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Complete Genome Sequence of Lactobacillus plantarum Strain LQ80, Selected for Preparation of Fermented Liquid Feed for Pigs. 猪发酵液体饲料植物乳杆菌LQ80全基因组序列研究
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00530-18
Naoko Moriya, Kazuma Nakano, Akino Shiroma, Misuzu Shinzato, Noriko Ashimine, Maiko Minami, Hinako Tamotsu, Makiko Shimoji, Tetsuhiro Nakanishi, Shun Ohki, Kuniko Teruya, Kazuhito Satou, Takashi Hirano, Tatsuro Hagi, Miho Kobayashi, Masaru Nomura, Hiromi Kimoto-Nira, Kiyoshi Tajima, Yimin Cai, Chise Suzuki
{"title":"Complete Genome Sequence of Lactobacillus plantarum Strain LQ80, Selected for Preparation of Fermented Liquid Feed for Pigs.","authors":"Naoko Moriya,&nbsp;Kazuma Nakano,&nbsp;Akino Shiroma,&nbsp;Misuzu Shinzato,&nbsp;Noriko Ashimine,&nbsp;Maiko Minami,&nbsp;Hinako Tamotsu,&nbsp;Makiko Shimoji,&nbsp;Tetsuhiro Nakanishi,&nbsp;Shun Ohki,&nbsp;Kuniko Teruya,&nbsp;Kazuhito Satou,&nbsp;Takashi Hirano,&nbsp;Tatsuro Hagi,&nbsp;Miho Kobayashi,&nbsp;Masaru Nomura,&nbsp;Hiromi Kimoto-Nira,&nbsp;Kiyoshi Tajima,&nbsp;Yimin Cai,&nbsp;Chise Suzuki","doi":"10.1128/genomeA.00530-18","DOIUrl":"https://doi.org/10.1128/genomeA.00530-18","url":null,"abstract":"<p><p><i>Lactobacillus plantarum</i> LQ80 is a strain isolated from liquid feed for pigs. We determined the complete genome sequence of this strain using the PacBio RS II platform. LQ80 contained a single circular chromosome of 3,230,192 bp, with 44.66% G+C content and seven plasmids.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00530-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36247039","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Genome Sequence of the Pseudomonas protegens Phage ΦGP100. 假单胞菌蛋白噬菌体基因组序列ΦGP100。
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00261-18
Jordan Vacheron, Peter Kupferschmied, Grégory Resch, Christoph Keel
{"title":"Genome Sequence of the Pseudomonas protegens Phage ΦGP100.","authors":"Jordan Vacheron,&nbsp;Peter Kupferschmied,&nbsp;Grégory Resch,&nbsp;Christoph Keel","doi":"10.1128/genomeA.00261-18","DOIUrl":"https://doi.org/10.1128/genomeA.00261-18","url":null,"abstract":"<p><p>We report here the complete annotated genome sequence of ΦGP100, a lytic bacteriophage of the <i>Podoviridae</i> family. ΦGP100 was isolated from rhizosphere soil in Switzerland and infects specifically strains of <i>Pseudomonas protegens</i> that are known for their plant-beneficial activities. Phage ΦGP100 has a 50,547-bp genome with 76 predicted open reading frames.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00261-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36247078","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Single Circular Chromosome Identified from the Genome Sequence of the Vibrio cholerae O1 bv. El Tor Ogawa Strain V060002. 霍乱弧菌o1bv基因组序列中单个环状染色体的鉴定。El Tor Ogawa菌株V060002。
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00564-18
Shouji Yamamoto, Ken-Ichi Lee, Masatomo Morita, Eiji Arakawa, Hidemasa Izumiya, Makoto Ohnishi
{"title":"Single Circular Chromosome Identified from the Genome Sequence of the Vibrio cholerae O1 bv. El Tor Ogawa Strain V060002.","authors":"Shouji Yamamoto,&nbsp;Ken-Ichi Lee,&nbsp;Masatomo Morita,&nbsp;Eiji Arakawa,&nbsp;Hidemasa Izumiya,&nbsp;Makoto Ohnishi","doi":"10.1128/genomeA.00564-18","DOIUrl":"https://doi.org/10.1128/genomeA.00564-18","url":null,"abstract":"<p><p>We report here the complete genome sequence of the <i>Vibrio cholerae</i> O1 bv. El Tor Ogawa strain V060002, isolated in 1997. The data demonstrate that this clinical strain has a single chromosome resulting from recombination of two prototypical chromosomes.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00564-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36245193","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 12
Draft Genome Sequences of Two Natural Isolates of the Yeast Barnettozyma californica from Ireland, UCD09 and UCD89. 爱尔兰加州巴内特酵母菌天然分离株UCD09和UCD89的基因组序列草图
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00548-18
Alisha A Mullen, Ciara D Lynch, Shannon M Hill, Cian P Holohan, Tadhg Ó Cróinín, Kenneth H Wolfe, Caoimhe E O'Brien, Geraldine Butler
