Ka-Lai Pang , Brandon T. Hassett , Ami Shaumi , Sheng-Yu Guo , Jariya Sakayaroj , Michael Wai-Lun Chiang , Chien-Hui Yang , E.B. Gareth Jones
{"title":"Pathogenic fungi of marine animals: A taxonomic perspective","authors":"Ka-Lai Pang , Brandon T. Hassett , Ami Shaumi , Sheng-Yu Guo , Jariya Sakayaroj , Michael Wai-Lun Chiang , Chien-Hui Yang , E.B. Gareth Jones","doi":"10.1016/j.fbr.2021.03.008","DOIUrl":"10.1016/j.fbr.2021.03.008","url":null,"abstract":"<div><p><span><span>Fungi cause diseases in a variety of marine animal hosts. After a thorough review of published literature, we identified 225 fungal species causing infections of 193 animal species, for a total of 357 combinations of pathogenic fungi and marine animal hosts. Among the 193 animal host species, Chordata (100 species, 51.8 %) and </span>Arthropoda<span> (68 species, 35.2 %) were discovered to be the most frequently reported hosts of fungal pathogens. Microsporidia (111 species, 49.3 %) constitutes over half of the described pathogenic fungal species of marine animals, followed by </span></span>Ascomycota<span><span><span> (85 species, 37.8 %), Mucoromycota (22 species, 9.8 %), Basidiomycota (6 species, 2.7 %) and </span>Chytridiomycota (1 species, 0.4 %). Microsporidia primarily parasitize marine arthropods and Teleostei fish, while Basidiomycota are primarily known to cause respiratory diseases of </span>marine mammals<span><span>. Ascomycota has a diverse host range, from mammals, fish, crustaceans, soft corals and </span>sea turtle. Few Mucoromycota and Chytridiomycota were reported to infect marine animals. Fungal diseases documented in this review likely represent a fraction of fungal diseases in the ocean, where it was estimated to be inhabited by 2.15 million animal species. Intensification of aquaculture practices, global warming and marine pollution may increase fungal disease outbreak of marine animals. All the topics mentioned above will be discussed in greater details in this review.</span></span></p></div>","PeriodicalId":12563,"journal":{"name":"Fungal Biology Reviews","volume":"38 ","pages":"Pages 92-106"},"PeriodicalIF":6.0,"publicationDate":"2021-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.fbr.2021.03.008","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42995906","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Vincent Visconti, Emmanuel Coton, Karim Rigalma, Philippe Dantigny
{"title":"Effects of disinfectants on inactivation of mold spores relevant to the food industry: a review","authors":"Vincent Visconti, Emmanuel Coton, Karim Rigalma, Philippe Dantigny","doi":"10.1016/j.fbr.2021.09.004","DOIUrl":"10.1016/j.fbr.2021.09.004","url":null,"abstract":"<div><p><span><span>Due to the dissemination of airborne conidia and </span>spores<span><span><span>, molds can contaminate various surfaces. In the food industry sector, their presence and development can have health and economic implications. In order to control these undesirable microorganisms, various approaches can be used but the main one relies on the use of disinfectants. The objective of this review is to report the existing studies on the effect of various disinfectant molecules (i.e., </span>sodium hypochlorite, chlorine dioxide, ethanol and other alcohols, hydrogen peroxide, peracetic acid, and quaternary ammonium compounds) on the inactivation of </span>fungal spores<span>. These studies were sorted depending on the targeted fungal species. Noteworthy, in the food industry, four log and three log reductions are required to claim a fungicidal activity for suspension (European Standard 1650, 2019) and surface (European Standard 13697/IN1, 2019) treatments, respectively. Most of the presented studies concerned </span></span></span><span><em>Penicillium</em></span> and <span><em>Aspergillus</em></span><span> species (44 and 31% of the literature, respectively). In general, for a given disinfection<span> procedure, ascospores were more resistant than conidia, and </span></span><em>Aspergillus</em> conidia were more resistant than <em>Penicillium</em> ones. However, the variability of encountered molds (e.g. species, strains, physiological state) and disinfection procedures (e.g. molecules, concentrations, contact time) affected the efficacy of disinfectants.</p></div>","PeriodicalId":12563,"journal":{"name":"Fungal Biology Reviews","volume":"38 ","pages":"Pages 44-66"},"PeriodicalIF":6.0,"publicationDate":"2021-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41753570","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Jan H. Nagel, Michael J. Wingfield, Bernard Slippers
