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Draft Genome Assemblages of 10 Xanthomonas vasicola pv. zeae Strains, Pathogens Causing Leaf Streak Disease of Maize in South Africa. 10株vasicola黄单胞菌基因组图谱。引起南非玉米条纹病的玉米菌株。
Genome Announcements Pub Date : 2018-06-28 DOI: 10.1128/genomeA.00532-18
Tomasz J Sanko, Astrid S Kraemer, Niklaas Niemann, Arvind K Gupta, Bradley C Flett, Charlotte Mienie, Carlos C Bezuidenhout
{"title":"Draft Genome Assemblages of 10 Xanthomonas vasicola pv. zeae Strains, Pathogens Causing Leaf Streak Disease of Maize in South Africa.","authors":"Tomasz J Sanko,&nbsp;Astrid S Kraemer,&nbsp;Niklaas Niemann,&nbsp;Arvind K Gupta,&nbsp;Bradley C Flett,&nbsp;Charlotte Mienie,&nbsp;Carlos C Bezuidenhout","doi":"10.1128/genomeA.00532-18","DOIUrl":"https://doi.org/10.1128/genomeA.00532-18","url":null,"abstract":"<p><p>Maize bacterial leaf streak disease has spread across maize crops in South Africa and therefore potentially poses a threat to maize production and food security. Until recently, this pathogen was identified as a <i>Xanthomonas campestris</i> pathovar, whereas our South African genomes seem to be more divergent and create their own subclade.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00532-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36268139","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Draft Genome Sequence of a Potentially Novel Streptococcus Species Belonging to the Streptococcus mitis Group. 一种潜在的新型链球菌属炎链球菌群的基因组序列草图。
Genome Announcements Pub Date : 2018-06-28 DOI: 10.1128/genomeA.00620-18
Ingerid Ø Kirkeleite, Jon Bohlin, Lonneke Scheffer, Einar T Weme, Didrik F Vestrheim
{"title":"Draft Genome Sequence of a Potentially Novel Streptococcus Species Belonging to the Streptococcus mitis Group.","authors":"Ingerid Ø Kirkeleite,&nbsp;Jon Bohlin,&nbsp;Lonneke Scheffer,&nbsp;Einar T Weme,&nbsp;Didrik F Vestrheim","doi":"10.1128/genomeA.00620-18","DOIUrl":"https://doi.org/10.1128/genomeA.00620-18","url":null,"abstract":"<p><p>We report here the draft genome sequence of a <i>Streptococcus</i> species belonging to the <i>S. mitis</i> group. While a clear species identification cannot be made for the isolate, it appears that its most recent common ancestor is the species <i>S. pseudopneumoniae</i>.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00620-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36268464","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Genome Sequence of the Soybean Cyst Nematode (Heterodera glycines) Endosymbiont "Candidatus Cardinium hertigii" Strain cHgTN10. 大豆囊性线虫（Heterodera glycines）内共生体“Candidatus Cardinium hertigii”菌株cHgTN10。
Genome Announcements Pub Date : 2018-06-28 DOI: 10.1128/genomeA.00624-18
Kurt C Showmaker, Kimberly K O Walden, Christopher J Fields, Kris N Lambert, Matthew E Hudson
{"title":"Genome Sequence of the Soybean Cyst Nematode (Heterodera glycines) Endosymbiont \"Candidatus Cardinium hertigii\" Strain cHgTN10.","authors":"Kurt C Showmaker,&nbsp;Kimberly K O Walden,&nbsp;Christopher J Fields,&nbsp;Kris N Lambert,&nbsp;Matthew E Hudson","doi":"10.1128/genomeA.00624-18","DOIUrl":"10.1128/genomeA.00624-18","url":null,"abstract":"<p><p>In this study, we present the genome sequence of the \"<i>Candidatus</i> Cardinium hertigii\" strain cHgTN10, an endosymbiotic bacterium of the plant-parasitic nematode <i>Heterodera glycines</i> This is the first genome assembly reported for an endosymbiont directly sequenced from a tylenchid nematode.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00624-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36268468","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 7
