Frontiers in Computational Neuroscience最新文献

{"title":"A machine learning approach to evaluate the impact of virtual balance/cognitive training on fall risk in older women","authors":"Beata Sokołowska, Wiktor Świderski, Edyta Smolis-Bąk, Ewa Sokołowska, Teresa Sadura-Sieklucka","doi":"10.3389/fncom.2024.1390208","DOIUrl":"https://doi.org/10.3389/fncom.2024.1390208","url":null,"abstract":"IntroductionNovel technologies based on virtual reality (VR) are creating attractive virtual environments with high ecological value, used both in basic/clinical neuroscience and modern medical practice. The study aimed to evaluate the effects of VR-based training in an elderly population.Materials and methodsThe study included 36 women over the age of 60, who were randomly divided into two groups subjected to balance-strength and balance-cognitive training. The research applied both conventional clinical tests, such as (a) the Timed Up and Go test, (b) the five-times sit-to-stand test, and (c) the posturographic exam with the Romberg test with eyes open and closed. Training in both groups was conducted for 10 sessions and embraced exercises on a bicycle ergometer and exercises using non-immersive VR created by the ActivLife platform. Machine learning methods with a <jats:italic>k</jats:italic>-nearest neighbors classifier, which are very effective and popular, were proposed to statistically evaluate the differences in training effects in the two groups.Results and conclusionThe study showed that training using VR brought beneficial improvement in clinical tests and changes in the pattern of posturographic trajectories were observed. An important finding of the research was a statistically significant reduction in the risk of falls in the study population. The use of virtual environments in exercise/training has great potential in promoting healthy aging and preventing balance loss and falls among seniors.","PeriodicalId":12363,"journal":{"name":"Frontiers in Computational Neuroscience","volume":"27 1","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-05-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140929638","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Computational modeling to study the impact of changes in Nav1.8 sodium channel on neuropathic pain","authors":"Peter Kan, Yong Fang Zhu, Junling Ma, Gurmit Singh","doi":"10.3389/fncom.2024.1327986","DOIUrl":"https://doi.org/10.3389/fncom.2024.1327986","url":null,"abstract":"ObjectiveNav1.8 expression is restricted to sensory neurons; it was hypothesized that aberrant expression and function of this channel at the site of injury contributed to pathological pain. However, the specific contributions of Nav1.8 to neuropathic pain are not as clear as its role in inflammatory pain. The aim of this study is to understand how Nav1.8 present in peripheral sensory neurons regulate neuronal excitability and induce various electrophysiological features on neuropathic pain.MethodsTo study the effect of changes in sodium channel Nav1.8 kinetics, Hodgkin–Huxley type conductance-based models of spiking neurons were constructed using the NEURON v8.2 simulation software. We constructed a single-compartment model of neuronal soma that contained Nav1.8 channels with the ionic mechanisms adapted from some existing small DRG neuron models. We then validated and compared the model with our experimental data from <jats:italic>in vivo</jats:italic> recordings on soma of small dorsal root ganglion (DRG) sensory neurons in animal models of neuropathic pain (NEP).ResultsWe show that Nav1.8 is an important parameter for the generation and maintenance of abnormal neuronal electrogenesis and hyperexcitability. The typical increased excitability seen is dominated by a left shift in the steady state of activation of this channel and is further modulated by this channel’s maximum conductance and steady state of inactivation. Therefore, modified action potential shape, decreased threshold, and increased repetitive firing of sensory neurons in our neuropathic animal models may be orchestrated by these modulations on Nav1.8.ConclusionComputational modeling is a novel strategy to understand the generation of chronic pain. In this study, we highlight that changes to the channel functions of Nav1.8 within the small DRG neuron may contribute to neuropathic pain.","PeriodicalId":12363,"journal":{"name":"Frontiers in Computational Neuroscience","volume":"68 1","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-05-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140929786","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Deep learning for automatic segmentation of vestibular schwannoma: a retrospective study from multi-center routine MRI","authors":"Aaron Kujawa, Reuben Dorent, Steve Connor, Suki Thomson, Marina Ivory, Ali Vahedi, Emily Guilhem, Navodini Wijethilake, Robert Bradford, Neil Kitchen, Sotirios Bisdas, Sebastien Ourselin, Tom Vercauteren, Jonathan Shapey","doi":"10.3389/fncom.2024.1365727","DOIUrl":"https://doi.org/10.3389/fncom.2024.1365727","url":null,"abstract":"Automatic segmentation of vestibular schwannoma (VS) from routine clinical MRI has potential to improve clinical workflow, facilitate treatment decisions, and assist patient management. Previous work demonstrated reliable automatic segmentation performance on datasets of standardized MRI images acquired for stereotactic surgery planning. However, diagnostic clinical datasets are generally more diverse and pose a larger challenge to automatic segmentation algorithms, especially when post-operative images are included. In this work, we show for the first time that automatic segmentation of VS on routine MRI datasets is also possible with high accuracy. We acquired and publicly release a curated multi-center routine clinical (MC-RC) dataset of 160 patients with a single sporadic VS. For each patient up to three longitudinal MRI exams with contrast-enhanced