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Plant specialized metabolism: Diversity of terpene synthases and their products 植物的特殊代谢：萜烯合成酶及其产物的多样性。
IF 8.3 2区 生物学
Current opinion in plant biology Pub Date : 2024-07-24 DOI: 10.1016/j.pbi.2024.102607
Matthew E. Bergman , Natalia Dudareva
{"title":"Plant specialized metabolism: Diversity of terpene synthases and their products","authors":"Matthew E. Bergman ,&nbsp;Natalia Dudareva","doi":"10.1016/j.pbi.2024.102607","DOIUrl":"10.1016/j.pbi.2024.102607","url":null,"abstract":"<div><p>Terpenoids are ubiquitous to all kingdoms of life and are one of the most diverse groups of compounds, both structurally and functionally. Despite being derived from common precursors, isopentenyl diphosphate and dimethylallyl diphosphate, their exceptional diversity is partly driven by the substrate and product promiscuity of terpene synthases that produce a wide array of terpene skeletons. Plant terpene synthases can be subdivided into different subfamilies based on sequence homology and function. However, in many cases, structural architecture of the enzyme is more essential to product specificity than primary sequence alone, and distantly related terpene synthases can often mediate similar reactions. As such, the focus of this brief review is on some of the recent progress in understanding terpene synthase function and diversity.</p></div>","PeriodicalId":11003,"journal":{"name":"Current opinion in plant biology","volume":"81 ","pages":"Article 102607"},"PeriodicalIF":8.3,"publicationDate":"2024-07-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141757636","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Recent advances in local and systemic nitrate signaling in Arabidopsis thaliana 拟南芥局部和系统硝酸盐信号的最新进展
IF 8.3 2区 生物学
Current opinion in plant biology Pub Date : 2024-07-20 DOI: 10.1016/j.pbi.2024.102605
Laura D. Delgado , Valentina Nunez-Pascual , Eleodoro Riveras , Sandrine Ruffel , Rodrigo A. Gutiérrez
{"title":"Recent advances in local and systemic nitrate signaling in Arabidopsis thaliana","authors":"Laura D. Delgado ,&nbsp;Valentina Nunez-Pascual ,&nbsp;Eleodoro Riveras ,&nbsp;Sandrine Ruffel ,&nbsp;Rodrigo A. Gutiérrez","doi":"10.1016/j.pbi.2024.102605","DOIUrl":"10.1016/j.pbi.2024.102605","url":null,"abstract":"<div><p>Nitrate is the most abundant form of inorganic nitrogen in aerobic soils, serving both as a nutrient and a signaling molecule. Central to nitrate signaling in higher plants is the intricate balance between local and systemic signaling and response pathways. The interplay between local and systemic responses allows plants to regulate their global gene expression, metabolism, physiology, growth, and development under fluctuating nitrate availability. This review offers an overview of recent discoveries regarding new players on nitrate sensing and signaling, in local and systemic contexts in <em>Arabidopsis thaliana</em>. Additionally, it addresses unanswered questions that warrant further investigation for a better understanding of nitrate signaling and responses in plants.</p></div>","PeriodicalId":11003,"journal":{"name":"Current opinion in plant biology","volume":"81 ","pages":"Article 102605"},"PeriodicalIF":8.3,"publicationDate":"2024-07-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141732067","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Stem-borne roots as a framework to study trans-organogenesis and uncover fundamental insights in developmental biology 将茎生根作为研究跨器官发生的框架，揭示发育生物学的基本观点
IF 8.3 2区 生物学
Current opinion in plant biology Pub Date : 2024-07-20 DOI: 10.1016/j.pbi.2024.102604
Amanda Rasmussen , Maria Laura Vidoz , Erin E. Sparks
{"title":"Stem-borne roots as a framework to study trans-organogenesis and uncover fundamental insights in developmental biology","authors":"Amanda Rasmussen ,&nbsp;Maria Laura Vidoz ,&nbsp;Erin E. Sparks","doi":"10.1016/j.pbi.2024.102604","DOIUrl":"10.1016/j.pbi.2024.102604","url":null,"abstract":"<div><p>Plants have a remarkable ability to generate organs with a different identity to the parent organ, called ‘trans-organogenesis’. An example of trans-organogenesis is the formation of roots from stems (a type of adventitious root), which is the first type of root that arose during plant evolution. Despite being ancestral, stem-borne roots are often contextualised through lateral root research, implying that lateral roots precede adventitious roots. In this review we challenge that idea, highlight what is known about stem-borne root development across the plant kingdom, the remarkable diversity in form and function, and the many remaining evolutionary questions. Exploring stem-borne root evolutionary development can enhance our understanding of developmental decision making and the processes by which cells acquire their fates.</p></div>","PeriodicalId":11003,"journal":{"name":"Current opinion in plant biology","volume":"81 ","pages":"Article 102604"},"PeriodicalIF":8.3,"publicationDate":"2024-07-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141732074","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Understanding plant responsiveness to microbiome feedbacks 了解植物对微生物群反馈的反应能力