Genome Sequence of Torulaspora microellipsoides CLIB 830T. 微椭球虫CLIB 830T基因组序列。
Genome Announcements Pub Date : 2018-06-28 DOI: 10.1128/genomeA.00615-18
Virginie Galeote, Frédéric Bigey, Hugo Devillers, Raúl A Ortiz-Merino, Sylvie Dequin, Kenneth H Wolfe, Cécile Neuvéglise
{"title":"Genome Sequence of Torulaspora microellipsoides CLIB 830<sup>T</sup>.","authors":"Virginie Galeote,&nbsp;Frédéric Bigey,&nbsp;Hugo Devillers,&nbsp;Raúl A Ortiz-Merino,&nbsp;Sylvie Dequin,&nbsp;Kenneth H Wolfe,&nbsp;Cécile Neuvéglise","doi":"10.1128/genomeA.00615-18","DOIUrl":"https://doi.org/10.1128/genomeA.00615-18","url":null,"abstract":"<p><p>We report here the genome sequence of the ascomycetous yeast <i>Torulaspora microellipsoides</i> CLIB 830<sup>T</sup> A reference genome for this species, which has been found as a donor of genetic material in wine strains of <i>Saccharomyces cerevisiae</i>, will undoubtedly give clues to our understanding of horizontal transfer mechanisms between species in the wine environment.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00615-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36267386","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 6
Draft Genome Sequence of Mycoplasma arginini Strain NGR_2017. 精氨酸支原体NGR_2017基因组序列草图
Genome Announcements Pub Date : 2018-06-28 DOI: 10.1128/genomeA.00577-18
J A Adeniji, T O C Faleye, O M Adewumi, O A Olayinka, E Donbraye, B Oluremi, U E George, O A Arowolo, E C Omoruyi, M I Ifeorah, A Akande
{"title":"Draft Genome Sequence of Mycoplasma arginini Strain NGR_2017.","authors":"J A Adeniji,&nbsp;T O C Faleye,&nbsp;O M Adewumi,&nbsp;O A Olayinka,&nbsp;E Donbraye,&nbsp;B Oluremi,&nbsp;U E George,&nbsp;O A Arowolo,&nbsp;E C Omoruyi,&nbsp;M I Ifeorah,&nbsp;A Akande","doi":"10.1128/genomeA.00577-18","DOIUrl":"https://doi.org/10.1128/genomeA.00577-18","url":null,"abstract":"<p><p>We present the draft genome of <i>Mycoplasma arginini</i> strain NGR_2017. This strain was recovered in Nigeria from cell culture in 2017. The assembly contains 620,555 bp in 12 contigs. It contains 561 coding sequences, 34 RNAs (29 tRNAs, 4 rRNAs, and 1 transfer-messenger RNA [tmRNA]), and a >26-kb integrative and conjugative element.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00577-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36267504","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Draft Genome Sequences of Six Skin Isolates of Streptococcus pyogenes. 6株皮肤产化脓性链球菌基因组序列草图。
Genome Announcements Pub Date : 2018-06-28 DOI: 10.1128/genomeA.00592-18
Zhong Liang, Melissa Stephens, Victoria A Ploplis, Shaun W Lee, Francis J Castellino
