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Closed Genome Sequence of Clostridium botulinum Strain CFSAN064329 (62A). 肉毒梭菌CFSAN064329 (62A)基因组封闭序列。
Genome Announcements Pub Date : 2018-06-28 DOI: 10.1128/genomeA.00528-18
Travis G Wentz, Kuan Yao, Kristin M Schill, N Rukma Reddy, Guy E Skinner, Travis R Morrissey, Yun Wang, Tim Muruvanda, Gowri Manickam, Christine A Pillai, Nagarajan Thirunavukkarasu, Maria Hoffmann, Thomas S Hammack, Eric W Brown, Marc W Allard, Shashi K Sharma
{"title":"Closed Genome Sequence of Clostridium botulinum Strain CFSAN064329 (62A).","authors":"Travis G Wentz,&nbsp;Kuan Yao,&nbsp;Kristin M Schill,&nbsp;N Rukma Reddy,&nbsp;Guy E Skinner,&nbsp;Travis R Morrissey,&nbsp;Yun Wang,&nbsp;Tim Muruvanda,&nbsp;Gowri Manickam,&nbsp;Christine A Pillai,&nbsp;Nagarajan Thirunavukkarasu,&nbsp;Maria Hoffmann,&nbsp;Thomas S Hammack,&nbsp;Eric W Brown,&nbsp;Marc W Allard,&nbsp;Shashi K Sharma","doi":"10.1128/genomeA.00528-18","DOIUrl":"https://doi.org/10.1128/genomeA.00528-18","url":null,"abstract":"<p><p><i>Clostridium botulinum</i> is a strictly anaerobic, Gram-positive, spore-forming bacterium that produces botulinum neurotoxin, a potent and deadly proteinaceous exotoxin. <i>Clostridium botulinum</i> strain CFSAN064329 (62A) produces an A1 serotype/subtype botulinum neurotoxin and is frequently utilized in food challenge and detection studies. We report here the closed genome sequence of <i>Clostridium botulinum</i> strain CFSAN064329 (62A).</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00528-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36268138","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Whole-Genome Shotgun Sequencing of Three Listeria monocytogenes Strains Isolated from a Ready-to-Eat Salad-Producing Facility in Switzerland. 对从瑞士一家即食沙拉生产企业分离出的三种李斯特菌株进行全基因组射枪测序。
Genome Announcements Pub Date : 2018-06-28 DOI: 10.1128/genomeA.00547-18
Matthias Ziegler, Hyein Jang, Gopal Gopinath, Jule Anna Horlbog, Roger Stephan, Claudia Guldimann
{"title":"Whole-Genome Shotgun Sequencing of Three Listeria monocytogenes Strains Isolated from a Ready-to-Eat Salad-Producing Facility in Switzerland.","authors":"Matthias Ziegler, Hyein Jang, Gopal Gopinath, Jule Anna Horlbog, Roger Stephan, Claudia Guldimann","doi":"10.1128/genomeA.00547-18","DOIUrl":"10.1128/genomeA.00547-18","url":null,"abstract":"<p><p>Ready-to-eat (RTE) raw foods harbor the risk of transmitting <i>Listeria monocytogenes</i> from the environment to the consumer. We isolated three strains from a facility producing RTE salad. These strains were used to perform challenge tests on different RTE salad products. Here, we present the shotgun genome sequences of all three of these strains.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6025945/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36268140","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Fifty-Six Draft Genome Sequences of 10 Lactobacillus Species from 22 Commercial Dietary Supplements. 22种商业膳食补充剂中10种乳酸菌56个基因组序列草图
Genome Announcements Pub Date : 2018-06-28 DOI: 10.1128/genomeA.00621-18
Jayanthi Gangiredla, Tammy J Barnaba, Mark K Mammel, David W Lacher, Christopher A Elkins, Keith A Lampel, Chris A Whitehouse, Carmen Tartera
{"title":"Fifty-Six Draft Genome Sequences of 10 Lactobacillus Species from 22 Commercial Dietary Supplements.","authors":"Jayanthi Gangiredla,&nbsp;Tammy J Barnaba,&nbsp;Mark K Mammel,&nbsp;David W Lacher,&nbsp;Christopher A Elkins,&nbsp;Keith A Lampel,&nbsp;Chris A Whitehouse,&nbsp;Carmen Tartera","doi":"10.1128/genomeA.00621-18","DOIUrl":"https://doi.org/10.1128/genomeA.00621-18","url":null,"abstract":"<p><p>Here, we present the genome sequences of 56 isolates of 10 species of the genus <i>Lactobacillus</i> that are considered beneficial components of the gut microbiota. The isolates examined were found in commercially available dietary supplements in the U.S. market.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00621-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36268465","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Genome Sequence of Staphylococcus aureus Ex1, Isolated from a Patient with Spinal Osteomyelitis. 从脊柱骨髓炎患者分离的金黄色葡萄球菌Ex1的基因组序列。
Genome Announcements Pub Date : 2018-06-28 DOI: 10.1128/genomeA.00623-18
