrogenotrophic methanogenic community with high diversity.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6013616/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36246760","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Complete Genome Sequences of Three Bacillus amyloliquefaciens Strains That Inhibit the Growth of Listeria monocytogenes In Vitro. 体外抑制单核增生李斯特菌生长的三株解淀粉芽孢杆菌的全基因组序列。
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00579-18
Thao D Tran, Steven Huynh, Craig T Parker, Robert Hnasko, Lisa Gorski, Jeffery A McGarvey
{"title":"Complete Genome Sequences of Three Bacillus amyloliquefaciens Strains That Inhibit the Growth of Listeria monocytogenes <i>In Vitro</i>.","authors":"Thao D Tran,&nbsp;Steven Huynh,&nbsp;Craig T Parker,&nbsp;Robert Hnasko,&nbsp;Lisa Gorski,&nbsp;Jeffery A McGarvey","doi":"10.1128/genomeA.00579-18","DOIUrl":"https://doi.org/10.1128/genomeA.00579-18","url":null,"abstract":"<p><p>Here, we report the complete genome sequences of three <i>Bacillus amyloliquefaciens</i> strains isolated from alfalfa, almond drupes, and grapes that inhibited the growth of <i>Listeria monocytogenes</i> strain 2011L-2857 <i>in vitro</i> We also report multiple gene clusters encoding secondary metabolites that may be responsible for the growth inhibition of <i>L. monocytogenes</i>.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00579-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36245197","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
Draft Genome Sequence of Roseomonas aestuarii Strain JR1/69-1-13 Isolated from Nitrate- and Radionuclide-Contaminated Groundwater in Russia. 俄罗斯硝酸盐和放射性核素污染地下水中分离的河口玫瑰单胞菌JR1/69-1-13基因组序列草图
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00583-18
Denis S Grouzdev, Tamara L Babich, Tatiyana P Tourova, Diyana S Sokolova, Ruslan R Abdullin, Andrey B Poltaraus, Margarita A Schevchenko, Stepan V Toshchakov, Tamara N Nazina
{"title":"Draft Genome Sequence of Roseomonas aestuarii Strain JR1/69-1-13 Isolated from Nitrate- and Radionuclide-Contaminated Groundwater in Russia.","authors":"Denis S Grouzdev,&nbsp;Tamara L Babich,&nbsp;Tatiyana P Tourova,&nbsp;Diyana S Sokolova,&nbsp;Ruslan R Abdullin,&nbsp;Andrey B Poltaraus,&nbsp;Margarita A Schevchenko,&nbsp;Stepan V Toshchakov,&nbsp;Tamara N Nazina","doi":"10.1128/genomeA.00583-18","DOIUrl":"https://doi.org/10.1128/genomeA.00583-18","url":null,"abstract":"<p><p>The draft genome sequence of <i>Roseomonas aestuarii</i> strain JR1/69-1-13, an aerobic chemoorganotrophic bacterium isolated from nitrate- and radionuclide-contaminated groundwater in Russia, is presented here. The genome was annotated to elucidate the genomic basis for the strain's adaptation to the environment and its resistance to nitrate, heavy metals, and metalloids.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00583-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36245198","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Draft Genome Sequence of the Patulin-Producing Fungus Paecilomyces niveus Strain CO7. 产棒曲霉素真菌雪拟青霉CO7。
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00556-18
Megan N Biango-Daniels, Tristan W Wang, Kathie T Hodge
{"title":"Draft Genome Sequence of the Patulin-Producing Fungus Paecilomyces niveus Strain CO7.","authors":"Megan N Biango-Daniels,&nbsp;Tristan W Wang,&nbsp;Kathie T Hodge","doi":"10.1128/genomeA.00556-18","DOIUrl":"10.1128/genomeA.00556-18","url":null,"abstract":"<p><p><i>Paecilomyces niveus</i> is an extremotolerant fungus with surprising powers to survive high temperatures and infect apples and aphids. These abilities make it a formidable enemy in food and agricultural environments. In addition, it produces patulin, the most significant mycotoxin in apples.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00556-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36246855","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 13
Complete Genome Sequence of Broad-Host-Range Shiga Toxin-Converting Bacteriophage SH2026Stx1, Isolated from Escherichia coli O157:H7. 大肠杆菌O157:H7中志贺毒素转化噬菌体SH2026Stx1的全基因组序列