{"title":"Draft Genome Sequences of Six Skin Isolates of Streptococcus pyogenes.","authors":"Zhong Liang,&nbsp;Melissa Stephens,&nbsp;Victoria A Ploplis,&nbsp;Shaun W Lee,&nbsp;Francis J Castellino","doi":"10.1128/genomeA.00592-18","DOIUrl":"https://doi.org/10.1128/genomeA.00592-18","url":null,"abstract":"<p><p>Whole-genome shotgun sequences and bottom-up assembly of contigs of six skin isolates of <i>Streptococcus pyogenes</i>, <i>viz</i>, NS88.3 (<i>emm</i>98.1), NS223 (<i>emm</i>91), NS455 (<i>emm</i>52), SS1448 (<i>emm</i>86.2), SS1572 (<i>emm</i>223), and SS1574 (<i>emm</i>224), are presented here. All contigs were annotated, and the gene arrangements and the inferred proteins were consistent with a pattern D classification.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00592-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36267508","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
High-Quality Genome Sequence of the Root-Knot Nematode Meloidogyne arenaria Genotype A2-O. 根结线虫A2-O基因型的高质量基因组序列分析。
Genome Announcements Pub Date : 2018-06-28 DOI: 10.1128/genomeA.00519-18
Kazuki Sato, Yasuhiro Kadota, Pamela Gan, Takahiro Bino, Taketo Uehara, Katsushi Yamaguchi, Yasunori Ichihashi, Noriko Maki, Hideaki Iwahori, Takamasa Suzuki, Shuji Shigenobu, Ken Shirasu
{"title":"High-Quality Genome Sequence of the Root-Knot Nematode Meloidogyne arenaria Genotype A2-O.","authors":"Kazuki Sato,&nbsp;Yasuhiro Kadota,&nbsp;Pamela Gan,&nbsp;Takahiro Bino,&nbsp;Taketo Uehara,&nbsp;Katsushi Yamaguchi,&nbsp;Yasunori Ichihashi,&nbsp;Noriko Maki,&nbsp;Hideaki Iwahori,&nbsp;Takamasa Suzuki,&nbsp;Shuji Shigenobu,&nbsp;Ken Shirasu","doi":"10.1128/genomeA.00519-18","DOIUrl":"https://doi.org/10.1128/genomeA.00519-18","url":null,"abstract":"<p><p>Root-knot nematodes (<i>Meloidogyne</i> spp.) cause serious damage to many crops globally. We report the high-quality genome sequence of <i>Meloidogyne arenaria</i> genotype A2-O. The genome assembly of <i>M. arenaria</i> A2-O is composed of 2,224 contigs with an <i>N</i><sub>50</sub> contig length of 204,551 bp and a total assembly length of 284.05 Mb.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00519-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36268137","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 19
Complete Genome Sequence of Acinetobacter schindleri SGAir0122 Isolated from Singapore Air. 新加坡航空辛德勒不动杆菌SGAir0122的全基因组序列分析。
Genome Announcements Pub Date : 2018-06-28 DOI: 10.1128/genomeA.00567-18
Carmon Kee, Ana Carolina M Junqueira, Akira Uchida, Rikky W Purbojati, James N I Houghton, Caroline Chénard, Anthony Wong, Megan E Clare, Kavita K Kushwaha, Deepa Panicker, Alexander Putra, Nicolas E Gaultier, Balakrishnan N V Premkrishnan, Cassie E Heinle, Vineeth Kodengil Vettath, Daniela I Drautz-Moses, Stephan C Schuster
{"title":"Complete Genome Sequence of Acinetobacter schindleri SGAir0122 Isolated from Singapore Air.","authors":"Carmon Kee,&nbsp;Ana Carolina M Junqueira,&nbsp;Akira Uchida,&nbsp;Rikky W Purbojati,&nbsp;James N I Houghton,&nbsp;Caroline Chénard,&nbsp;Anthony Wong,&nbsp;Megan E Clare,&nbsp;Kavita K Kushwaha,&nbsp;Deepa Panicker,&nbsp;Alexander Putra,&nbsp;Nicolas E Gaultier,&nbsp;Balakrishnan N V Premkrishnan,&nbsp;Cassie E Heinle,&nbsp;Vineeth Kodengil Vettath,&nbsp;Daniela I Drautz-Moses,&nbsp;Stephan C Schuster","doi":"10.1128/genomeA.00567-18","DOIUrl":"https://doi.org/10.1128/genomeA.00567-18","url":null,"abstract":"<p><p><i>Acinetobacter schindleri</i> strain SGAir0122 was isolated from tropical air samples collected in Singapore. The prevalence of nosocomial infection caused by this Gram-negative bacterium indicates its clinical significance as an opportunistic human pathogen. Its complete genome consists of one chromosome of 3.105 Mb and a plasmid of 181 kb.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00567-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36268142","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