{"title":"Next-generation sequencing provides important insights into the biology and evolution of the Botryosphaeriaceae","authors":"Jan H. Nagel, Michael J. Wingfield, Bernard Slippers","doi":"10.1016/j.fbr.2021.09.002","DOIUrl":"10.1016/j.fbr.2021.09.002","url":null,"abstract":"<div><p>Next-generation sequencing (NGS) has revolutionized research on fungi including <span><em>Botryosphaeriaceae</em><em>,</em></span><span> a family of important plant and particularly tree pathogens. This review highlights the impact that NGS-generated genomes and transcriptomes have had on our understanding of the biology and evolution of these fungi. In less than a decade, 49 genomes representing 31 species in eight genera have been published for the </span><em>Botryosphaeriaceae</em><span><span>. These genomes have been used to show that species in this family are capable of sexual reproduction and that the evolution of their mating strategy is highly dynamic, due to multiple independent transitions from a heterothallic ancestral state to homothallism. Comparative genomics has further revealed an abundance of genes involved in infection and aggressiveness. These include plant cell wall-degrading enzymes and </span>secondary metabolite<span> biosynthetic genes as well as genes related to detoxification and cellular transport. Transcriptomics studies have shown that gene expression is tightly regulated and that there are often significant changes in gene expression occurring between early and late infection and as a response to environmental stress. Furthermore, the genomes of species in the </span></span><em>Botryosphaeriaceae</em><span> do not present genomic architecture compartmentalization based on gene and repeat density. Rather, gene organization patterns are influenced by gene co-expression patterns. NGS data have also made possible the development of molecular markers for some species and these can now also be used for species lacking genomic data. The growth of NGS platforms and their integration with other emerging technologies promises an even deeper understanding of the biology and evolution of the </span><em>Botryosphaeriaceae</em><span> and other plant pathogens<span>. This will continue to promote and will also revolutionize the field of plant pathology.</span></span></p></div>","PeriodicalId":12563,"journal":{"name":"Fungal Biology Reviews","volume":"38 ","pages":"Pages 25-43"},"PeriodicalIF":6.0,"publicationDate":"2021-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42448553","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The rise in cases of mucormycosis, candidiasis and aspergillosis amidst COVID19","authors":"Asmita Ghosh , Anusua Sarkar , Pubali Paul , Parth Patel","doi":"10.1016/j.fbr.2021.09.003","DOIUrl":"10.1016/j.fbr.2021.09.003","url":null,"abstract":"<div><p>The Coronavirus outbreak globally has changed the medical system and also led to a shortage of medical facilities in both developing and underdeveloped countries. The COVID19 disease, being novel in nature along with high infectivity and frequent mutational rate, has been termed to be fatal across the globe. The advent of infection by SARS-CoV-2 has brought a myriad of secondary complications and comorbidities resulting in additional challenges to the health care system induced by novel therapeutic procedures. The emerging variant with respect to the Indian subcontinent and the associated genetic mutations have worsened the situation at hand. Proper clinical management along with epidemiological studies and clinical presentations in scientific studies and trials is necessary in order to combat the simultaneous waves of emerging strains. This article summarizes three of the major fungal outbreaks in India namely mucormycosis, candidiasis and aspergillosis, and elaborates their subtypes, pathogenesis, symptoms and treatment and detection techniques. A detail of future therapeutics under consideration are also elaborated along with a general hypothesis on how COVID19 is related to immunological advances leading to major widespread fungal infection in the country. The factors that contribute in promoting virus proliferation and invasive fungal infections include cell-mediated immunity, associated immunocompromised conditions and treatment protocols that slows down immune mechanisms. To better comprehend a fungal or bacterial outbreak, it is very important to conduct audits mediated through multicenter national and state research teams for recognizing patterns and studying current cases of fungal infection in both healthy and comorbid groups of COVID19 patients.