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Advancements, deficiencies, and future necessities of studying Saprolegniales: A semi-quantitative review of 1073 published papers Saprolegniales研究的进展、不足和未来的必要性:1073篇已发表论文的半定量综述
IF 6 2区 生物学
Fungal Biology Reviews Pub Date : 2023-12-01 Epub Date: 2023-05-12 DOI: 10.1016/j.fbr.2023.100319
Hossein Masigol , Pieter van West , Seyedeh Roksana Taheri , Juan-Miguel Fregeneda-Grandes , Lucian Pârvulescu , Debbie McLaggan , Tim Tobias Bliss , Reza Mostowfizadeh-Ghalamfarsa , Mohammad Javad Pourmoghaddam , Hans-Peter Grossart
{"title":"Advancements, deficiencies, and future necessities of studying Saprolegniales: A semi-quantitative review of 1073 published papers","authors":"Hossein Masigol ,&nbsp;Pieter van West ,&nbsp;Seyedeh Roksana Taheri ,&nbsp;Juan-Miguel Fregeneda-Grandes ,&nbsp;Lucian Pârvulescu ,&nbsp;Debbie McLaggan ,&nbsp;Tim Tobias Bliss ,&nbsp;Reza Mostowfizadeh-Ghalamfarsa ,&nbsp;Mohammad Javad Pourmoghaddam ,&nbsp;Hans-Peter Grossart","doi":"10.1016/j.fbr.2023.100319","DOIUrl":"10.1016/j.fbr.2023.100319","url":null,"abstract":"<div><p>Research on the order <em>Saprolegniales</em> (<em>Oomycota</em>) has been an ongoing quest for more than a century. The best studied genera are <em>Saprolegnia</em> and <em>Aphanomyces</em>, known for their pathogenicity on freshwater animals. In this study, we reviewed 1073 papers and 2803 ITS sequences of <em>Saprolegniales</em> to investigate their taxonomy, diversity and potential roles in mainly freshwater ecosytems. We found that, in general, our knowledge on diversity and ecology of <em>Saprolegniales</em> is limited. Neither classic taxonomy nor available molecular techniques have been sufficient to delineate genera and species and show their relative distribution in freshwater-associated habitats. Also, we currently lack a comprehensive understanding of their involvement in carbon turnover and food web dynamics. Finally, due to lack of using high-throughput sequencing techniques, it is not clear how and to what extent communities of <em>Saprolegniales</em> might differ in freshwater econiches. Therefore, we provide a historical perspective on the establishment of <em>Saprolegniales</em>, explain improvements, highlight deficiencies, and finally propose new research avenues for more systematic studies. We conclude that challenges in studying <em>Saprolegniales</em> can be removed by increasing the practicality of classic taxonomy and applying available molecular toolboxes (multi-gene phylogeny and high-throughput sequencing). Additionally, inclusion of <em>Saprolegniales</em> in freshwater carbon cycling should be addressed for their better ecological resolution.</p></div>","PeriodicalId":12563,"journal":{"name":"Fungal Biology Reviews","volume":"46 ","pages":"Article 100319"},"PeriodicalIF":6.0,"publicationDate":"2023-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44557929","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Opportunities for diversified usage of metabarcoding data for fungal biogeography through increased metadata quality 通过提高元数据质量,为真菌生物地理学提供多元使用元条形码数据的机会
IF 6 2区 生物学
Fungal Biology Reviews Pub Date : 2023-12-01 Epub Date: 2023-07-04 DOI: 10.1016/j.fbr.2023.100329
Mathew Andrew Harris , Bernard Slippers , Martin Kemler , Michelle Greve
{"title":"Opportunities for diversified usage of metabarcoding data for fungal biogeography through increased metadata quality","authors":"Mathew Andrew Harris ,&nbsp;Bernard Slippers ,&nbsp;Martin Kemler ,&nbsp;Michelle Greve","doi":"10.1016/j.fbr.2023.100329","DOIUrl":"https://doi.org/10.1016/j.fbr.2023.100329","url":null,"abstract":"","PeriodicalId":12563,"journal":{"name":"Fungal Biology Reviews","volume":"46 ","pages":""},"PeriodicalIF":6.0,"publicationDate":"2023-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49861236","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Nutritional requirements of the human pathogenic fungus, Trichophyton rubrum, and nutritional immunity of the human skin as barrier against colonization 人类病原真菌红毛癣菌的营养需求,以及人体皮肤作为抗定植屏障的营养免疫