Draft Genome Sequences of Chryseobacterium lactis NCTC11390T Isolated from Milk, Chryseobacterium oncorhynchi 701B-08T from Rainbow Trout, and Chryseobacterium viscerum 687B-08T from Diseased Fish. 乳汁中乳酸黄杆菌NCTC11390T、虹鳟中oncorhynchi黄细菌701B-08T、病鱼中内脏黄细菌687B-08T的基因组序列绘制
Genome Announcements Pub Date : 2018-06-28 DOI: 10.1128/genomeA.00628-18
Jin-Ju Jeong, Ye Ji Lee, Duleepa Pathiraja, Byeonghyeok Park, In-Geol Choi, Ki Deok Kim
{"title":"Draft Genome Sequences of Chryseobacterium lactis NCTC11390<sup>T</sup> Isolated from Milk, Chryseobacterium oncorhynchi 701B-08<sup>T</sup> from Rainbow Trout, and Chryseobacterium viscerum 687B-08<sup>T</sup> from Diseased Fish.","authors":"Jin-Ju Jeong,&nbsp;Ye Ji Lee,&nbsp;Duleepa Pathiraja,&nbsp;Byeonghyeok Park,&nbsp;In-Geol Choi,&nbsp;Ki Deok Kim","doi":"10.1128/genomeA.00628-18","DOIUrl":"https://doi.org/10.1128/genomeA.00628-18","url":null,"abstract":"<p><p>The genus <i>Chryseobacterium</i>, belonging to the family <i>Flavobacteriaceae</i>, contains Gram-negative, yellow-pigmented, rod-shaped, and non-spore-forming bacterial species, which may be free living or parasitic. Here, we report draft genome sequences of type strains of three species of <i>Chryseobacterium</i> containing genes related to biological control and plant growth promotion.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00628-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36268469","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 6
Complete Genome Sequences of Four Salmonella enterica subsp. enterica Serovar Senftenberg and Montevideo Isolates Associated with a 2016 Multistate Outbreak in the United States. 四种肠沙门氏菌亚种的全基因组序列。Senftenberg和Montevideo分离菌与2016年美国多州爆发有关。
Genome Announcements Pub Date : 2018-06-28 DOI: 10.1128/genomeA.00630-18
Julie Haendiges, Tyann Blessington, Jie Zheng, Gordon Davidson, Jesse D Miller, Maria Hoffmann
{"title":"Complete Genome Sequences of Four Salmonella enterica subsp. enterica Serovar Senftenberg and Montevideo Isolates Associated with a 2016 Multistate Outbreak in the United States.","authors":"Julie Haendiges,&nbsp;Tyann Blessington,&nbsp;Jie Zheng,&nbsp;Gordon Davidson,&nbsp;Jesse D Miller,&nbsp;Maria Hoffmann","doi":"10.1128/genomeA.00630-18","DOIUrl":"https://doi.org/10.1128/genomeA.00630-18","url":null,"abstract":"<p><p>A multistate outbreak of 11 <i>Salmonella</i> infections linked to pistachio nuts occurred in 2016. In this announcement, we report the complete genome sequences of four <i>Salmonella enterica</i> subsp. <i>enterica</i> serovar Senftenberg and <i>S. enterica</i> subsp. <i>enterica</i> serovar Montevideo isolates from pistachios collected during the 2016 outbreak investigation.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00630-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36268470","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 6
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