{"title":"Draft Genome Sequences of Two Natural Isolates of the Yeast Barnettozyma californica from Ireland, UCD09 and UCD89.","authors":"Alisha A Mullen,&nbsp;Ciara D Lynch,&nbsp;Shannon M Hill,&nbsp;Cian P Holohan,&nbsp;Tadhg Ó Cróinín,&nbsp;Kenneth H Wolfe,&nbsp;Caoimhe E O'Brien,&nbsp;Geraldine Butler","doi":"10.1128/genomeA.00548-18","DOIUrl":"https://doi.org/10.1128/genomeA.00548-18","url":null,"abstract":"<p><p>No genome sequence of a species from <i>Barnettozyma</i>, a yeast genus in the family Phaffomycetaceae, is currently available. We isolated two <i>B. californica</i> strains from soils in Ireland and generated draft sequences of their 11.7-Mb genomes. Single nucleotide polymorphism (SNP) analysis showed 20,490 differences between the strains and suggests that <i>B. californica</i> is haploid.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00548-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36246408","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Draft Genome Sequence of Klebsiella sp. Strain C31 Isolated from a Malaysian Tropical Peat Swamp Forest. 马来西亚热带泥炭沼泽森林克雷伯氏菌C31株基因组序列草图
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00560-18
Chin Chin Too, Kuan Shion Ong, Markus J Ankenbrand, Sui Mae Lee, Catherine M Yule, Alexander Keller
{"title":"Draft Genome Sequence of Klebsiella sp. Strain C31 Isolated from a Malaysian Tropical Peat Swamp Forest.","authors":"Chin Chin Too,&nbsp;Kuan Shion Ong,&nbsp;Markus J Ankenbrand,&nbsp;Sui Mae Lee,&nbsp;Catherine M Yule,&nbsp;Alexander Keller","doi":"10.1128/genomeA.00560-18","DOIUrl":"https://doi.org/10.1128/genomeA.00560-18","url":null,"abstract":"<p><p>We report here the draft genome of <i>Klebsiella</i> sp. strain C31, a bacterial isolate from the North Selangor peat swamp forest in Malaysia. The putative genes for the biogeochemical processes of the genome were annotated and investigated.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00560-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36246857","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Sequencing and Annotation of the Genome of Mycobacterium tuberculosis MYC004, a Strain Causing Meningitis in Mexico. 墨西哥引起脑膜炎的结核分枝杆菌MYC004的基因组测序和注释。
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00523-18
Ana Laura Guillén-Nepita, Andrea Monserrat Negrete-Paz, Gerardo Vázquez-Marrufo, Andrés Cruz-Hernández, Pablo Fresia, Hugo Naya, Ma Soledad Vázquez-Garcidueñas
{"title":"Sequencing and Annotation of the Genome of Mycobacterium tuberculosis MYC004, a Strain Causing Meningitis in Mexico.","authors":"Ana Laura Guillén-Nepita,&nbsp;Andrea Monserrat Negrete-Paz,&nbsp;Gerardo Vázquez-Marrufo,&nbsp;Andrés Cruz-Hernández,&nbsp;Pablo Fresia,&nbsp;Hugo Naya,&nbsp;Ma Soledad Vázquez-Garcidueñas","doi":"10.1128/genomeA.00523-18","DOIUrl":"https://doi.org/10.1128/genomeA.00523-18","url":null,"abstract":"<p><p><i>Mycobacterium tuberculosis</i> strain MYC004 was isolated from a Mexican patient with tuberculous meningitis, the most aggressive form of tuberculosis. The draft genome sequence is the first of a meningeal strain of <i>M. tuberculosis</i> reported from Latin America and consists of 4,411,530 bp, including 4,251 protein-encoding genes.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00523-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36247035","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Draft Genome Sequence of a Divergent Anaerobic Member of the Chloroflexi Class Ardenticatenia from a Sulfidic Hot Spring. 硫化物温泉中一种不同厌氧菌(chloroflex Class Ardenticatenia)基因组序列草图。
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00571-18
L M Ward, S E McGlynn, W W Fischer
{"title":"Draft Genome Sequence of a Divergent Anaerobic Member of the <i>Chloroflexi</i> Class <i>Ardenticatenia</i> from a Sulfidic Hot Spring.","authors":"L M Ward,&nbsp;S E McGlynn,&nbsp;W W Fischer","doi":"10.1128/genomeA.00571-18","DOIUrl":"https://doi.org/10.1128/genomeA.00571-18","url":null,"abstract":"<p><p>Here, we present a draft genome sequence of Nak82, the second genome sequence available for the <i>Chloroflexi</i> class <i>Ardenticatenia</i> and the first from a sulfidic terrestrial hot spring. Nak82 is genetically and metabolically distinct from <i>Ardenticatena maritima</i> and likely represents a new genus- or family-level lineage lacking high-potential respiratory pathways.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00571-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36245196","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 9
