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Recovery of Five Complete Influenza A(H1N1)pdm09 Genome Sequences from the 2015 Influenza Outbreak in India by Metagenomic Sequencing. 从2015年印度流感爆发中恢复5个完整的甲型H1N1流感pdm09基因组序列
Genome Announcements Pub Date : 2018-06-28 DOI: 10.1128/genomeA.00511-18
Paban Kumar Dash, Chitra Pattabiraman, Kundan Tandel, Shashi Sharma, Jyoti S Kumar, Shilpa Siddappa, Malali Gowda, Sudhir Krishna, Manmohan Parida
{"title":"Recovery of Five Complete Influenza A(H1N1)pdm09 Genome Sequences from the 2015 Influenza Outbreak in India by Metagenomic Sequencing.","authors":"Paban Kumar Dash,&nbsp;Chitra Pattabiraman,&nbsp;Kundan Tandel,&nbsp;Shashi Sharma,&nbsp;Jyoti S Kumar,&nbsp;Shilpa Siddappa,&nbsp;Malali Gowda,&nbsp;Sudhir Krishna,&nbsp;Manmohan Parida","doi":"10.1128/genomeA.00511-18","DOIUrl":"https://doi.org/10.1128/genomeA.00511-18","url":null,"abstract":"<p><p>Five complete (H1N1)pdm09 viral sequences were recovered from hospitalized individuals during the 2015 influenza outbreak by metagenomic sequencing. Four of the genomes are from oropharyngeal swabs, and one is from an isolate. All five sequences belong to an emerging 6B clade. Studying them further is critical for outbreak preparedness.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00511-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36268136","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Complete Draft Genome Sequence of an Extended-Spectrum β-Lactamase-Producing Citrobacter freundii Strain Recovered from the Intestine of a House Sparrow (Passer domesticus) in Germany, 2017. 德国家雀肠道产β-内酰胺酶柠檬酸杆菌全基因组序列草图，2017。
Genome Announcements Pub Date : 2018-06-28 DOI: 10.1128/genomeA.00599-18
Valerie Osieka, Mirjam Grobbel, Silvia Schmoger, Claudia A Szentiks, Alexandra Irrgang, Annemarie Käsbohrer, Bernd-Alois Tenhagen, Jens A Hammerl
{"title":"Complete Draft Genome Sequence of an Extended-Spectrum β-Lactamase-Producing Citrobacter freundii Strain Recovered from the Intestine of a House Sparrow (Passer domesticus) in Germany, 2017.","authors":"Valerie Osieka,&nbsp;Mirjam Grobbel,&nbsp;Silvia Schmoger,&nbsp;Claudia A Szentiks,&nbsp;Alexandra Irrgang,&nbsp;Annemarie Käsbohrer,&nbsp;Bernd-Alois Tenhagen,&nbsp;Jens A Hammerl","doi":"10.1128/genomeA.00599-18","DOIUrl":"https://doi.org/10.1128/genomeA.00599-18","url":null,"abstract":"<p><p>Here, we announce the genome of an extended-spectrum β-lactamase-producing <i>Citrobacter freundii</i> strain isolated from the cecum of a house sparrow that was found dead in Berlin-Lichtenberg, Germany, in 2017. This isolate exhibits increased MICs for several antimicrobials and a comprehensive set of acquired resistance determinants potentially involved in horizontal gene transfer.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00599-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36267379","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
Complete Genome Sequence of the Novel Virulent Phage PMBT28 with Lytic Activity against Thermotolerant Salmonella enterica subsp. enterica Serovar Senftenberg ATCC 43845. 具有抗耐热肠沙门氏菌亚种裂解活性的新型噬菌体PMBT28的全基因组序列enterica Serovar Senftenberg ATCC 43845
Genome Announcements Pub Date : 2018-06-28 DOI: 10.1128/genomeA.00568-18
Sabrina Koberg, Erik Brinks, Viktoria Albrecht, Horst Neve, Charles M A P Franz
{"title":"Complete Genome Sequence of the Novel Virulent Phage PMBT28 with Lytic Activity against Thermotolerant Salmonella enterica subsp. enterica Serovar Senftenberg ATCC 43845.","authors":"Sabrina Koberg,&nbsp;Erik Brinks,&nbsp;Viktoria Albrecht,&nbsp;Horst Neve,&nbsp;Charles M A P Franz","doi":"10.1128/genomeA.00568-18","DOIUrl":"https://doi.org/10.1128/genomeA.00568-18","url":null,"abstract":"<p><p>The complete genome sequence of the novel virulent <i>Siphoviridae</i> phage PMBT28, which may potentially be utilized for the biocontrol of <i>Salmonella</i> spp., is reported here. The phage was isolated using <i>Salmonella enterica</i> subsp. <i>enterica</i> serovar Senftenberg ATCC 43845 as a bacterial host. The genome had no significant sequence similarity to known phage genomes.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00568-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36267501","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
Complete Genome Sequences of a Diverse Group of 13 Propionibacterium acnes Bacteriophages Isolated from Urban Raw Sewage. 从城市原始污水中分离的13个不同群的痤疮丙酸杆菌噬菌体的全基因组序列。
