Functional Plant Biology最新文献

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Mutant crtRB1 gene negates the unfavourable effects of opaque2 gene on germination and seed vigour among shrunken2-based biofortified sweet corn genotypes. 在基于缩二基因的生物强化甜玉米基因型中,突变体 crtRB1 基因抵消了缩二基因对萌芽和种子活力的不利影响。
IF 3 4区 生物学
Functional Plant Biology Pub Date : 2024-02-01 DOI: 10.1071/FP23179
Brijesh K Mehta, Hema S Chauhan, Sudipta Basu, Anjali Anand, Aanchal Baveja, Rajkumar U Zunjare, Vignesh Muthusamy, Ashok K Singh, Firoz Hossain
{"title":"Mutant <i>crtRB1</i> gene negates the unfavourable effects of <i>opaque2</i> gene on germination and seed vigour among <i>shrunken2</i>-based biofortified sweet corn genotypes.","authors":"Brijesh K Mehta, Hema S Chauhan, Sudipta Basu, Anjali Anand, Aanchal Baveja, Rajkumar U Zunjare, Vignesh Muthusamy, Ashok K Singh, Firoz Hossain","doi":"10.1071/FP23179","DOIUrl":"10.1071/FP23179","url":null,"abstract":"<p><p>Sweet corn is one of the most popular vegetables worldwide. However, traditional shrunken2 (sh2 )-based sweet corn varieties are poor in nutritional quality. Here, we analysed the effect of (1) β-carotene hydroxylase1 (crtRB1 ), (2) opaque2 (o2 ) and (3) o2+crtRB1 genes on nutritional quality, germination, seed vigour and physico-biochemical traits in a set of 27 biofortified sh2 -based sweet corn inbreds. The biofortified sweet corn inbreds recorded significantly higher concentrations of proA (16.47μg g-1 ), lysine (0.36%) and tryptophan (0.09%) over original inbreds (proA: 3.14μg g-1 , lysine: 0.18%, tryptophan: 0.04%). The crtRB1 -based inbreds had the lowest electrical conductivity (EC), whereas o2 -based inbreds possessed the highest EC. The o2 +crtRB1 -based inbreds showed similar EC to the original inbreds. Interestingly, o2 -based inbreds also had the lowest germination and seed vigour compared to original inbreds, whereas crtRB1 and o2 +crtRB1 introgressed sweet corn inbreds showed similar germination and seed vigour traits to their original versions. This suggested that the negative effect of o2 on germination, seed vigour and EC is nullified by crtRB1 in the double mutant sweet corn. Overall, o2 +crtRB1 -based sweet corn inbreds were found the most desirable over crtRB1 - and o2 -based inbreds alone.</p>","PeriodicalId":12483,"journal":{"name":"Functional Plant Biology","volume":null,"pages":null},"PeriodicalIF":3.0,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139704421","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Differential effects of elevated CO2 on awn and glume metabolism in durum wheat (Triticum durum). 高浓度二氧化碳对硬粒小麦(Triticum durum)芒和颖片新陈代谢的不同影响。
IF 3 4区 生物学
Functional Plant Biology Pub Date : 2024-02-01 DOI: 10.1071/FP23255
Guillaume Tcherkez, Sinda Ben Mariem, Iván Jauregui, Luis Larraya, Jose M García-Mina, Angel M Zamarreño, Andreas Fangmeier, Iker Aranjuelo
{"title":"Differential effects of elevated CO<sub>2</sub> on awn and glume metabolism in durum wheat (<i>Triticum durum</i>).","authors":"Guillaume Tcherkez, Sinda Ben Mariem, Iván Jauregui, Luis Larraya, Jose M García-Mina, Angel M Zamarreño, Andreas Fangmeier, Iker Aranjuelo","doi":"10.1071/FP23255","DOIUrl":"10.1071/FP23255","url":null,"abstract":"<p><p>While the effect of CO2 enrichment on wheat (Triticum spp.) photosynthesis, nitrogen content or yield has been well-studied, the impact of elevated CO2 on metabolic pathways in organs other than leaves is poorly documented. In particular, glumes and awns, which may refix CO2 respired by developing grains and be naturally exposed to higher-than-ambient CO2 mole fraction, could show specific responses to elevated CO2 . Here, we took advantage of a free-air CO2 enrichment experiment and performed multilevel analyses, including metabolomics, ionomics, proteomics, major