IF 6 2区 生物学
Fungal Biology Reviews Pub Date : 2023-09-01 Epub Date: 2023-07-11 DOI: 10.1016/j.fbr.2023.100330
Oliver Blechert , Shuzhen Xiong , Jingjing Chen , Alexandra C. Brand , Ping Zhan
{"title":"Nutritional requirements of the human pathogenic fungus, Trichophyton rubrum, and nutritional immunity of the human skin as barrier against colonization","authors":"Oliver Blechert ,&nbsp;Shuzhen Xiong ,&nbsp;Jingjing Chen ,&nbsp;Alexandra C. Brand ,&nbsp;Ping Zhan","doi":"10.1016/j.fbr.2023.100330","DOIUrl":"10.1016/j.fbr.2023.100330","url":null,"abstract":"<div><p><span><em>Trichophyton rubrum</em></span><span> is a pathogenic fungus infecting human skin, hairs and nails. These substrates are colonized only by very few fungal species. In this review, we summarise the nutritional requirements of fungal species, with a focus on </span><em>T. rubrum</em><span><span>, and compare them with nutrients available in the keratinized tissues. The outer layers of the human skin are low in most nutrients required for fungal growth, the basis of nutritional immunity. Carbohydrate availability is low and protein, in the form of </span>keratin, is used for energy and carbon by the fungus. In addition to the nitrogen derived from keratin, the skin is rich in phosphorus, sulfur, potassium and chloride. The concentration of trace elements is very low, especially in the outermost layer of the skin, and magnesium, iron and zinc are likely the most relevant limiting elements for </span><em>T. rubrum</em>. We point to the evolutionary adaption of the fungus to the human skin. <em>T. rubrum</em> has a sophisticated system for the digestion and utilization of extracellular protein and a relative low demand for micronutrients.</p></div>","PeriodicalId":12563,"journal":{"name":"Fungal Biology Reviews","volume":"45 ","pages":"Article 100330"},"PeriodicalIF":6.0,"publicationDate":"2023-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48656407","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Wood decay fungi and their bacterial interaction partners in the built environment – A systematic review on fungal bacteria interactions in dead wood and timber 建筑环境中木材腐烂真菌及其细菌相互作用伙伴——枯木和木材中真菌细菌相互作用的系统综述
IF 6 2区 生物学
Fungal Biology Reviews Pub Date : 2023-09-01 Epub Date: 2022-12-24 DOI: 10.1016/j.fbr.2022.100305
Julia Embacher , Susanne Zeilinger , Martin Kirchmair , Luis M. Rodriguez-R , Sigrid Neuhauser
{"title":"Wood decay fungi and their bacterial interaction partners in the built environment – A systematic review on fungal bacteria interactions in dead wood and timber","authors":"Julia Embacher ,&nbsp;Susanne Zeilinger ,&nbsp;Martin Kirchmair ,&nbsp;Luis M. Rodriguez-R ,&nbsp;Sigrid Neuhauser","doi":"10.1016/j.fbr.2022.100305","DOIUrl":"https://doi.org/10.1016/j.fbr.2022.100305","url":null,"abstract":"","PeriodicalId":12563,"journal":{"name":"Fungal Biology Reviews","volume":"45 ","pages":""},"PeriodicalIF":6.0,"publicationDate":"2023-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49885008","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 11
In search of the phytohormone functions in Fungi:Cytokinins 寻找真菌中的植物激素功能:细胞分裂素
IF 6 2区 生物学
Fungal Biology Reviews Pub Date : 2023-09-01 Epub Date: 2023-01-25 DOI: 10.1016/j.fbr.2023.100309
Nina Vedenicheva, Iryna Kosakivska
{"title":"In search of the phytohormone functions in Fungi:Cytokinins","authors":"Nina Vedenicheva,&nbsp;Iryna Kosakivska","doi":"10.1016/j.fbr.2023.100309","DOIUrl":"https://doi.org/10.1016/j.fbr.2023.100309","url":null,"abstract":"","PeriodicalId":12563,"journal":{"name":"Fungal Biology Reviews","volume":"45 ","pages":""},"PeriodicalIF":6.0,"publicationDate":"2023-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49885007","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Unseen fungal biodiversity and complex inter-organismal interactions in Protea flower heads 看不见的真菌多样性和复杂的生物间相互作用在Protea花头
IF 6 2区 生物学
Fungal Biology Reviews Pub Date : 2023-09-01 Epub Date: 2023-03-15 DOI: 10.1016/j.fbr.2023.100317