Genome Announcements Pub Date : 2018-06-28 DOI: 10.1128/genomeA.00224-18
Gustavo Ybazeta, Jenna Graham, Jelena Trifkovic, Lyne Giroux, Mazen Saleh, Syed A Sattar, Reza Nokhbeh
{"title":"Complete Genome Sequences of a Diverse Group of 13 Propionibacterium acnes Bacteriophages Isolated from Urban Raw Sewage.","authors":"Gustavo Ybazeta,&nbsp;Jenna Graham,&nbsp;Jelena Trifkovic,&nbsp;Lyne Giroux,&nbsp;Mazen Saleh,&nbsp;Syed A Sattar,&nbsp;Reza Nokhbeh","doi":"10.1128/genomeA.00224-18","DOIUrl":"https://doi.org/10.1128/genomeA.00224-18","url":null,"abstract":"<p><p>We present complete genome sequences of 13 <i>Propionibacterium acnes</i> phages isolated from urban raw sewage. They belong to the family <i>Siphoviridae</i>, have genome sizes of 29,450.6 ± 256.5 nucleotides and G+C contents of 54.14% ± 0.22% and contain 42 to 45 coding DNA sequences (CDS). Genomic sequences of 9 of 13 phages were divergent by 6 to 10%, distinguishing them as species.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00224-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36266576","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Whole-Genome Sequence of Salmonella enterica subsp. enterica Serovar Typhimurium Strain WG49 and Escherichia coli Strain WG5 Used in South Africa for Phage Detection in Water Samples. 肠炎沙门氏菌亚种的全基因组序列。南非水样中噬菌体检测的肠道血清型鼠伤寒杆菌菌株WG49和大肠杆菌菌株WG5
Genome Announcements Pub Date : 2018-06-28 DOI: 10.1128/genomeA.00372-18
L Bothma, D Gonzalez-Ibeas, C Mienie, C C Bezuidenhout, R Adeleke
{"title":"Whole-Genome Sequence of Salmonella enterica subsp. enterica Serovar Typhimurium Strain WG49 and Escherichia coli Strain WG5 Used in South Africa for Phage Detection in Water Samples.","authors":"L Bothma,&nbsp;D Gonzalez-Ibeas,&nbsp;C Mienie,&nbsp;C C Bezuidenhout,&nbsp;R Adeleke","doi":"10.1128/genomeA.00372-18","DOIUrl":"https://doi.org/10.1128/genomeA.00372-18","url":null,"abstract":"<p><p><i>Salmonella enterica</i> subsp. <i>enterica</i> serovar Typhimurium WG49 is widely used for enumeration of F-specific RNA (F-RNA) coliphages in water. <i>Escherichia coli</i> WG5 is broadly used for the detection and enumeration of somatic coliphages in water samples. We report here the genome sequences of these bacterial strains used in South Africa under ISO methods 10705-1 and 10705-2.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00372-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36268132","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Complete Genome Sequences of Two Chikungunya Viruses Imported into China. 输入中国的两种基孔肯雅病毒全基因组序列分析。
Genome Announcements Pub Date : 2018-06-28 DOI: 10.1128/genomeA.00480-18
Xiaomin Zhang, Yalan Huang, Miao Wang, Fan Yang, Jinquan Cheng, Chengsong Wan, Renli Zhang
{"title":"Complete Genome Sequences of Two Chikungunya Viruses Imported into China.","authors":"Xiaomin Zhang,&nbsp;Yalan Huang,&nbsp;Miao Wang,&nbsp;Fan Yang,&nbsp;Jinquan Cheng,&nbsp;Chengsong Wan,&nbsp;Renli Zhang","doi":"10.1128/genomeA.00480-18","DOIUrl":"https://doi.org/10.1128/genomeA.00480-18","url":null,"abstract":"<p><p>Here, we isolated two chikungunya virus strains (SZ1050 and SZ1239) from patients infected with chikungunya virus who were returning to China from India and Indonesia, respectively. Strain SZ1050 was classed in the Indian Ocean lineage, and strain SZ1239 belonged to the Asian lineage. No A226V mutation in the envelope protein E1 was found in either strain.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00480-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36268135","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Complete Genome Sequence of a Bluetongue Virus Serotype 15 Strain Isolated from China in 1996. 1996年中国分离的15型蓝舌病病毒全基因组序列分析。
Genome Announcements Pub Date : 2018-06-28 DOI: 10.1128/genomeA.00557-18
Defang Liao, Heng Yang, Lei Xiao, Jianbo Zhu, Jinpin Wang, Zhanhong Li, Nianzu Zhang, Huachun Li