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00490-18
Mingrui Duan, Samuel S Hunter, Scott A Minnich, Matthew W Fagnan, Daniel D New, Carolyn J Hovde, Haiqing Sheng
{"title":"Complete Genome Sequence of Broad-Host-Range Shiga Toxin-Converting Bacteriophage SH2026Stx1, Isolated from Escherichia coli O157:H7.","authors":"Mingrui Duan,&nbsp;Samuel S Hunter,&nbsp;Scott A Minnich,&nbsp;Matthew W Fagnan,&nbsp;Daniel D New,&nbsp;Carolyn J Hovde,&nbsp;Haiqing Sheng","doi":"10.1128/genomeA.00490-18","DOIUrl":"https://doi.org/10.1128/genomeA.00490-18","url":null,"abstract":"<p><p>The Shiga toxin-encoding phage SH2026Stx1 was isolated from <i>Escherichia coli</i> O157:H7 strain 2026. SH2026Stx1 and its detoxified derivative can infect a broad range of <i>E. coli</i> strains, including commensal, enteropathogenic, and enteroaggregative strains. We report here the complete genome sequence of phage SH2026Stx1 and its important features.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00490-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36247083","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Complete Genome Sequences of HonestAbe, Anthony, and Taffo16, Three Cluster C Bacillus cereus Group Bacteriophages. 三种C簇蜡样芽孢杆菌群噬菌体honestae、Anthony和Taffo16的全基因组序列
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00493-18
Martin Lee, Kayla M Puglisi, Ivan Erill, Steven M Caruso
{"title":"Complete Genome Sequences of HonestAbe, Anthony, and Taffo16, Three Cluster C Bacillus cereus Group Bacteriophages.","authors":"Martin Lee,&nbsp;Kayla M Puglisi,&nbsp;Ivan Erill,&nbsp;Steven M Caruso","doi":"10.1128/genomeA.00493-18","DOIUrl":"https://doi.org/10.1128/genomeA.00493-18","url":null,"abstract":"<p><p>Three cluster C <i>Myoviridae</i> bacteriophages that infect <i>Bacillus cereus</i> group bacteria were isolated from soil collected in the mid-Atlantic region using <i>B. thuringiensis</i> subsp. <i>kurstaki</i> as a host. <i>Bacillus</i> phages HonestAbe, Anthony, and Taffo16 each shared 90% or higher average nucleotide identities within their subclusters.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00493-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36247084","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Complete Sequences of the Human T-Cell Leukemia Virus Type 1 Proviral Genomes from Newly Established Adult T-Cell Leukemia Cell Lines in Oita Prefecture, Japan. 日本大分县新建立的成人 T 细胞白血病细胞系中的人类 T 细胞白血病病毒 1 型病毒基因组的完整序列。
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00090-18
Takuro Fukumoto, Emi Ikebe, Masao Ogata, Kazuhiro Kohno, Madoka Kuramitsu, Yusuke Sato, Nichole Fife, Takashi Matsumoto, Takaaki Yahiro, Masanori Ikeda, Shuichi Kusano, Akihiko Okayama, Mitsuo Hori, Naoki Hijiya, Yoshiyuki Tsukamoto, Yuka Hirashita, Masatsugu Moriyama, Kamruddin Ahmed, Hiroo Hasegawa, Akira Nishizono, Masumichi Saito, Hidekatsu Iha
{"title":"Complete Sequences of the Human T-Cell Leukemia Virus Type 1 Proviral Genomes from Newly Established Adult T-Cell Leukemia Cell Lines in Oita Prefecture, Japan.","authors":"Takuro Fukumoto, Emi Ikebe, Masao Ogata, Kazuhiro Kohno, Madoka Kuramitsu, Yusuke Sato, Nichole Fife, Takashi Matsumoto, Takaaki Yahiro, Masanori Ikeda, Shuichi Kusano, Akihiko Okayama, Mitsuo Hori, Naoki Hijiya, Yoshiyuki Tsukamoto, Yuka Hirashita, Masatsugu Moriyama, Kamruddin Ahmed, Hiroo Hasegawa, Akira Nishizono, Masumichi Saito, Hidekatsu Iha","doi":"10.1128/genomeA.00090-18","DOIUrl":"10.1128/genomeA.00090-18","url":null,"abstract":"<p><p>We report two complete proviral genome sequences of human T-cell leukemia virus type 1 (HTLV-1) isolated from the peripheral blood specimens of acute type adult T-cell leukemia (ATL) patients in Oita Prefecture, Japan.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6013615/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36246016","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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