Complete Genome Sequence of Bacillus subtilis Strain DKU_NT_02, Isolated from Traditional Korean Food Using Soybean (Chung-gook-jang) for High-Quality Poly-γ-Glutamic Acid Activity. 从韩国传统食品中分离得到的枯草芽孢杆菌DKU_NT_02的全基因组序列，用于高品质聚γ-谷氨酸活性研究。
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00525-18
Man-Seok Bang, Hee-Won Jeong, Yea-Jin Lee, Su Ji Lee, Sang-Cheol Lee, Jang-In Shin, Chung-Hun Oh
{"title":"Complete Genome Sequence of Bacillus subtilis Strain DKU_NT_02, Isolated from Traditional Korean Food Using Soybean (Chung-gook-jang) for High-Quality Poly-γ-Glutamic Acid Activity.","authors":"Man-Seok Bang,&nbsp;Hee-Won Jeong,&nbsp;Yea-Jin Lee,&nbsp;Su Ji Lee,&nbsp;Sang-Cheol Lee,&nbsp;Jang-In Shin,&nbsp;Chung-Hun Oh","doi":"10.1128/genomeA.00525-18","DOIUrl":"https://doi.org/10.1128/genomeA.00525-18","url":null,"abstract":"<p><p>The complete genome sequence of <i>Bacillus subtilis</i> strain DKU_NT_02, isolated from traditional Korean food using soybeans (chung-gook-jang), is presented here. This strain was chosen to help identify genetic factors with high-quality poly-γ-glutamic acid (γPGA) activity.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00525-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36247036","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Genome Sequence of a Staphylococcus epidermidis Strain (GTH12) Associated with Candida albicans SC5314 Cultured under Hypoxia at 37°C in Glycerol for 12 Weeks. 与白色念珠菌SC5314相关的表皮葡萄球菌(GTH12)在37℃低氧甘油中培养12周的基因组序列
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00533-18
Danielle do Carmo Ferreira Bruno, Thais Fernanda Bartelli, Marcelo R S Briones
{"title":"Genome Sequence of a Staphylococcus epidermidis Strain (GTH12) Associated with Candida albicans SC5314 Cultured under Hypoxia at 37°C in Glycerol for 12 Weeks.","authors":"Danielle do Carmo Ferreira Bruno,&nbsp;Thais Fernanda Bartelli,&nbsp;Marcelo R S Briones","doi":"10.1128/genomeA.00533-18","DOIUrl":"https://doi.org/10.1128/genomeA.00533-18","url":null,"abstract":"<p><p>Polymicrobial infections with mixed-species biofilms are important health problems because of increased antimicrobial resistance and worse patient outcomes than with monomicrobial infections. Here, we present the whole-genome sequence of <i>Staphylococcus epidermidis</i> strain GTH12, which was cocultured with the yeast <i>Candida albicans</i> SC5314 (generating <i>C. albicans</i> strain SC5314 GTH12), thus providing genomic information on polymicrobial infections.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00533-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36247040","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Complete Genome Sequence of Lychnis Mottle Virus Isolated in Japan. 日本分离的荔枝斑驳病毒全基因组序列。
Genome Announcements Pub Date : 2018-06-21 DOI: 10.1128/genomeA.00535-18
Yuji Fujimoto, Takamichi Nijo, Naoi Hosoe, Kiyoto Watanabe, Kensaku Maejima, Yasuyuki Yamaji, Shigetou Namba
{"title":"Complete Genome Sequence of Lychnis Mottle Virus Isolated in Japan.","authors":"Yuji Fujimoto,&nbsp;Takamichi Nijo,&nbsp;Naoi Hosoe,&nbsp;Kiyoto Watanabe,&nbsp;Kensaku Maejima,&nbsp;Yasuyuki Yamaji,&nbsp;Shigetou Namba","doi":"10.1128/genomeA.00535-18","DOIUrl":"https://doi.org/10.1128/genomeA.00535-18","url":null,"abstract":"<p><p>We report here the first complete genome sequence of a Japanese isolate of lychnis mottle virus (LycMoV-J). The genome segments of LycMoV-J have a unique structure in their 3' untranslated regions, and the encoded proteins have the same structure as that of an isolate reported from South Korea.</p>","PeriodicalId":12619,"journal":{"name":"Genome Announcements","volume":"6 25","pages":""},"PeriodicalIF":0.0,"publicationDate":"2018-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1128/genomeA.00535-18","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36246400","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
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