Helen Morcrette, Marina S Morgan, Audrey Farbos, Paul O'Neill, Karen Moore, Richard W Titball, David J Studholme
{"title":"Genome Sequence of Staphylococcus aureus Ex1, Isolated from a Patient with Spinal Osteomyelitis.","authors":"Helen Morcrette,&nbsp;Marina S Morgan,&nbsp;Audrey Farbos,&nbsp;Paul O'Neill,&nbsp;Karen Moore,&nbsp;Richard W Titball,&nbsp;David J Studholme","doi":"10.1128/genomeA.00623-18","DOIUrl":"https://doi.org/10.1128/genomeA.00623-18","url":null,"abstract":"<p><p>Here, we present the genome sequence of <i>Staphylococcus aureus</i> Ex1, isolated in 2015 from a patient with spinal osteomyelitis at the Royal Devon and Exeter Hospital in the United Kingdom. The availability of the Ex1 genome sequence provides a resource for studying the basis for spinal infection and horizontal gene transfer in <i>S. aureus</i>.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00623-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36268467","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Draft Genome Sequences of Two Edwardsiella piscicida Strains, JF1307 and JF1411, Isolated from Diseased Olive Flounder (Paralichthys olivaceus) Cultured in Japan. 病橄榄比目鱼JF1307和JF1411两株鱼用爱德华氏菌基因组序列草图
Genome Announcements Pub Date : 2018-06-28 DOI: 10.1128/genomeA.00600-18
Hidehiro Sugiura, Shinya Monno, Hazuki Yamashita, Yusuke Kato, Masayuki Imajoh
{"title":"Draft Genome Sequences of Two Edwardsiella piscicida Strains, JF1307 and JF1411, Isolated from Diseased Olive Flounder (Paralichthys olivaceus) Cultured in Japan.","authors":"Hidehiro Sugiura,&nbsp;Shinya Monno,&nbsp;Hazuki Yamashita,&nbsp;Yusuke Kato,&nbsp;Masayuki Imajoh","doi":"10.1128/genomeA.00600-18","DOIUrl":"https://doi.org/10.1128/genomeA.00600-18","url":null,"abstract":"<p><p><i>Edwardsiella piscicida</i> strains JF1307 and JF1411 were isolated from cultured olive flounder that were diagnosed as being infected with edwardsiellosis. The draft genome sequences of the two isolates comprise 3,882,000 bp and 3,827,424 bp with G+C contents of 59.5% and 59.6%, respectively.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00600-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36267380","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Draft Genome Sequence of Bacillus altitudinis Lc5, a Biocontrol and Plant Growth-Promoting Endophyte Strain Isolated from Indigenous Black Rice of Manipur. 曼尼普尔黑米拮抗植物生长内生菌株高海拔芽孢杆菌Lc5的基因组序列
Genome Announcements Pub Date : 2018-06-28 DOI: 10.1128/genomeA.00601-18
Momota Potshangbam, Dinabandhu Sahoo, Preveen Verma, Sandhya Verma, Mohan Chandra Kalita, Sarangthem Indira Devi
{"title":"Draft Genome Sequence of Bacillus altitudinis Lc5, a Biocontrol and Plant Growth-Promoting Endophyte Strain Isolated from Indigenous Black Rice of Manipur.","authors":"Momota Potshangbam,&nbsp;Dinabandhu Sahoo,&nbsp;Preveen Verma,&nbsp;Sandhya Verma,&nbsp;Mohan Chandra Kalita,&nbsp;Sarangthem Indira Devi","doi":"10.1128/genomeA.00601-18","DOIUrl":"https://doi.org/10.1128/genomeA.00601-18","url":null,"abstract":"<p><p>We report here the 3.6-Mb draft genome of <i>Bacillus altitudinis</i> Lc5, a potential plant growth promoter and an active antagonistic endophyte of black rice. This genome study will provide better insights into the strain's mechanisms for plant growth promotion and biocontrol, thus facilitating its application in organic agriculture.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00601-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36267381","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 12
Complete Genome Sequences of Two T4-Like Escherichia coli Bacteriophages. 两个t4样大肠杆菌噬菌体的全基因组序列。
Genome Announcements Pub Date : 2018-06-28 DOI: 10.1128/genomeA.00586-18
Ana Rita Costa, Stan J J Brouns, Franklin L Nobrega
{"title":"Complete Genome Sequences of Two T4-Like Escherichia coli Bacteriophages.","authors":"Ana Rita Costa,&nbsp;Stan J J Brouns,&nbsp;Franklin L Nobrega","doi":"10.1128/genomeA.00586-18","DOIUrl":"https://doi.org/10.1128/genomeA.00586-18","url":null,"abstract":"<p><p>Bacteriophages and their proteins have potential applications in biotechnology for the detection and control of bacterial diseases. Here, we describe the sequencing and genome annotations of two strictly virulent <i>Escherichia coli</i> bacteriophages that may be explored for biocontrol strategies and to expand the understanding of phage-host interactions.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00586-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36267507","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Full-Length Genome Sequence of a Sindbis Virus Strain Isolated from Culex cinereus in 1977 in Bozo, Central African Republic. 1977年中非共和国博佐市从灰库蚊中分离出的Sindbis病毒株全基因组序列。