Janneke Aylward , Francois Roets , Léanne L. Dreyer , Michael J. Wingfield
{"title":"Unseen fungal biodiversity and complex inter-organismal interactions in Protea flower heads","authors":"Janneke Aylward ,&nbsp;Francois Roets ,&nbsp;Léanne L. Dreyer ,&nbsp;Michael J. Wingfield","doi":"10.1016/j.fbr.2023.100317","DOIUrl":"https://doi.org/10.1016/j.fbr.2023.100317","url":null,"abstract":"","PeriodicalId":12563,"journal":{"name":"Fungal Biology Reviews","volume":"45 ","pages":""},"PeriodicalIF":6.0,"publicationDate":"2023-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49885011","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Fungal myosin-1 homologs as key molecular motors at the membrane–cytoskeleton interface 真菌肌球蛋白-1同源物作为膜-细胞骨架界面的关键分子马达
IF 6 2区 生物学
Fungal Biology Reviews Pub Date : 2023-09-01 Epub Date: 2023-04-30 DOI: 10.1016/j.fbr.2023.100318
Qin-Rong Tan , Xiang-dong Li
{"title":"Fungal myosin-1 homologs as key molecular motors at the membrane–cytoskeleton interface","authors":"Qin-Rong Tan ,&nbsp;Xiang-dong Li","doi":"10.1016/j.fbr.2023.100318","DOIUrl":"https://doi.org/10.1016/j.fbr.2023.100318","url":null,"abstract":"","PeriodicalId":12563,"journal":{"name":"Fungal Biology Reviews","volume":"45 ","pages":""},"PeriodicalIF":6.0,"publicationDate":"2023-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49885055","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Taxus associated fungal endophytes: anticancerous to other biological activities 红豆杉相关真菌内生菌:抗癌及其他生物活性
IF 6 2区 生物学
Fungal Biology Reviews Pub Date : 2023-09-01 Epub Date: 2023-02-06 DOI: 10.1016/j.fbr.2023.100308
Priyanka Adhikari , Kuldeep Joshi , Anita Pandey
{"title":"Taxus associated fungal endophytes: anticancerous to other biological activities","authors":"Priyanka Adhikari ,&nbsp;Kuldeep Joshi ,&nbsp;Anita Pandey","doi":"10.1016/j.fbr.2023.100308","DOIUrl":"https://doi.org/10.1016/j.fbr.2023.100308","url":null,"abstract":"","PeriodicalId":12563,"journal":{"name":"Fungal Biology Reviews","volume":"45 ","pages":""},"PeriodicalIF":6.0,"publicationDate":"2023-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49884995","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Production of kojic acid by Aspergillus species: Trends and applications 曲霉种生产曲酸:趋势与应用
IF 6 2区 生物学
Fungal Biology Reviews Pub Date : 2023-09-01 Epub Date: 2023-02-27 DOI: 10.1016/j.fbr.2023.100313
Maria Tamara de Caldas Felipe , Renan do Nascimento Barbosa , Jadson Diogo Pereira Bezerra , Cristina Maria de Souza-Motta
{"title":"Production of kojic acid by Aspergillus species: Trends and applications","authors":"Maria Tamara de Caldas Felipe ,&nbsp;Renan do Nascimento Barbosa ,&nbsp;Jadson Diogo Pereira Bezerra ,&nbsp;Cristina Maria de Souza-Motta","doi":"10.1016/j.fbr.2023.100313","DOIUrl":"https://doi.org/10.1016/j.fbr.2023.100313","url":null,"abstract":"","PeriodicalId":12563,"journal":{"name":"Fungal Biology Reviews","volume":"45 ","pages":""},"PeriodicalIF":6.0,"publicationDate":"2023-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49884994","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
Reviewing the contributions of macrofungi to forest ecosystem processes and services 综述了大型真菌对森林生态系统过程和服务的贡献
IF 6 2区 生物学
Fungal Biology Reviews Pub Date : 2023-06-01 Epub Date: 2022-12-08 DOI: 10.1016/j.fbr.2022.11.002
Allen Grace T. Niego , Sylvie Rapior , Naritsada Thongklang , Olivier Raspé , Kevin D. Hyde , Peter Mortimer
{"title":"Reviewing the contributions of macrofungi to forest ecosystem processes and services","authors":"Allen Grace T. Niego ,&nbsp;Sylvie Rapior ,&nbsp;Naritsada Thongklang ,&nbsp;Olivier Raspé ,&nbsp;Kevin D. Hyde ,&nbsp;Peter Mortimer","doi":"10.1016/j.fbr.2022.11.002","DOIUrl":"https://doi.org/10.1016/j.fbr.2022.11.002","url":null,"abstract":"","PeriodicalId":12563,"journal":{"name":"Fungal Biology Reviews","volume":"44 ","pages":""},"PeriodicalIF":6.0,"publicationDate":"2023-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49864818","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 7
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