IF 8.3 2区 生物学
Current opinion in plant biology Pub Date : 2024-07-17 DOI: 10.1016/j.pbi.2024.102603
Henry Janse van Rensburg , Katja Stengele , Klaus Schlaeppi
{"title":"Understanding plant responsiveness to microbiome feedbacks","authors":"Henry Janse van Rensburg ,&nbsp;Katja Stengele ,&nbsp;Klaus Schlaeppi","doi":"10.1016/j.pbi.2024.102603","DOIUrl":"10.1016/j.pbi.2024.102603","url":null,"abstract":"<div><p>Plant microbiome interactions are bidirectional with processes leading to microbiome assembly and processes leading to effects on plants, so called microbiome feedbacks. With belowground focus we systematically decomposed both of these directions into plant and (root and rhizosphere) microbiome components to identify methodological challenges and research priorities. We found that the bidirectionality of plant microbiome interactions presents a challenge for genetic studies. Establishing causality is particularly difficult when a plant mutant has both, an altered phenotype and an altered microbiome. Is the mutation directly affecting the microbiome (e.g., through root exudates), which then causes an altered phenotype of the plant and/or is the altered microbiome the consequence of the mutation altering the plant's phenotype (e.g., root architecture)? Here, we put forward that feedback experiments allow to separate cause and effect and furthermore, they are useful for investigating plant interactions with complex microbiomes in natural soils. They especially allow to investigate the plant genetic basis how plants respond to soil microbiomes and we stress that such microbiome feedbacks are understudied compared to the mechanisms contributing to microbiome assembly. Thinking towards application, this may allow to develop crops with both abilities to assemble a beneficial microbiome and to actively exploit its feedbacks.</p></div>","PeriodicalId":11003,"journal":{"name":"Current opinion in plant biology","volume":"81 ","pages":"Article 102603"},"PeriodicalIF":8.3,"publicationDate":"2024-07-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1369526624000943/pdfft?md5=107a1d3f8c323184b75991d3f09b6ce5&pid=1-s2.0-S1369526624000943-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141636494","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Time's up: Epigenetic clocks in plants 时间到了植物的表观遗传时钟
IF 8.3 2区 生物学
Current opinion in plant biology Pub Date : 2024-07-17 DOI: 10.1016/j.pbi.2024.102602
Binh Thanh Vo , Paloma Mas , Frank Johannes
{"title":"Time's up: Epigenetic clocks in plants","authors":"Binh Thanh Vo ,&nbsp;Paloma Mas ,&nbsp;Frank Johannes","doi":"10.1016/j.pbi.2024.102602","DOIUrl":"10.1016/j.pbi.2024.102602","url":null,"abstract":"<div><p>For over a decade, the animal field has led the way in using DNA methylation measurements to construct epigenetic clocks of aging. These clocks can predict organismal age with a level of accuracy that surpasses any other molecular proxy known to date. Evidence is finally emerging that epigenetic clocks also exist in plants. However, these clocks appear to differ from those in animals in some key aspects, including in their ability to measure time beyond the life span of an individual. Clock-like epigenetic changes can be found in plant circadian rhythms (scale: 24 h), during plant aging (scale: weeks/centuries), and across plant lineage evolution (scale: decades/millennia). Here, we provide a first classification of these different types of epigenetic clocks, highlight their main features, and discuss their biological basis.</p></div>","PeriodicalId":11003,"journal":{"name":"Current opinion in plant biology","volume":"81 ","pages":"Article 102602"},"PeriodicalIF":8.3,"publicationDate":"2024-07-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1369526624000931/pdfft?md5=60110a86ecbedd1f1d26aab21fa93e48&pid=1-s2.0-S1369526624000931-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141636473","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Chemical, pharmacological properties and biosynthesis of opioid mitragynine in Mitragyna speciosa (kratom) Mitragyna speciosa（桔梗）中阿片类物质丝氨酸的化学、药理特性和生物合成。
IF 8.3 2区 生物学
Current opinion in plant biology Pub Date : 2024-07-12 DOI: 10.1016/j.pbi.2024.102600
