Frontiers in Computational Neuroscience最新文献

{"title":"A combinatorial deep learning method for Alzheimer's disease classification-based merging pretrained networks.","authors":"Houmem Slimi, Ala Balti, Sabeur Abid, Mounir Sayadi","doi":"10.3389/fncom.2024.1444019","DOIUrl":"10.3389/fncom.2024.1444019","url":null,"abstract":"<p><strong>Introduction: </strong>Alzheimer's disease (AD) is a progressive neurodegenerative disorder characterized by cognitive decline, memory loss, and impaired daily functioning. Despite significant research, AD remains incurable, highlighting the critical need for early diagnosis and intervention to improve patient outcomes. Timely detection plays a crucial role in managing the disease more effectively. Pretrained convolutional neural networks (CNNs) trained on large-scale datasets, such as ImageNet, have been employed for AD classification, providing a head start for developing more accurate models.</p><p><strong>Methods: </strong>This paper proposes a novel hybrid deep learning approach that combines the strengths of two specific pretrained architectures. The proposed model enhances the representation of AD-related patterns by leveraging the feature extraction capabilities of both networks. We validated this model using a large dataset of MRI images from AD patients. Performance was evaluated in terms of classification accuracy and robustness against noise, and the results were compared to several commonly used models in AD detection.</p><p><strong>Results: </strong>The proposed hybrid model demonstrated significant performance improvements over individual models, achieving an accuracy classification rate of 99.85%. Comparative analysis with other models further revealed the superiority of the new architecture, particularly in terms of classification rate and resistance to noise interference.</p><p><strong>Discussion: </strong>The high accuracy and robustness of the proposed hybrid model suggest its potential utility in early AD detection. By improving feature representation through the combination of two pretrained networks, this model could provide clinicians with a more reliable tool for early diagnosis and monitoring of AD progression. This approach holds promise for aiding in timely diagnoses and treatment decisions, contributing to better management of Alzheimer's disease.</p>","PeriodicalId":12363,"journal":{"name":"Frontiers in Computational Neuroscience","volume":null,"pages":null},"PeriodicalIF":2.1,"publicationDate":"2024-10-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11525984/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142557513","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Multi-scale asynchronous correlation and 2D convolutional autoencoder for adolescent health risk prediction with limited fMRI data.","authors":"Di Gao, Guanghao Yang, Jiarun Shen, Fang Wu, Chao Ji","doi":"10.3389/fncom.2024.1478193","DOIUrl":"https://doi.org/10.3389/fncom.2024.1478193","url":null,"abstract":"<p><strong>Introduction: </strong>Adolescence is a fundamental period of transformation, encompassing extensive physical, psychological, and behavioral changes. Effective health risk assessment during this stage is crucial for timely intervention, yet traditional methodologies often fail to accurately predict mental and behavioral health risks due to the intricacy of neural dynamics and the scarcity of quality-annotated fMRI datasets.</p><p><strong>Methods: </strong>This study introduces an innovative deep learning-based framework for health risk assessment in adolescents by employing a combination of a two-dimensional convolutional autoencoder (2DCNN-AE) with multi-sequence learning and multi-scale asynchronous correlation information extraction techniques. This approach facilitates the intricate analysis of spatial and temporal features within fMRI data, aiming to enhance the accuracy of the risk assessment process.</p><p><strong>Results: </strong>Upon examination using the Adolescent Risk Behavior (AHRB) dataset, which includes fMRI scans from 174 individuals aged 17-22, the proposed methodology exhibited a significant improvement over conventional models. It attained a precision of 83.116%, a recall of 84.784%, and an F1-score of 83.942%, surpassing standard benchmarks in most pertinent evaluative measures.</p><p><strong>Discussion: </strong>The results underscore the superior performance of the deep learning-based approach in understanding and predicting health-related risks in adolescents. It underscores the value of this methodology in advancing the precision of health risk assessments, offering an enhanced tool for early detection and potential intervention strategies in this sensitive developmental stage.</p>","PeriodicalId":12363,"journal":{"name":"Frontiers in Computational Neuroscience","volume":null,"pages":null},"PeriodicalIF":2.1,"publicationDate":"2024-10-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11518741/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142544667","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Optimizing extubation success: a comparative analysis of time series algorithms and activation functions.","authors":"Kuo-Yang Huang, Ching-Hsiung Lin, Shu-Hua Chi, Ying-Lin Hsu, Jia-Lang Xu","doi":"10.3389/fncom.2024.1456771","DOIUrl":"10.3389/fncom.2024.1456771","url":null,"abstract":"<p><strong>Background: </strong>The success and failure of extubation of patients with acute respiratory failure is a very important issue for clinicians, and the failure of the ventilator often leads to possible complications, which in turn leads to a lot of doubts about the medical treatment in the minds of the people, so in order to increase the success of extubation success of the doctors to prevent the possible complications, the present study compared different time series algorithms and different activation functions for the training and prediction of extubation success or failure models.