hormones and isotopes in Triticum durum . While in leaves, elevated CO2 tended to accelerate amino acid metabolism with many significantly affected metabolites, the effect on glumes and awns metabolites was modest. There was a lower content in compounds of the polyamine pathway (along with uracile and allantoin) under elevated CO2 , suggesting a change in secondary N metabolism. Also, cytokinin metabolism appeared to be significantly affected under elevated CO2 . Despite this, elevated CO2 did not affect the final composition of awn and glume organic matter, with the same content in carbon, nitrogen and other elements. We conclude that elevated CO2 mostly impacts on leaf metabolism but has little effect in awns and glumes, including their composition at maturity.</p>","PeriodicalId":12483,"journal":{"name":"Functional Plant Biology","volume":null,"pages":null},"PeriodicalIF":3.0,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139930691","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Melatonin modulates the tolerance of plants to water stress: morphological response of the molecular mechanism. 褪黑激素调节植物对水分胁迫的耐受性:分子机制的形态学反应
IF 3 4区 生物学
Functional Plant Biology Pub Date : 2024-02-01 DOI: 10.1071/FP23199
Minmin He, Gui Geng, Shuyang Mei, Gang Wang, Lihua Yu, Yao Xu, Yuguang Wang
{"title":"Melatonin modulates the tolerance of plants to water stress: morphological response of the molecular mechanism.","authors":"Minmin He, Gui Geng, Shuyang Mei, Gang Wang, Lihua Yu, Yao Xu, Yuguang Wang","doi":"10.1071/FP23199","DOIUrl":"10.1071/FP23199","url":null,"abstract":"<p><p>Water stress (drought and waterlogging) leads to an imbalance in plant water distribution, disrupts cell homeostasis, and severely inhibits plant growth. Melatonin is a growth hormone that plants synthesise and has been shown to resist adversity in many plants. This review discusses the biosynthesis and metabolism of melatonin, as well as the changes in plant morphology and physiological mechanisms caused by the molecular defence process. Melatonin induces the expression of related genes in the process of plant photosynthesis under stress and protects the structural integrity of chloroplasts. Exogenous melatonin can maintain the dynamic balance of root ion exchange under waterlogging stress. Melatonin can repair mitochondria and alleviate damage caused by reactive oxygen species and reactive nitrogen species; and has a wide range of uses in the regulation of stress-specific genes and the activation of antioxidant enzyme genes. Melatonin improves the stability of membrane lipids in plant cells and maintains osmotic balance by regulating water channels. There is crosstalk between melatonin and other hormones, which jointly improve the ability of the root system to absorb water and breathe and promote plant growth. Briefly, as a multifunctional molecule, melatonin improves the tolerance of plants under water stress and promotes plant growth and development.</p>","PeriodicalId":12483,"journal":{"name":"Functional Plant Biology","volume":null,"pages":null},"PeriodicalIF":3.0,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139734821","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The mechanisms behind the contrasting responses to waterlogging in black-grass (Alopecurus myosuroides) and wheat (Triticum aestivum). 黑草(Alopecurus myosuroides)和小麦(Triticum aestivum)对涝害的不同反应背后的机制。
IF 3 4区 生物学
Functional Plant Biology Pub Date : 2024-02-01 DOI: 10.1071/FP23193
Christian Harrison, Clarice Noleto-Dias, Gianluca Ruvo, David J Hughes, Daniel P Smith, Andrew Mead, Jane L Ward, Sigrid Heuer, Dana R MacGregor