</p></div>","PeriodicalId":12563,"journal":{"name":"Fungal Biology Reviews","volume":"38 ","pages":"Pages 67-91"},"PeriodicalIF":6.0,"publicationDate":"2021-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8445778/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39437611","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Anna M. Kot , Marek Kieliszek , Kamil Piwowarek , Stanisław Błażejak , Cassamo Ussemane Mussagy
{"title":"Sporobolomyces and Sporidiobolus – non-conventional yeasts for use in industries","authors":"Anna M. Kot , Marek Kieliszek , Kamil Piwowarek , Stanisław Błażejak , Cassamo Ussemane Mussagy","doi":"10.1016/j.fbr.2021.06.001","DOIUrl":"10.1016/j.fbr.2021.06.001","url":null,"abstract":"<div><p>The search for new, biotechnologically useful yeast strains has been carried out in many research centers in the world. <em>Sporobolomyces</em> and <em>Sporidiobolus</em> are examples of such useful yeasts, that can be used as a source of many valuable metabolites in industries. This article describes the modern taxonomy of these yeasts, which resulted from many years of research, including both classical microbiology and genetic analyses. Subsequently, the paper presents a review of scientific studies on the biosynthesis of various extracellular and intracellular metabolites produced by <em>Sporobolomyces</em> and <em>Sporidiobolus</em> yeasts, which are of great importance in the contemporary food, feed, and pharmaceutical industries. Such metabolites include exopolysaccharides, lipids, carotenoids, enzymes, and γ-decalactone. Aiming at developing a sustainable circular bioeconomy, this study considers two directions of use of these yeasts, i.e., as a feed additive and as an antagonist in the biocontrol of plant materials. This article is one of the first to organize the knowledge collected from published studies and present the contemporary scientific achievements and prospects for the biotechnological use of <em>Sporobolomyces</em> and <em>Sporidiobolus</em> yeasts.</p></div>","PeriodicalId":12563,"journal":{"name":"Fungal Biology Reviews","volume":"37 ","pages":"Pages 41-58"},"PeriodicalIF":6.0,"publicationDate":"2021-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.fbr.2021.06.001","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47909057","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Repurposing benzimidazoles to fight Cryptococcus","authors":"Haroldo C. de Oliveira , Marcio L. Rodrigues","doi":"10.1016/j.fbr.2021.04.002","DOIUrl":"10.1016/j.fbr.2021.04.002","url":null,"abstract":"<div><p>The human diseases caused by the fungal pathogens <span><em>Cryptococcus neoformans</em></span> and <span><em>Cryptococcus gattii</em></span><span> are associated with high rates of mortality and toxic or cost-prohibitive therapeutic protocols. The need for affordable antifungals to combat cryptococcal disease is unquestionable. Benzimidazoles are potentially attractive antifungal compounds that were introduced in clinical practice nearly 60 years ago to treat helminthic infections. In addition to being safe, their cost of treatment is extraordinarily low. Several studies suggested benzimidazoles as promising anticryptococcal agents combining low-cost and high antifungal efficacy. So far, anti-cryptococcal activities were demonstrated for 16 different benzimidazoles. In particular, albendazole<span>, mebendazole, flubendazole, and fenbendazole have potent </span></span><em>in vitro</em><span> antifungal activity against </span><em>C. neoformans</em> and <em>C. gattii</em>. Mice lethally infected with <em>C. neoformans</em> and treated with fenbendazole had 100 % survival when the drug was administered intranasally. In this review, we discuss the potential of benzimidazoles as potential anti-cryptococcal agents, including a general literature overview, most recent findings, mechanism of antifungal action, costs, toxicity, and antifungal potential <em>in vivo</em>.</p></div>","PeriodicalId":12563,"journal":{"name":"Fungal Biology Reviews","volume":"37 ","pages":"Pages 27-40"},"PeriodicalIF":6.0,"publicationDate":"2021-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.fbr.2021.04.002","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45869322","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Donát Magyar , Zsófia Tischner , Anna Páldy , Sándor Kocsubé , Zsuzsanna Dancsházy , Ágnes Halász , László Kredics