Genome Announcements Pub Date : 2018-06-28 DOI: 10.1128/genomeA.00455-18
Rita C Sem Ouilibona, Huguette D Tchetgna Simo, Ulrich Vickos, Nicolas Berthet, Emmanuel Nakouné
{"title":"Full-Length Genome Sequence of a Sindbis Virus Strain Isolated from Culex cinereus in 1977 in Bozo, Central African Republic.","authors":"Rita C Sem Ouilibona,&nbsp;Huguette D Tchetgna Simo,&nbsp;Ulrich Vickos,&nbsp;Nicolas Berthet,&nbsp;Emmanuel Nakouné","doi":"10.1128/genomeA.00455-18","DOIUrl":"https://doi.org/10.1128/genomeA.00455-18","url":null,"abstract":"<p><p>We report here the complete genome sequence of a Sindbis virus (SINV) strain, ArB7761, isolated in 1977 in the Central African Republic. This strain, closely related to the Babanki virus, belongs to the SINV genotype I clade. However, it differs from the Egyptian prototype strain AR339 by several indels in the nsP3 gene.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00455-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36268134","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Draft Genome Sequence of a White Spot Syndrome Virus Isolate Obtained in Ecuador. 厄瓜多尔获得的白斑综合征病毒分离物基因组序列草图。
Genome Announcements Pub Date : 2018-06-28 DOI: 10.1128/genomeA.00605-18
Leda Restrepo, Alejandro Reyes, Leandro Bajaña, Irma Betancourt, Bonny Bayot
{"title":"Draft Genome Sequence of a White Spot Syndrome Virus Isolate Obtained in Ecuador.","authors":"Leda Restrepo,&nbsp;Alejandro Reyes,&nbsp;Leandro Bajaña,&nbsp;Irma Betancourt,&nbsp;Bonny Bayot","doi":"10.1128/genomeA.00605-18","DOIUrl":"https://doi.org/10.1128/genomeA.00605-18","url":null,"abstract":"<p><p>White spot syndrome virus (WSSV) is the most devastating viral disease affecting cultivated shrimp around the world. Currently, there is no reported genetic information on WSSV affecting <i>Penaeus vannamei</i> in Ecuador. Therefore, we determined the genome of a WSSV isolate from shrimp and compared it with the genomes of isolates from other geographical locations.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00605-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36267382","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 12
Draft Genome Sequence of the Antimicrobial-Producing Strain Paenibacillus elgii AC13. 产抗菌素菌株 Paenibacillus elgii AC13 的基因组序列草案。
Genome Announcements Pub Date : 2018-06-28 DOI: 10.1128/genomeA.00573-18
Daniel Barros Ortega, Rosiane Andrade Costa, Allan Silva Pires, Thiago Fellipe Araújo, Janaina Fernandez Araújo, Adriane Silva Kurokawa, Beatriz Simas Magalhães, Alessandra Maria Moreira Reis, Octávio Luís Franco, Ricardo Henrique Kruger, Georgios Joannis Pappas, Cristine Chaves Barreto
{"title":"Draft Genome Sequence of the Antimicrobial-Producing Strain Paenibacillus elgii AC13.","authors":"Daniel Barros Ortega, Rosiane Andrade Costa, Allan Silva Pires, Thiago Fellipe Araújo, Janaina Fernandez Araújo, Adriane Silva Kurokawa, Beatriz Simas Magalhães, Alessandra Maria Moreira Reis, Octávio Luís Franco, Ricardo Henrique Kruger, Georgios Joannis Pappas, Cristine Chaves Barreto","doi":"10.1128/genomeA.00573-18","DOIUrl":"10.1128/genomeA.00573-18","url":null,"abstract":"<p><p>A <i>Paenibacillus elgii</i> strain isolated from soil samples from Cerrado, Brazil, showed antimicrobial activity. Its genome sequence was acquired (GS20 FLX Titanium 454 platform) and comprises 108 contigs (<i>N</i><sub>50</sub>, 198,427 bp) and 6,810 predicted sequences. Here, we shed some light on the antimicrobial genes of the strain, including a nonribosomal peptide synthetase (NRPS) module identified as part of a pelgipeptin gene cluster.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6025928/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36267502","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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