</p><p><strong>Methods: </strong>This study compared different time series algorithms and different activation functions for training and predicting the success or failure of the extubation model.</p><p><strong>Results: </strong>The results of this study using four validation methods show that the GRU model and Tanh's model have a better predictive model for predicting the success or failure of the extubation and better predictive result of 94.44% can be obtained using Holdout cross-validation validation method.</p><p><strong>Conclusion: </strong>This study proposes a prediction method using GRU on the topic of extubation, and it can provide the doctors with the clinical application of extubation to give advice for reference.</p>","PeriodicalId":12363,"journal":{"name":"Frontiers in Computational Neuroscience","volume":null,"pages":null},"PeriodicalIF":2.1,"publicationDate":"2024-10-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11486667/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142461633","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Decoding the application of deep learning in neuroscience: a bibliometric analysis.","authors":"Yin Li, Zilong Zhong","doi":"10.3389/fncom.2024.1402689","DOIUrl":"10.3389/fncom.2024.1402689","url":null,"abstract":"<p><p>The application of deep learning in neuroscience holds unprecedented potential for unraveling the complex dynamics of the brain. Our bibliometric analysis, spanning from 2012 to 2023, delves into the integration of deep learning in neuroscience, shedding light on the evolutionary trends and identifying pivotal research hotspots. Through the examination of 421 articles, this study unveils a significant growth in interdisciplinary research, marked by the burgeoning application of deep learning techniques in understanding neural mechanisms and addressing neurological disorders. Central to our findings is the critical role of classification algorithms, models, and neural networks in advancing neuroscience, highlighting their efficacy in interpreting complex neural data, simulating brain functions, and translating theoretical insights into practical diagnostics and therapeutic interventions. Additionally, our analysis delineates a thematic evolution, showcasing a shift from foundational methodologies toward more specialized and nuanced approaches, particularly in areas like EEG analysis and convolutional neural networks. This evolution reflects the field's maturation and its adaptation to technological advancements. The study further emphasizes the importance of interdisciplinary collaborations and the adoption of cutting-edge technologies to foster innovation in decoding the cerebral code. The current study provides a strategic roadmap for future explorations, urging the scientific community toward areas ripe for breakthrough discoveries and practical applications. This analysis not only charts the past and present landscape of deep learning in neuroscience but also illuminates pathways for future research, underscoring the transformative impact of deep learning on our understanding of the brain.</p>","PeriodicalId":12363,"journal":{"name":"Frontiers in Computational Neuroscience","volume":null,"pages":null},"PeriodicalIF":2.1,"publicationDate":"2024-10-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11486706/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142461622","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Editorial: Understanding and bridging the gap between neuromorphic computing and machine learning, volume II.","authors":"Lei Deng, Huajin Tang, Kaushik Roy","doi":"10.3389/fncom.2024.1455530","DOIUrl":"https://doi.org/10.3389/fncom.2024.1455530","url":null,"abstract":"","PeriodicalId":12363,"journal":{"name":"Frontiers in Computational Neuroscience","volume":null,"pages":null},"PeriodicalIF":2.1,"publicationDate":"2024-10-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11484035/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142461623","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Multi-label remote sensing classification with self-supervised gated multi-modal transformers.","authors":"Na Liu, Ye Yuan, Guodong Wu, Sai Zhang, Jie Leng, Lihong Wan","doi":"10.3389/fncom.2024.1404623","DOIUrl":"https://doi.org/10.3389/fncom.2024.1404623","url":null,"abstract":"<p><strong>Introduction: </strong>With the great success of Transformers in the field of machine learning, it is also gradually attracting widespread interest in the field of remote sensing (RS). However, the research in the field of remote sensing has been hampered by the lack of large labeled data sets and the inconsistency of data modes caused by the diversity of RS platforms. With the rise of self-supervised learning (SSL) algorithms in recent years, RS researchers began to pay attention to the application of \"pre-training and fine-tuning\" paradigm in RS. However, there are few researches on multi-modal data fusion in remote sensing field. Most of them choose to use only one of the modal data or simply splice multiple modal data roughly.