{"title":"Impact of global megatrends on the spread of microscopic fungi in the Pannonian Biogeographical Region","authors":"Donát Magyar , Zsófia Tischner , Anna Páldy , Sándor Kocsubé , Zsuzsanna Dancsházy , Ágnes Halász , László Kredics","doi":"10.1016/j.fbr.2021.03.006","DOIUrl":"10.1016/j.fbr.2021.03.006","url":null,"abstract":"<div><p><span>Megatrends are slow processes that are hardly noticeable initially, but later cause long-term global effects. The European Environmental Agency (EEA) has set 11 global megatrends. Some of them - globalization, risk of pandemic, technological development and climate change - have major impacts on microfungi in a vulnerable region of Europe, the Pannonian Biogeographical Region. Due to the globalization, high amount of </span>inocula<span> is imported with tropical fruits, soil and packaging materials. Due to technological development, these fungi gain new habitats in the immediate surroundings of humans. In most of the cases these are considered to be extreme environments for which fungi can increasingly adapt. As a result of climate change, non-native species are more likely to colonize the natural habitats in the region. Some of these fungal species have great effect on human health and agriculture. The effects of global megatrends on fungi raise new issues not only from the point of view of economy and health, but also from plant protection and environmental perspectives. Because of the increasing presence of these fungal species, it is important to take them into account during the development of adaptation strategies.</span></p></div>","PeriodicalId":12563,"journal":{"name":"Fungal Biology Reviews","volume":"37 ","pages":"Pages 71-88"},"PeriodicalIF":6.0,"publicationDate":"2021-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.fbr.2021.03.006","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43070411","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Inês Mota , Rita Teixeira-Santos , João Cavaleiro Rufo
{"title":"Detection and identification of fungal species by electronic nose technology: A systematic review","authors":"Inês Mota , Rita Teixeira-Santos , João Cavaleiro Rufo","doi":"10.1016/j.fbr.2021.03.005","DOIUrl":"10.1016/j.fbr.2021.03.005","url":null,"abstract":"<div><p>A rapid and effective identification of fungal species is essential for numerous applications, and electronic nose systems are being proposed as suitable alternatives to currently available fungi identification techniques. Hence, the present review aims to unveil all published information concerning fungi identification by electronic nose systems.</p><p>A systematic review of the literature was conducted according to the PRISMA guidelines. A total of 16 articles met the inclusion criteria and were included in the analysis. The results of the reviewed studies demonstrated that effective detection of fungi was possible through sensor-based electronic nose systems, which may actually function as a mycotoxin screening tool for several applications.</p><p>The obtained results suggest that the sensor-based electronic nose systems may not only screen different fungi genera, but also identify the associated species. This technology has already been experimented in several fields, from food industry to clinical practice.</p><p>By summarizing these results, the present review may accelerate the standardization of electronic noses in fungi detection and discrimination, allowing a faster and more efficient screening of samples.