{"title":"The mechanisms behind the contrasting responses to waterlogging in black-grass (<i>Alopecurus myosuroides</i>) and wheat (<i>Triticum aestivum</i>).","authors":"Christian Harrison, Clarice Noleto-Dias, Gianluca Ruvo, David J Hughes, Daniel P Smith, Andrew Mead, Jane L Ward, Sigrid Heuer, Dana R MacGregor","doi":"10.1071/FP23193","DOIUrl":"10.1071/FP23193","url":null,"abstract":"<p><p>Black-grass (Alopecurus myosuroides ) is one of the most problematic agricultural weeds of Western Europe, causing significant yield losses in winter wheat (Triticum aestivum ) and other crops through competition for space and resources. Previous studies link black-grass patches to water-retaining soils, yet its specific adaptations to these conditions remain unclear. We designed pot-based waterlogging experiments to compare 13 biotypes of black-grass and six cultivars of wheat. These showed that wheat roots induced aerenchyma when waterlogged whereas aerenchyma-like structures were constitutively present in black-grass. Aerial biomass of waterlogged wheat was smaller, whereas waterlogged black-grass was similar or larger. Variability in waterlogging responses within and between these species was correlated with transcriptomic and metabolomic changes in leaves of control or waterlogged plants. In wheat, transcripts associated with regulation and utilisation of phosphate compounds were upregulated and sugars and amino acids concentrations were increased. Black-grass biotypes showed limited molecular responses to waterlogging. Some black-grass amino acids were decreased and one transcript commonly upregulated was previously identified in screens for genes underpinning metabolism-based resistance to herbicides. Our findings provide insights into the different waterlogging tolerances of these species and may help to explain the previously observed patchiness of this weed's distribution in wheat fields.</p>","PeriodicalId":12483,"journal":{"name":"Functional Plant Biology","volume":null,"pages":null},"PeriodicalIF":3.0,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139989776","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genome-wide identification, phylogeny and expression analysis of the R2R3-MYB gene family in quinoa (Chenopodium quinoa) under abiotic stress. 非生物胁迫下藜麦 R2R3-MYB 基因家族的全基因组鉴定、系统发育和表达分析
IF 3 4区 生物学
Functional Plant Biology Pub Date : 2024-02-01 DOI: 10.1071/FP23261
Pengcheng Ding, Peng Tang, Xiaofen Li, Adeela Haroon, Saima Nasreen, Hafeez Noor, Kotb A Attia, Asmaa M Abushady, Rongzhen Wang, Kaiyuan Cui, Xiangyun Wu, Min Sun, Zhiqiang Gao
{"title":"Genome-wide identification, phylogeny and expression analysis of the <i>R2R3-MYB</i> gene family in quinoa (<i>Chenopodium quinoa</i>) under abiotic stress.","authors":"Pengcheng Ding, Peng Tang, Xiaofen Li, Adeela Haroon, Saima Nasreen, Hafeez Noor, Kotb A Attia, Asmaa M Abushady, Rongzhen Wang, Kaiyuan Cui, Xiangyun Wu, Min Sun, Zhiqiang Gao","doi":"10.1071/FP23261","DOIUrl":"10.1071/FP23261","url":null,"abstract":"<p><p>The MYB transcription factor (TF) are among the largest gene families of plants being responsible for several biological processes. The R2R3-MYB gene family are integral player regulating plant primary and secondary metabolism, growth and development, and responses to hormones and stresses. The phylogenetic analysis combined with gene structure analysis and motif determination resulted in division of R2R3-MYB gene family into 27 subgroups. Evidence generated from synteny analyses indicated that CqR2R3-MYBs gene family is featured by tandem and segmental duplication events. On the basis of RNA-Seq data, the expression patterns of different tissues under salt treatment were investigated resulting CqR2R3-MYB genes high expression both in roots and stem of quinoa (Chenopodium quinoa ) plants. More than half of CqR2R3-MYB genes showed expression under salt stress. Based on this result, CqR2R3-MYB s may regulate quinoa plant growth development and resistance to abiotic stresses. These findings provided comprehensive insights on role of CqR2R3-MYBs gene family members in quinoa and candidate MYB gene family members can be further studies on their role for abiotic stress tolerance in crop plants.