Jorge Jonathan Oswaldo Garza-Garcia, Yang Qu
{"title":"Chemical, pharmacological properties and biosynthesis of opioid mitragynine in Mitragyna speciosa (kratom)","authors":"Jorge Jonathan Oswaldo Garza-Garcia,&nbsp;Yang Qu","doi":"10.1016/j.pbi.2024.102600","DOIUrl":"10.1016/j.pbi.2024.102600","url":null,"abstract":"<div><p>Mitragynine, an alkaloid found in <em>Mitragyna speciosa</em> (kratom), shows promise as a potential alternative to opioids owing to its distinctive indole alkaloid structure and its capacity for pain relief, alleviation of opioid withdrawal symptoms, and anti-inflammatory effects. Recently the intricate process of mitragynine biosynthesis from the precursor strictosidine was elucidated, providing insights into the complex pathways responsible for synthesizing this opioid compound and its related diastereomers. As the search continues for the authentic hydroxylase and methyltransferase crucial for mitragynine formation, leveraging enzymes from other species and exploiting enzyme promiscuity has facilitated heterologous mitragynine biosynthesis in microbes. This highlights the extraordinary flexibility of enzymes in generating a spectrum of variations and analogs of kratom opioids within alternative biological systems.</p></div>","PeriodicalId":11003,"journal":{"name":"Current opinion in plant biology","volume":"81 ","pages":"Article 102600"},"PeriodicalIF":8.3,"publicationDate":"2024-07-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1369526624000918/pdfft?md5=ed10bb65de9dcb7bd75f5706aa0fba05&pid=1-s2.0-S1369526624000918-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141603426","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
How did plants evolve the prenylation of specialized phenolic metabolites by means of UbiA prenyltransferases? 植物是如何通过 UbiA 前酰基转移酶进化出特殊酚类代谢物的前酰基化的？
IF 8.3 2区 生物学
Current opinion in plant biology Pub Date : 2024-07-11 DOI: 10.1016/j.pbi.2024.102601
Ryosuke Munakata, Kazufumi Yazaki
{"title":"How did plants evolve the prenylation of specialized phenolic metabolites by means of UbiA prenyltransferases?","authors":"Ryosuke Munakata,&nbsp;Kazufumi Yazaki","doi":"10.1016/j.pbi.2024.102601","DOIUrl":"10.1016/j.pbi.2024.102601","url":null,"abstract":"<div><p>Prenylated phenolics occur in over 4000 species in the plant kingdom, most of which are known as specialized metabolites with high chemical diversity. Many of them have been identified as pharmacologically active compounds from various medicinal plants, in which prenyl residues play a key role in these activities. Prenyltransferases (PTs) responsible for their biosynthesis have been intensively studied in the last two decades. These enzymes are membrane-bound proteins belonging to the UbiA superfamily that occurs from bacteria to humans, and in particular those involved in plant specialized metabolism show strict specificities for both substrates and products. This article reviews the enzymatic features of plant UbiA PTs, including <em>C-</em> and <em>O</em>-prenylation, molecular evolution, and application of UbiA PTs in synthetic biology.</p></div>","PeriodicalId":11003,"journal":{"name":"Current opinion in plant biology","volume":"81 ","pages":"Article 102601"},"PeriodicalIF":8.3,"publicationDate":"2024-07-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S136952662400092X/pdfft?md5=fe9ce3f68d85d6ad0556f74b47caaa07&pid=1-s2.0-S136952662400092X-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141589891","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The MVPs (masterful versatile players): Chromatin factors as pivotal mediators between 3D genome organization and the response to environment MVPs（多面手）：染色质因子是三维基因组组织与环境响应之间的关键媒介
IF 8.3 2区 生物学
Current opinion in plant biology Pub Date : 2024-07-10 DOI: 10.1016/j.pbi.2024.102599
Chloé Dias Lopes , Xiaoning He , Federico Ariel , Leonardo I. Pereyra-Bistraín , Moussa Benhamed
{"title":"The MVPs (masterful versatile players): Chromatin factors as pivotal mediators between 3D genome organization and the response to environment","authors":"Chloé Dias Lopes ,&nbsp;Xiaoning He ,&nbsp;Federico Ariel ,&nbsp;Leonardo I. Pereyra-Bistraín ,&nbsp;Moussa Benhamed","doi":"10.1016/j.pbi.2024.102599","DOIUrl":"https://doi.org/10.1016/j.pbi.2024.102599","url":null,"abstract":"<div><p>In recent years, the study of genome dynamics has become a prominent research field due to its influence on understanding the control of gene expression. The study of 3D genome organization has unveiled multiple mechanisms in orchestrating chromosome folding. Growing evidence reveals that these mechanisms are not only important for genome organization, but play a pivotal role in enabling plants to adapt to environmental stimuli. In this review, we provide an overview of the current knowledge concerning epigenetic factors and regulatory elements driving 3D genome dynamics and their responses to external stimuli. We discuss the most recent findings, previous evidence, and explore their implications for future research.