</p><p><strong>Method: </strong>In order to study a more efficient multi-modal data fusion scheme, we propose a multi-modal fusion mechanism based on gated unit control (MGSViT). In this paper, we pretrain the ViT model based on BigEarthNet dataset by combining two commonly used SSL algorithms, and propose an intra-modal and inter-modal gated fusion unit for feature learning by combining multispectral (MS) and synthetic aperture radar (SAR). Our method can effectively combine different modal data to extract key feature information.</p><p><strong>Results and discussion: </strong>After fine-tuning and comparison experiments, we outperform the most advanced algorithms in all downstream classification tasks. The validity of our proposed method is verified.</p>","PeriodicalId":12363,"journal":{"name":"Frontiers in Computational Neuroscience","volume":null,"pages":null},"PeriodicalIF":2.1,"publicationDate":"2024-09-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11458396/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142396925","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Analyzing top-down visual attention in the context of gamma oscillations: a layer- dependent network-of- networks approach.","authors":"Tianyi Zheng, Masato Sugino, Yasuhiko Jimbo, G Bard Ermentrout, Kiyoshi Kotani","doi":"10.3389/fncom.2024.1439632","DOIUrl":"https://doi.org/10.3389/fncom.2024.1439632","url":null,"abstract":"<p><p>Top-down visual attention is a fundamental cognitive process that allows individuals to selectively attend to salient visual stimuli in the environment. Recent empirical findings have revealed that gamma oscillations participate in the modulation of visual attention. However, computational studies face challenges when analyzing the attentional process in the context of gamma oscillation due to the unstable nature of gamma oscillations and the complexity induced by the layered fashion in the visual cortex. In this study, we propose a layer-dependent network-of-networks approach to analyze such attention with gamma oscillations. The model is validated by reproducing empirical findings on orientation preference and the enhancement of neuronal response due to top-down attention. We perform parameter plane analysis to classify neuronal responses into several patterns and find that the neuronal response to sensory and attention signals was modulated by the heterogeneity of the neuronal population. Furthermore, we revealed a counter-intuitive scenario that the excitatory populations in layer 2/3 and layer 5 exhibit opposite responses to the attentional input. By modification of the original model, we confirmed layer 6 plays an indispensable role in such cases. Our findings uncover the layer-dependent dynamics in the cortical processing of visual attention and open up new possibilities for further research on layer-dependent properties in the cerebral cortex.</p>","PeriodicalId":12363,"journal":{"name":"Frontiers in Computational Neuroscience","volume":null,"pages":null},"PeriodicalIF":2.1,"publicationDate":"2024-09-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11456483/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142389238","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Dynamical predictive coding with reservoir computing performs noise-robust multi-sensory speech recognition.","authors":"Yoshihiro Yonemura, Yuichi Katori","doi":"10.3389/fncom.2024.1464603","DOIUrl":"https://doi.org/10.3389/fncom.2024.1464603","url":null,"abstract":"<p><p>Multi-sensory integration is a perceptual process through which the brain synthesizes a unified perception by integrating inputs from multiple sensory modalities. A key issue is understanding how the brain performs multi-sensory integrations using a common neural basis in the cortex. A cortical model based on reservoir computing has been proposed to elucidate the role of recurrent connectivity among cortical neurons in this process. Reservoir computing is well-suited for time series processing, such as speech recognition. This inquiry focuses on extending a reservoir computing-based cortical model to encompass multi-sensory integration within the cortex. This research introduces a dynamical model of multi-sensory speech recognition, leveraging predictive coding combined with reservoir computing. Predictive coding offers a framework for the hierarchical structure of the cortex. The model integrates reliability weighting, derived from the computational theory of multi-sensory integration, to adapt to multi-sensory time series processing. The model addresses a multi-sensory speech recognition task, necessitating the management of complex time series. We observed that the reservoir effectively recognizes speech by extracting time-contextual information and weighting sensory inputs according to sensory noise. These findings indicate that the dynamic properties of recurrent networks are applicable to multi-sensory time series processing, positioning reservoir computing as a suitable model for multi-sensory integration.