T1-weighted (ceT1w) (<jats:italic>n</jats:italic> = 124) and T2-weighted (T2w) (<jats:italic>n</jats:italic> = 363) images were included and the VS manually annotated. Segmentations were produced and verified in an iterative process: (1) initial segmentations by a specialized company; (2) review by one of three trained radiologists; and (3) validation by an expert team. Inter- and intra-observer reliability experiments were performed on a subset of the dataset. A state-of-the-art deep learning framework was used to train segmentation models for VS. Model performance was evaluated on a MC-RC hold-out testing set, another public VS datasets, and a partially public dataset. The generalizability and robustness of the VS deep learning segmentation models increased significantly when trained on the MC-RC dataset. Dice similarity coefficients (DSC) achieved by our model are comparable to those achieved by trained radiologists in the inter-observer experiment. On the MC-RC testing set, median DSCs were 86.2(9.5) for ceT1w, 89.4(7.0) for T2w, and 86.4(8.6) for combined ceT1w+T2w input images. On another public dataset acquired for Gamma Knife stereotactic radiosurgery our model achieved median DSCs of 95.3(2.9), 92.8(3.8), and 95.5(3.3), respectively. In contrast, models trained on the Gamma Knife dataset did not generalize well as illustrated by significant underperformance on the MC-RC routine MRI dataset, highlighting the importance of data variability in the development of robust VS segmentation models. The MC-RC dataset and all trained deep learning models were made available online.","PeriodicalId":12363,"journal":{"name":"Frontiers in Computational Neuroscience","volume":"21 1","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-05-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140929649","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"PointAS: an attention based sampling neural network for visual perception","authors":"Bozhi Qiu, Sheng Li, Lei Wang","doi":"10.3389/fncom.2024.1340019","DOIUrl":"https://doi.org/10.3389/fncom.2024.1340019","url":null,"abstract":"Harnessing the remarkable ability of the human brain to recognize and process complex data is a significant challenge for researchers, particularly in the domain of point cloud classification—a technology that aims to replicate the neural structure of the brain for spatial recognition. The initial 3D point cloud data often suffers from noise, sparsity, and disorder, making accurate classification a formidable task, especially when extracting local information features. Therefore, in this study, we propose a novel attention-based end-to-end point cloud downsampling classification method, termed as PointAS, which is an experimental algorithm designed to be adaptable to various downstream tasks. PointAS consists of two primary modules: the adaptive sampling module and the attention module. Specifically, the attention module aggregates global features with the input point cloud data, while the adaptive module extracts local features. In the point cloud classification task, our method surpasses existing downsampling methods by a significant margin, allowing for more precise extraction of edge data points to capture overall contour features accurately. The classification accuracy of PointAS consistently exceeds 80% across various sampling ratios, with a remarkable accuracy of 75.37% even at ultra-high sampling ratios. Moreover, our method exhibits robustness in experiments, maintaining classification accuracies of 72.50% or higher under different noise disturbances. Both qualitative and quantitative experiments affirm the efficacy of our approach in the sampling classification task, providing researchers with a more accurate method to identify and classify neurons, synapses, and other structures, thereby promoting a deeper understanding of the nervous system.","PeriodicalId":12363,"journal":{"name":"Frontiers in Computational Neuroscience","volume":"10 1","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-05-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140834094","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Feedback stabilization of probabilistic finite state machines based on deep Q-network","authors":"Hui Tian, Xin Su, Yanfang Hou","doi":"10.3389/fncom.2024.1385047","DOIUrl":"https://doi.org/10.3389/fncom.2024.1385047","url":null,"abstract":"BackgroundAs an important mathematical model, the finite state machine (FSM) has been used in many fields, such as manufacturing system, health care, and so on. This paper analyzes the current development status of FSMs. It is pointed out that the traditional methods are often inconvenient for analysis and design, or encounter high computational complexity problems when studying FSMs.MethodThe deep Q-network (DQN) technique, which is a model-free optimization method, is introduced to solve the stabilization problem of probabilistic finite state machines (PFSMs). In order to better understand the technique, some preliminaries, including Markov decision process, ϵ-greedy strategy, DQN, and so on, are recalled.ResultsFirst, a necessary and sufficient stabilizability condition for PFSMs is derived. Next, the feedback stabilization problem of PFSMs is transformed into an optimization problem. Finally, by using the stabilizability condition and deep Q-network, an algorithm for solving the optimization problem (equivalently, computing a state feedback stabilizer) is provided.DiscussionCompared with the traditional Q learning, DQN avoids the limited capacity problem. So our method can deal with high-dimensional complex systems efficiently. The effectiveness of our method is further demonstrated through an illustrative example.","PeriodicalId":12363,"journal":{"name":"Frontiers in Computational Neuroscience","volume":"148 1","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-05-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140834210","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Grid