</p></div>","PeriodicalId":12563,"journal":{"name":"Fungal Biology Reviews","volume":"37 ","pages":"Pages 59-70"},"PeriodicalIF":6.0,"publicationDate":"2021-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.fbr.2021.03.005","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44887095","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"A review of mycotoxin biosynthetic pathways: associated genes and their expressions under the influence of climatic factors","authors":"Oluwatobi Kolawole , Julie Meneely , Awanwee Petchkongkaew , Christopher Elliott","doi":"10.1016/j.fbr.2021.04.003","DOIUrl":"10.1016/j.fbr.2021.04.003","url":null,"abstract":"<div><p><span>Fungal contamination of agricultural commodities, particularly by mycotoxigenic fungi, represents an enormous concern for global food security in terms of feeding the world's growing population with sufficient and safe food. Not only do they reduce crop yield and quality, but they also produce substantial numbers of mycotoxins, which pose serious adverse health effects in human and animals. As the genome of most mycotoxigenic species have been sequenced, the gene clusters involved in the </span>biosynthesis<span><span><span><span> of agriculturally important mycotoxins including aflatoxins, </span>fumonisins, </span>ochratoxins<span>, zearalenone and </span></span>trichothecenes<span>, have been largely identified and characterised, with their roles elucidated by researchers. This review provides a comprehensive overview of the current knowledge of genes involved in the biosynthetic pathways of mycotoxins. In addition, the influence of climatic factors including water, temperature and carbon dioxide on differential mycotoxin gene expressions have been highlighted. Overall, the relationship between the relative expression of key regulatory and structural genes under different environmental conditions is significantly correlated with mycotoxins production. This indicates that mycotoxin gene induction can be used as a reliable indicator or marker to monitor mycotoxin production pre-and-post harvest. Furthermore, current strategies to manage mycotoxin risks still require improvement. Thus, an accurate understanding of the molecular mechanisms of mycotoxin biosynthesis in mycotoxigenic species could help to develop an innovative, robust targeted control strategy. This could include the exploitation of novel compounds, which can inhibit biosynthetic genes, to minimise mycotoxin risks.</span></span></p></div>","PeriodicalId":12563,"journal":{"name":"Fungal Biology Reviews","volume":"37 ","pages":"Pages 8-26"},"PeriodicalIF":6.0,"publicationDate":"2021-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.fbr.2021.04.003","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49553139","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Marcio Vinicius De Carvalho Barros Côrtes , Rafaela Araújo Guimarães , Denise Maria Guimarães Freire , Anne Sitarama Prabhu , Valacia Lemes da Silva-Lobo
{"title":"An overview of the virulence factors and the biocontrol potential of Sarocladium oryzae","authors":"Marcio Vinicius De Carvalho Barros Côrtes , Rafaela Araújo Guimarães , Denise Maria Guimarães Freire , Anne Sitarama Prabhu , Valacia Lemes da Silva-Lobo","doi":"10.1016/j.fbr.2021.04.001","DOIUrl":"10.1016/j.fbr.2021.04.001","url":null,"abstract":"<div><p><span><em>Sarocladium oryzae</em></span><span><span> is a filamentous fungus, commonly related to sheath rot, a disease until recently considered of low relevance but whose frequency has increased worldwide in rice cultivation. Few research groups have studied this microorganism, and consequently, the knowledge concerning biochemical and </span>genetic factors that differentiate isolates within populations in terms of virulence (virulence factors/phytotoxin production) is limited. Some works have demonstrated that avirulent isolates of </span><em>S. oryzae</em><span><span> may act as biological control agents<span> (BCAs), primarily due to their high potential for production of the secondary metabolite </span></span>cerulenin<span>, a potent antifungal. For these reasons, the goal of this paper is to review what is known about the virulence factors of </span></span><em>S. oryzae</em>, to highlight the main secondary metabolites produced by the fungus and their role in sheath rot development, and to try to establish a relationship between virulent, avirulent and potential BCA strains of <em>S. oryzae</em>.</p></div>","PeriodicalId":12563,"journal":{"name":"Fungal Biology Reviews","volume":"37 ","pages":"Pages 1-7"},"PeriodicalIF":6.0,"publicationDate":"2021-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.fbr.2021.04.001","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42798958","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}