</p>","PeriodicalId":12363,"journal":{"name":"Frontiers in Computational Neuroscience","volume":null,"pages":null},"PeriodicalIF":2.1,"publicationDate":"2024-09-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11456454/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142389239","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Deep learning-based Alzheimer's disease detection: reproducibility and the effect of modeling choices.","authors":"Rosanna Turrisi, Alessandro Verri, Annalisa Barla","doi":"10.3389/fncom.2024.1360095","DOIUrl":"10.3389/fncom.2024.1360095","url":null,"abstract":"<p><strong>Introduction: </strong>Machine Learning (ML) has emerged as a promising approach in healthcare, outperforming traditional statistical techniques. However, to establish ML as a reliable tool in clinical practice, adherence to best practices in <i>data handling</i>, and <i>modeling design and assessment</i> is crucial. In this work, we summarize and strictly adhere to such practices to ensure reproducible and reliable ML. Specifically, we focus on Alzheimer's Disease (AD) detection, a challenging problem in healthcare. Additionally, we investigate the impact of modeling choices, including different data augmentation techniques and model complexity, on overall performance.</p><p><strong>Methods: </strong>We utilize Magnetic Resonance Imaging (MRI) data from the ADNI corpus to address a binary classification problem using 3D Convolutional Neural Networks (CNNs). Data processing and modeling are specifically tailored to address data scarcity and minimize computational overhead. Within this framework, we train 15 predictive models, considering three different data augmentation strategies and five distinct 3D CNN architectures with varying convolutional layers counts. The augmentation strategies involve affine transformations, such as <i>zoom, shift</i>, and <i>rotation</i>, applied either concurrently or separately.</p><p><strong>Results: </strong>The combined effect of data augmentation and model complexity results in up to 10% variation in prediction accuracy. Notably, when affine transformation are applied separately, the model achieves higher accuracy, regardless the chosen architecture. Across all strategies, the model accuracy exhibits a concave behavior as the number of convolutional layers increases, peaking at an intermediate value. The best model reaches excellent performance both on the internal and additional external testing set.</p><p><strong>Discussions: </strong>Our work underscores the critical importance of adhering to rigorous experimental practices in the field of ML applied to healthcare. The results clearly demonstrate how data augmentation and model depth-often overlooked factors- can dramatically impact final performance if not thoroughly investigated. This highlights both the necessity of exploring neglected modeling aspects and the need to comprehensively report all modeling choices to ensure reproducibility and facilitate meaningful comparisons across studies.</p>","PeriodicalId":12363,"journal":{"name":"Frontiers in Computational Neuroscience","volume":null,"pages":null},"PeriodicalIF":2.1,"publicationDate":"2024-09-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11451303/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142380448","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Electroencephalogram-based adaptive closed-loop brain-computer interface in neurorehabilitation: a review.","authors":"Wenjie Jin, XinXin Zhu, Lifeng Qian, Cunshu Wu, Fan Yang, Daowei Zhan, Zhaoyin Kang, Kaitao Luo, Dianhuai Meng, Guangxu Xu","doi":"10.3389/fncom.2024.1431815","DOIUrl":"10.3389/fncom.2024.1431815","url":null,"abstract":"<p><p>Brain-computer interfaces (BCIs) represent a groundbreaking approach to enabling direct communication for individuals with severe motor impairments, circumventing traditional neural and muscular pathways. Among the diverse array of BCI technologies, electroencephalogram (EEG)-based systems are particularly favored due to their non-invasive nature, user-friendly operation, and cost-effectiveness. Recent advancements have facilitated the development of adaptive bidirectional closed-loop BCIs, which dynamically adjust to users' brain activity, thereby enhancing responsiveness and efficacy in neurorehabilitation. These systems support real-time modulation and continuous feedback, fostering personalized therapeutic interventions that align with users' neural and behavioral responses. By incorporating machine learning algorithms, these BCIs optimize user interaction and promote recovery outcomes through mechanisms of activity-dependent neuroplasticity. This paper reviews the current landscape of EEG-based adaptive bidirectional closed-loop BCIs, examining their applications in the recovery of motor and sensory functions, as well as the challenges encountered in practical implementation. The findings underscore the potential of these technologies to significantly enhance patients' quality of life and social interaction, while also identifying critical areas for future research aimed at improving system adaptability and performance. As advancements in artificial intelligence continue, the evolution of sophisticated BCI systems holds promise for transforming neurorehabilitation and expanding applications across various domains.</p>","PeriodicalId":12363,"journal":{"name":"Frontiers in Computational Neuroscience","volume":null,"pages":null},"PeriodicalIF":2.1,"publicationDate":"2024-09-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11449715/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142380449","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}