codes vs. multi-scale, multi-field place codes for space","authors":"Robin Dietrich, Nicolai Waniek, Martin Stemmler, Alois Knoll","doi":"10.3389/fncom.2024.1276292","DOIUrl":"https://doi.org/10.3389/fncom.2024.1276292","url":null,"abstract":"IntroductionRecent work on bats flying over long distances has revealed that single hippocampal cells have multiple place fields of different sizes. At the network level, a multi-scale, multi-field place cell code outperforms classical single-scale, single-field place codes, yet the performance boundaries of such a code remain an open question. In particular, it is unknown how general multi-field codes compare to a highly regular grid code, in which cells form distinct modules with different scales.MethodsIn this work, we address the coding properties of theoretical spatial coding models with rigorous analyses of comprehensive simulations. Starting from a multi-scale, multi-field network, we performed evolutionary optimization. The resulting multi-field networks sometimes retained the multi-scale property at the single-cell level but most often converged to a single scale, with all place fields in a given cell having the same size. We compared the results against a single-scale single-field code and a one-dimensional grid code, focusing on two main characteristics: the performance of the code itself and the dynamics of the network generating it.ResultsOur simulation experiments revealed that, under normal conditions, a regular grid code outperforms all other codes with respect to decoding accuracy, achieving a given precision with fewer neurons and fields. In contrast, multi-field codes are more robust against noise and lesions, such as random drop-out of neurons, given that the significantly higher number of fields provides redundancy. Contrary to our expectations, the network dynamics of all models, from the original multi-scale models before optimization to the multi-field models that resulted from optimization, did not maintain activity bumps at their original locations when a position-specific external input was removed.DiscussionOptimized multi-field codes appear to strike a compromise between a place code and a grid code that reflects a trade-off between accurate positional encoding and robustness. Surprisingly, the recurrent neural network models we implemented and optimized for either multi- or single-scale, multi-field codes did not intrinsically produce a persistent “memory” of attractor states. These models, therefore, were not continuous attractor networks.","PeriodicalId":12363,"journal":{"name":"Frontiers in Computational Neuroscience","volume":"10 1","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-04-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140627809","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Prediction of emotion distribution of images based on weighted K-nearest neighbor-attention mechanism","authors":"Kai Cheng","doi":"10.3389/fncom.2024.1350916","DOIUrl":"https://doi.org/10.3389/fncom.2024.1350916","url":null,"abstract":"Existing methods for classifying image emotions often overlook the subjective impact emotions evoke in observers, focusing primarily on emotion categories. However, this approach falls short in meeting practical needs as it neglects the nuanced emotional responses captured within an image. This study proposes a novel approach employing the weighted closest neighbor algorithm to predict the discrete distribution of emotion in abstract paintings. Initially, emotional features are extracted from the images and assigned varying <jats:italic>K</jats:italic>-values. Subsequently, an encoder-decoder architecture is utilized to derive sentiment features from abstract paintings, augmented by a pre-trained model to enhance classification model generalization and convergence speed. By incorporating a blank attention mechanism into the decoder and integrating it with the encoder's output sequence, the semantics of abstract painting images are learned, facilitating precise and sensible emotional understanding. Experimental results demonstrate that the classification algorithm, utilizing the attention mechanism, achieves a higher accuracy of 80.7% compared to current methods. This innovative approach successfully addresses the intricate challenge of discerning emotions in abstract paintings, underscoring the significance of considering subjective emotional responses in image classification. The integration of advanced techniques such as weighted closest neighbor algorithm and attention mechanisms holds promise for enhancing the comprehension and classification of emotional content in visual art.","PeriodicalId":12363,"journal":{"name":"Frontiers in Computational Neuroscience","volume":"109 1","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-04-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140613294","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"U-shaped convolutional transformer GAN with multi-resolution consistency loss for restoring brain functional time-series and dementia diagnosis","authors":"Qiankun Zuo, Ruiheng Li, Binghua Shi, Jin Hong, Yanfei Zhu, Xuhang Chen, Yixian Wu, Jia Guo","doi":"10.3389/fncom.2024.1387004","DOIUrl":"https://doi.org/10.3389/fncom.2024.1387004","url":null,"abstract":"IntroductionThe blood oxygen level-dependent (BOLD) signal derived from functional neuroimaging is commonly used in brain network analysis and dementia diagnosis. Missing the BOLD signal may lead to bad performance and misinterpretation of findings when analyzing neurological disease. Few studies have focused on the restoration of brain functional time-series data.MethodsIn this paper, a novel <jats:italic>U</jats:italic>-shaped convolutional transformer GAN (UCT-GAN) model is proposed to restore the missing brain functional time-series data. The proposed model leverages