</p></div>","PeriodicalId":11003,"journal":{"name":"Current opinion in plant biology","volume":"81 ","pages":"Article 102599"},"PeriodicalIF":8.3,"publicationDate":"2024-07-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1369526624000906/pdfft?md5=27e977d58b30bc77879c2368f254303d&pid=1-s2.0-S1369526624000906-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141583406","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Decoding histone 3 lysine methylation: Insights into seed germination and flowering 组蛋白 3 赖氨酸甲基化解码：种子萌发和开花的启示
IF 8.3 2区 生物学
Current opinion in plant biology Pub Date : 2024-07-09 DOI: 10.1016/j.pbi.2024.102598
Saqlain Haider, Sara Farrona
{"title":"Decoding histone 3 lysine methylation: Insights into seed germination and flowering","authors":"Saqlain Haider,&nbsp;Sara Farrona","doi":"10.1016/j.pbi.2024.102598","DOIUrl":"10.1016/j.pbi.2024.102598","url":null,"abstract":"<div><p>Histone lysine methylation is a highly conserved epigenetic modification across eukaryotes that contributes to creating different dynamic chromatin states, which may result in transcriptional changes. Over the years, an accumulated set of evidence has shown that histone methylation allows plants to align their development with their surroundings, enabling them to respond and memorize past events due to changes in the environment. In this review, we discuss the molecular mechanisms of histone methylation in plants. Writers, readers, and erasers of Arabidopsis histone methylation marks are described with an emphasis on their role in two of the most important developmental transition phases in plants, seed germination and flowering. Further, the crosstalk between different methylation marks is also discussed. An overview of the mechanisms of histone methylation modifications and their biological outcomes will shed light on existing research gaps and may provide novel perspectives to increase crop yield and resistance in the era of global climate change.</p></div>","PeriodicalId":11003,"journal":{"name":"Current opinion in plant biology","volume":"81 ","pages":"Article 102598"},"PeriodicalIF":8.3,"publicationDate":"2024-07-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S136952662400089X/pdfft?md5=cda1a6216228b7d690385d3ca17946a5&pid=1-s2.0-S136952662400089X-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141579175","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Microtubule simulations in plant biology: A field coming to maturity 植物生物学中的微管模拟：一个即将成熟的领域
IF 8.3 2区 生物学
Current opinion in plant biology Pub Date : 2024-07-08 DOI: 10.1016/j.pbi.2024.102596
Marco Saltini, Eva E. Deinum
{"title":"Microtubule simulations in plant biology: A field coming to maturity","authors":"Marco Saltini,&nbsp;Eva E. Deinum","doi":"10.1016/j.pbi.2024.102596","DOIUrl":"10.1016/j.pbi.2024.102596","url":null,"abstract":"<div><p>The plant cortical microtubule array is an important determinant of cell wall structure and, therefore, plant morphology and physiology. The array consists of dynamic microtubules interacting through frequent collisions. Since the discovery by Dixit and Cyr (2004) that the outcome of such collisions depends on the collision angle, computer simulations have been indispensable in studying array behaviour. Over the last decade, the available simulation tools have drastically improved: multiple high-quality simulation platforms exist with specific strengths and applications. Here, we review how these platforms differ on the critical aspects of microtubule nucleation, flexibility, and local orienting cues; and how such differences affect array behaviour. Building upon concepts and control parameters from theoretical models of collective microtubule behaviour, we conclude that all these factors matter in the debate about what is most important for orienting the array: local cues like mechanical stresses or global cues deriving from the cell geometry.</p></div>","PeriodicalId":11003,"journal":{"name":"Current opinion in plant biology","volume":"81 ","pages":"Article 102596"},"PeriodicalIF":8.3,"publicationDate":"2024-07-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1369526624000876/pdfft?md5=470eec62e61f9cc4bf4080afa30311af&pid=1-s2.0-S1369526624000876-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141562913","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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