</p>","PeriodicalId":12483,"journal":{"name":"Functional Plant Biology","volume":null,"pages":null},"PeriodicalIF":3.0,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139989775","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Corrigendum to: Transcriptome-based analysis of candidate gene markers associated with resistance mechanism to Phytophthora melonis that causes root and crown rot in pumpkin. 更正:基于转录组的候选基因标记分析与南瓜根腐病和冠腐病的抗性机制有关。
IF 3 4区 生物学
Functional Plant Biology Pub Date : 2024-02-01 DOI: 10.1071/FP23038_CO
Mohammadhadi Najafi, Mehdi Nasr-Esfahani, Jafar Vatandoost, Hamed Hassanzade-Khankahdani, Matin Jami Moeini
{"title":"<i>Corrigendum to</i>: Transcriptome-based analysis of candidate gene markers associated with resistance mechanism to <i>Phytophthora melonis</i> that causes root and crown rot in pumpkin.","authors":"Mohammadhadi Najafi, Mehdi Nasr-Esfahani, Jafar Vatandoost, Hamed Hassanzade-Khankahdani, Matin Jami Moeini","doi":"10.1071/FP23038_CO","DOIUrl":"https://doi.org/10.1071/FP23038_CO","url":null,"abstract":"","PeriodicalId":12483,"journal":{"name":"Functional Plant Biology","volume":null,"pages":null},"PeriodicalIF":3.0,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140858151","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Growth, ultrastructural and physiological characteristics of Abelmoschus cytotypes under elevated ozone stress: a study on ploidy-specific responses. 高浓度臭氧胁迫下阿贝尔莫斯卡菌细胞型的生长、超微结构和生理特点:关于倍体特异性反应的研究。
IF 3 4区 生物学
Functional Plant Biology Pub Date : 2024-02-01 DOI: 10.1071/FP23229
Priyanka Singh, Naushad Ansari, Amit Kumar Mishra, Madhoolika Agrawal, Shashi Bhushan Agrawal
{"title":"Growth, ultrastructural and physiological characteristics of <i>Abelmoschus</i> cytotypes under elevated ozone stress: a study on ploidy-specific responses.","authors":"Priyanka Singh, Naushad Ansari, Amit Kumar Mishra, Madhoolika Agrawal, Shashi Bhushan Agrawal","doi":"10.1071/FP23229","DOIUrl":"10.1071/FP23229","url":null,"abstract":"<p><p>Tropospheric ozone (O3 ) is a significant abiotic stressor whose rising concentration negatively influences plant growth. Studies related to the differential response of Abelmoschus cytotypes to elevated O3 treatment are scarce and need further exploration to recognise the role of polyploidisation in stress tolerance. In this study, we analysed the changes in growth pattern, ultrastructure, physiology and foliar protein profile occurring under O3 stress in Abelmoschus moschatus (monoploid), Abelmoschus esculentus (diploid) and Abelmoschus caillei (triploid). Our findings showed that higher stomatal conductance in A. moschatus triggered higher O3 intake, causing damage to stomatal cells and photosynthetic pigments. Additionally, it caused a reduction in photosynthetic rates, leading to reduced plant growth, total biomass and economic yield. This O3 -induced toxicity was less in diploid and triploid cytotypes of Abelmoschus . Protein profiling by sodium dodecyl sulpate-polyacrylamide gel electrophoresis showed a significant decrease in the commonly found RuBisCO larger and smaller subunits. The decrease was more prominent in monoploid compared to diploid and triploid. This study provides crucial data for research that aim to enhance plant ability to withstand O3 induced oxidative stress. Our findings may help in developing a tolerant variety through plant breeding techniques, which will be economically more advantageous in reaching the objective of sustainable production at the high O3 levels projected under a climate change scenario.</p>","PeriodicalId":12483,"journal":{"name":"Functional Plant Biology","volume":null,"pages":null},"PeriodicalIF":3.0,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139680978","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Perception of strigolactones and the coordinated phytohormonal regulation on rice (Oryza sativa) tillering is affected by endogenous ascorbic acid. 水稻(Oryza sativa)分蘖时对绞股蓝内酯的感知和植物激素的协调调节受内源抗坏血酸的影响。