{"title":"Complete Genome Sequence of a Bluetongue Virus Serotype 15 Strain Isolated from China in 1996.","authors":"Defang Liao,&nbsp;Heng Yang,&nbsp;Lei Xiao,&nbsp;Jianbo Zhu,&nbsp;Jinpin Wang,&nbsp;Zhanhong Li,&nbsp;Nianzu Zhang,&nbsp;Huachun Li","doi":"10.1128/genomeA.00557-18","DOIUrl":"https://doi.org/10.1128/genomeA.00557-18","url":null,"abstract":"<p><p>The full-genome sequence of bluetongue virus serotype 15 (BTV-15) strain B105/YN/1996 isolated in China was determined for the first time. The virus was isolated from sentinel cattle in Yunnan Province, China, in 1996. The total size of the BTV-15 strain B105/YN/1996 genome is 19,161 bp in length. Phylogenetic analyses demonstrate that it belongs to the major eastern BTV topotype. This work is the first to document the complete genomic sequence of a BTV-15 strain from China. The sequence information will help determine the geographic origin of Chinese BTV-15 and provide data to facilitate future analyses of the genetic diversity and phylogenetic relationships of BTV strains.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00557-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36268141","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Draft Genome Sequences of Bifidobacterium Strains Isolated from Dietary Supplements and Cultured Food Products. 膳食补充剂和培养食品中双歧杆菌菌株基因组序列草图。
Genome Announcements Pub Date : 2018-06-28 DOI: 10.1128/genomeA.00610-18
Tammy J Barnaba, Jayanthi Gangiredla, Mark K Mammel, David W Lacher, Christopher A Elkins, Keith A Lampel, Chris A Whitehouse, Carmen Tartera
{"title":"Draft Genome Sequences of Bifidobacterium Strains Isolated from Dietary Supplements and Cultured Food Products.","authors":"Tammy J Barnaba,&nbsp;Jayanthi Gangiredla,&nbsp;Mark K Mammel,&nbsp;David W Lacher,&nbsp;Christopher A Elkins,&nbsp;Keith A Lampel,&nbsp;Chris A Whitehouse,&nbsp;Carmen Tartera","doi":"10.1128/genomeA.00610-18","DOIUrl":"https://doi.org/10.1128/genomeA.00610-18","url":null,"abstract":"<p><p>Here, we present the genome sequences of 23 <i>Bifidobacterium</i> isolates from several commercially available dietary supplements and cultured food products. Strains of this genus are natural inhabitants of the mammalian mouth, gastrointestinal tract, and vagina. Some species are considered beneficial to human health.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00610-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36267383","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genome Sequences of Five Lactobacillus sp. Isolates from Traditional Turkish Sourdough. 传统土耳其酵母中5株乳杆菌的基因组序列分析。
Genome Announcements Pub Date : 2018-06-28 DOI: 10.1128/genomeA.00616-18
Enes Dertli, Christopher D Skory, Ömer Şimşek
{"title":"Genome Sequences of Five Lactobacillus sp. Isolates from Traditional Turkish Sourdough.","authors":"Enes Dertli,&nbsp;Christopher D Skory,&nbsp;Ömer Şimşek","doi":"10.1128/genomeA.00616-18","DOIUrl":"https://doi.org/10.1128/genomeA.00616-18","url":null,"abstract":"<p><p>A high level of variation in microflora can be observed in profiles of lactic acid bacteria (LAB) from sourdoughs. Here, we present draft genome sequences of <i>Lactobacillus reuteri</i> E81, <i>L. reuteri</i> LR5A, <i>L. rhamnosus</i> LR2, <i>L. plantarum</i> PFC-311, and the novel <i>Lactobacillus</i> sp. strain PFC-70, isolated from traditional Turkish backslopped wheat sourdoughs.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00616-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36267387","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 6
Complete Genome Sequence of an Avian Native NDM-1-Producing Salmonella enterica subsp. enterica Serovar Corvallis Strain. 一株产肠道沙门氏菌NDM-1的禽类全基因组序列。肠炎Corvallis血清型菌株。
Genome Announcements Pub Date : 2018-06-28 DOI: 10.1128/genomeA.00593-18
Sead Hadziabdic, Maria Borowiak, Angelina Bloch, Burkhard Malorny, Istvan Szabo, Beatriz Guerra, Annemarie Kaesbohrer, Jennie Fischer
{"title":"Complete Genome Sequence of an Avian Native NDM-1-Producing Salmonella enterica subsp. enterica Serovar Corvallis Strain.","authors":"Sead Hadziabdic,&nbsp;Maria Borowiak,&nbsp;Angelina Bloch,&nbsp;Burkhard Malorny,&nbsp;Istvan Szabo,&nbsp;Beatriz Guerra,&nbsp;Annemarie Kaesbohrer,&nbsp;Jennie Fischer","doi":"10.1128/genomeA.00593-18","DOIUrl":"10.1128/genomeA.00593-18","url":null,"abstract":"<p><p>Carbapenems are an important class of β-lactams and one of the last options for treating severe human infections. We present here the complete genome sequence of avian native carbapenemase-producing <i>Salmonella enterica</i> subsp. <i>enterica</i> serovar Corvallis strain 12-01738, harboring a <i>bla</i><sub>NDM-1</sub>-carrying IncA/C<sub>2</sub> plasmid, isolated in 2012 from a wild bird (<i>Milvus migrans</i>) in Germany.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 26","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00593-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36267509","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
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