the power of generative adversarial networks (GANs) while incorporating a <jats:italic>U</jats:italic>-shaped architecture to effectively capture hierarchical features in the restoration process. Besides, the multi-level temporal-correlated attention and the convolutional sampling in the transformer-based generator are devised to capture the global and local temporal features for the missing time series and associate their long-range relationship with the other brain regions. Furthermore, by introducing multi-resolution consistency loss, the proposed model can promote the learning of diverse temporal patterns and maintain consistency across different temporal resolutions, thus effectively restoring complex brain functional dynamics.ResultsWe theoretically tested our model on the public Alzheimer's Disease Neuroimaging Initiative (ADNI) dataset, and our experiments demonstrate that the proposed model outperforms existing methods in terms of both quantitative metrics and qualitative assessments. The model's ability to preserve the underlying topological structure of the brain functional networks during restoration is a particularly notable achievement.ConclusionOverall, the proposed model offers a promising solution for restoring brain functional time-series and contributes to the advancement of neuroscience research by providing enhanced tools for disease analysis and interpretation.","PeriodicalId":12363,"journal":{"name":"Frontiers in Computational Neuroscience","volume":"49 1","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-04-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140613436","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Reinforcement learning-based SDN routing scheme empowered by causality detection and GNN","authors":"Yuanhao He, Geyang Xiao, Jun Zhu, Tao Zou, Yuan Liang","doi":"10.3389/fncom.2024.1393025","DOIUrl":"https://doi.org/10.3389/fncom.2024.1393025","url":null,"abstract":"In recent years, with the rapid development of network applications and the increasing demand for high-quality network service, quality-of-service (QoS) routing has emerged as a critical network technology. The application of machine learning techniques, particularly reinforcement learning and graph neural network, has garnered significant attention in addressing this problem. However, existing reinforcement learning methods lack research on the causal impact of agent actions on the interactive environment, and graph neural network fail to effectively represent link features, which are pivotal for routing optimization. Therefore, this study quantifies the causal influence between the intelligent agent and the interactive environment based on causal inference techniques, aiming to guide the intelligent agent in improving the efficiency of exploring the action space. Simultaneously, graph neural network is employed to embed node and link features, and a reward function is designed that comprehensively considers network performance metrics and causality relevance. A centralized reinforcement learning method is proposed to effectively achieve QoS-aware routing in Software-Defined Networking (SDN). Finally, experiments are conducted in a network simulation environment, and metrics such as packet loss, delay, and throughput all outperform the baseline.","PeriodicalId":12363,"journal":{"name":"Frontiers in Computational Neuroscience","volume":"8 1","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-04-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140810083","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Predictive coding with spiking neurons and feedforward gist signaling","authors":"Kwangjun Lee, Shirin Dora, Jorge F. Mejias, Sander M. Bohte, Cyriel M. A. Pennartz","doi":"10.3389/fncom.2024.1338280","DOIUrl":"https://doi.org/10.3389/fncom.2024.1338280","url":null,"abstract":"Predictive coding (PC) is an influential theory in neuroscience, which suggests the existence of a cortical architecture that is constantly generating and updating predictive representations of sensory inputs. Owing to its hierarchical and generative nature, PC has inspired many computational models of perception in the literature. However, the biological plausibility of existing models has not been sufficiently explored due to their use of artificial neurons that approximate neural activity with firing rates in the continuous time domain and propagate signals synchronously. Therefore, we developed a spiking neural network for predictive coding (SNN-PC), in which neurons communicate using event-driven and asynchronous spikes. Adopting the hierarchical structure and Hebbian learning algorithms from previous PC neural network models, SNN-PC introduces two novel features: (1) a fast feedforward sweep from the input to higher areas, which generates a spatially reduced and abstract representation of input (i.e., a neural code for the gist of a scene) and provides a neurobiological alternative to an arbitrary choice of priors; and (2) a separation of positive and negative error-computing neurons, which counters the biological implausibility of a bi-directional error neuron with a very high baseline firing rate. After training with the MNIST handwritten digit dataset, SNN-PC developed hierarchical internal representations and was able to reconstruct samples it had not seen during training. SNN-PC suggests biologically plausible mechanisms by which the brain may perform perceptual inference and learning in an unsupervised manner. In addition, it may be used in neuromorphic applications that can utilize its energy-efficient, event-driven, local learning, and parallel information processing nature.","PeriodicalId":12363,"journal":{"name":"Frontiers in Computational Neuroscience","volume":"1 1","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-04-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140564352","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}