IF 3 4区 生物学
Functional Plant Biology Pub Date : 2024-02-01 DOI: 10.1071/FP23148
Le Yu, Jiankai Zhou, Junlong Lin, Mengwei Chen, Fang Liu, Xinlin Zheng, Liping Zhou, Ruozhong Wang, Langtao Xiao, Yonghai Liu
{"title":"Perception of strigolactones and the coordinated phytohormonal regulation on rice (<i>Oryza sativa</i>) tillering is affected by endogenous ascorbic acid.","authors":"Le Yu, Jiankai Zhou, Junlong Lin, Mengwei Chen, Fang Liu, Xinlin Zheng, Liping Zhou, Ruozhong Wang, Langtao Xiao, Yonghai Liu","doi":"10.1071/FP23148","DOIUrl":"10.1071/FP23148","url":null,"abstract":"<p><p>Phytohormones play a key role in regulating tiller number. Ascorbic acid (Asc)-phytohormone interaction plays a pivotal role in the regulation of senescence. We analysed the relationship between Asc and the enzyme concentrations and gene transcript abundances related to the signal perception of strigolactones (SLs), the contents of four phytohormones (abscisic acid, ABA; jasmonic acid, JA; indole acetic acid, IAA; cytokinin, CTK), the enzyme concentrations and gene transcript abundances related to the synthesis or transportation of these four phytohormones. Our results showed that Asc deficiency leads to the upregulation of enzyme concentrations, gene transcript abundances related to the SL signal perception, ABA synthesis and IAA transport. The altered level of Asc also leads to a change in the contents of ABA, JA, IAA and CTK. These findings support the conclusion that Asc or Asc/DHA play an important role in the signal perception and transduction of SLs, and Asc may affect the coordinated regulation of SL, IAA and CTK on rice (Oryza sativa ) tillering.</p>","PeriodicalId":12483,"journal":{"name":"Functional Plant Biology","volume":null,"pages":null},"PeriodicalIF":3.0,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139702228","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Upregulation of TaHSP90A transcripts enhances heat tolerance and increases grain yield in wheat under changing climate conditions. TaHSP90A转录本的上调增强了小麦在气候变化条件下的耐热性并提高了谷物产量。
IF 3 4区 生物学
Functional Plant Biology Pub Date : 2024-02-01 DOI: 10.1071/FP23275
Ali Ammar, Zulfiqar Ali, Muhammad Abu Bakar Saddique, Muhammad Habib-Ur-Rahman, Imtiaz Ali
{"title":"Upregulation of <i>TaHSP90A</i> transcripts enhances heat tolerance and increases grain yield in wheat under changing climate conditions.","authors":"Ali Ammar, Zulfiqar Ali, Muhammad Abu Bakar Saddique, Muhammad Habib-Ur-Rahman, Imtiaz Ali","doi":"10.1071/FP23275","DOIUrl":"10.1071/FP23275","url":null,"abstract":"<p><p>Plants have certain adaptation mechanisms to combat temperature extremes and fluctuations. The heat shock protein (HSP90A) plays a crucial role in plant defence mechanisms under heat stress. In silico analysis of the eight TaHSP90A transcripts showed diverse structural patterns in terms of intron/exons, domains, motifs and cis elements in the promoter region in wheat. These regions contained cis elements related to hormones, biotic and abiotic stress and development. To validate these findings, two contrasting wheat genotypes E-01 (thermo-tolerant) and SHP-52 (thermo-sensitive) were used to evaluate the expression pattern of three transcripts TraesCS2A02G033700.1, TraesCS5B02G258900.3 and TraesCS5D02G268000.2 in five different tissues at five different temperature regimes. Expression of TraesCS2A02G033700.1 was upregulated (2-fold) in flag leaf tissue after 1 and 4h of heat treatment in E-01. In contrast, SHP-52 showed downregulated expression after 1h of heat treatment. Additionally, it was shown that under heat stress, the increased expression of TaHSP90A led to an increase in grain production. As the molecular mechanism of genes involved in heat tolerance at the reproductive stage is mostly unknown, these results provide new insights into the role of TaHSP90A transcripts in developing phenotypic plasticity in wheat to develop heat-tolerant cultivars under the current changing climate scenario.</p>","PeriodicalId":12483,"journal":{"name":"Functional Plant Biology","volume":null,"pages":null},"PeriodicalIF":3.0,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139702230","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Meta-analysis of transcriptomic profiles in Dunaliella tertiolecta reveals molecular pathway responses to different abiotic stresses. 邓氏藻转录组的元分析揭示了分子通路对不同非生物胁迫的响应。
IF 3 4区 生物学
Functional Plant Biology Pub Date : 2024-02-01 DOI: 10.1071/FP23002
Bahman Panahi, Mohammad Farhadian, Nahid Hosseinzadeh Gharajeh, Seyyed Abolghasem Mohammadi, Mohammad Amin Hejazi
{"title":"Meta-analysis of transcriptomic profiles in <i>Dunaliella tertiolecta</i> reveals molecular pathway responses to different abiotic stresses.","authors":"Bahman Panahi, Mohammad Farhadian, Nahid Hosseinzadeh Gharajeh, Seyyed Abolghasem Mohammadi, Mohammad Amin Hejazi","doi":"10.1071/FP23002","DOIUrl":"10.1071/FP23002","url":null,"abstract":"<p><p>Microalgae are photosynthetic organisms and a potential source of sustainable metabolite production. However, different stress conditions might affect the production of various metabolites. In this study, a meta-analysis of RNA-seq experiments in Dunaliella tertiolecta was evaluated to compare metabolite biosynthesis pathways in response to abiotic stress conditions such as high light, nitrogen deficiency and high salinity. Results showed downregulation of light reaction, photorespiration, tetrapyrrole and lipid-related pathways occurred under salt stress. Nitrogen deficiency mostly induced the microalgal responses of light reaction and photorespiration metabolism. Phosphoenol pyruvate carboxylase, phosphoglucose isomerase, bisphosphoglycerate mutase and glucose-6-phosphate-1-dehydrogenase (involved in central carbon metabolism) were commonly upregulated under salt, light and nitrogen stresses. Interestingly, the results indicated that the meta-genes (modules of genes strongly correlated) were located in a hub of stress-specific protein-protein interaction (PPI) network. Module enrichment of meta-genes PPI networks highlighted the cross-talk between photosynthesis, fatty acids, starch and sucrose metabolism under multiple stress conditions. Moreover, it was observed that the coordinated expression of the tetrapyrrole intermediated with meta-genes was involved in starch biosynthesis. Our results also showed that the pathways of vitamin B6 metabolism, methane metabolism, ribosome biogenesis and folate biosynthesis responded specifically to different stress factors. Since the results of this study revealed the main pathways underlying the abiotic stress, they might be applied in optimised metabolite production by the microalga Dunaliella in future studies. PRISMA check list was also included in the study.</p>","PeriodicalId":12483,"journal":{"name":"Functional Plant Biology","volume":null,"pages":null},"PeriodicalIF":3.0,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139930693","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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