{"title":"Update on translational control modes in plant cell signaling","authors":"Mauricio A. Reynoso","doi":"10.1016/j.pbi.2025.102799","DOIUrl":"10.1016/j.pbi.2025.102799","url":null,"abstract":"<div><div>Protein synthesis can contribute to plant cell signaling at multiple regulatory levels. Recent studies have expanded the conditions that are directly impacted by translational regulation. This control can balance responses to developmental, environmental, and diverse stress stimuli. Processes with evidence of translational regulation include: immunity to bacterial pathogens, symbiotic interactions, abiotic responses, hormonal perception, light-dependent metabolism, and developmental programs for lateral root initiation, root hair growth, and sepal initiation. Translational control modes rely on the sequence and secondary structure of mRNAs due to the presence of upstream open reading frames (uORFs) and/or internal ribosome entry sites (IRES), protein-binding regions or structures, and the decoding of the epitranscriptomic mRNA modifications such as N<sup>6</sup>-methyladenosine, N<sup>4</sup>-acetylcytidine or pseudouridine. In addition, the post-translational modification of ribosomal proteins and eukaryotic initiation factors such as eIF4G, eIFiso4G, eIF2, as well as changes in ribosome protein composition contribute to translational control. These factors, mRNAs, regulatory proteins and other RNAs can be confined by the formation of biomolecular condensates such as stress granules, processing bodies and others, resulting in paths that modulate translation both globally and specifically. The covered topics place translation as a hub for cell responses during development and within the environmental context. Current understanding of translation has allowed the development of applications in crops, reinforcing the relevance of the study of translational control in plants.</div></div>","PeriodicalId":11003,"journal":{"name":"Current opinion in plant biology","volume":"88 ","pages":"Article 102799"},"PeriodicalIF":7.5,"publicationDate":"2025-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145211711","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"From genes to epidemics: Genomic insights into bacterial plant pathogen emergence.","authors":"Daniel Maddock, Michelle T Hulin","doi":"10.1016/j.pbi.2025.102765","DOIUrl":"10.1016/j.pbi.2025.102765","url":null,"abstract":"<p><p>Bacterial phytopathogens are major causal agents of newly emerging plant diseases. The roles of both agricultural practices and the alteration of bacterial genomic content are well understood in the evolution of novel pathogens. However, translating this knowledge into effective tools for the comparison, prediction and understanding of current outbreaks remains challenging. To be pathogenic bacteria must be able to avoid plant immune responses, colonize host tissue and cause disease. Recent advances in both sequencing technologies and imaging techniques have provided fascinating insights into how bacterial interactions with each other and mobile genetic elements play a role in virulence evolution. This review explores these interactions, with a focus on the role of mobile genetic elements in plant pathogen evolution. Special consideration is given to how recent technologies can be applied to allow the observation of these interactions in the field and the future directions required to integrate these tools in field-based monitoring to further understand and enhance early management practices.</p>","PeriodicalId":11003,"journal":{"name":"Current opinion in plant biology","volume":"87 ","pages":"102765"},"PeriodicalIF":7.5,"publicationDate":"2025-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144803853","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Plant trait variation shapes plant–microbe interactions in changing climate","authors":"Hyung-Woo Jeon , Yujeong Lim , Jong Hum Kim","doi":"10.1016/j.pbi.2025.102801","DOIUrl":"10.1016/j.pbi.2025.102801","url":null,"abstract":"<div><div>As the climate crisis intensifies, finding strategies to mitigate its cascading effects is now a pressing global priority for both scientists and policymakers. In agriculture and ecology, a key first step is to understand how changing environmental conditions affect plant–microbe interactions, especially given the knowledge gap between findings from controlled experiments and those from field studies. In this review, we highlight known fluctuations in host factors that mediate interactions with surrounding microorganisms under changing climate conditions and discuss potential future directions to alleviate the impacts of climate changes.</div></div>","PeriodicalId":11003,"journal":{"name":"Current opinion in plant biology","volume":"88 ","pages":"Article 102801"},"PeriodicalIF":7.5,"publicationDate":"2025-09-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145205874","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Ryan E. Martinez, Katherine A. Klimpel, Michael Busche, Jacob O. Brunkard
{"title":"Plant ribosomopathies: New insights and a critical re-evaluation of ribosomal protein gene mutants in plants","authors":"Ryan E. Martinez, Katherine A. Klimpel, Michael Busche, Jacob O. Brunkard","doi":"10.1016/j.pbi.2025.102791","DOIUrl":"10.1016/j.pbi.2025.102791","url":null,"abstract":"<div><div>Ribosomes are essential cellular machines that translate genetic information into functional proteins. Ribosomes require massive nutrient investments, accounting for as much as 50 % of organic phosphorus and 25 % of organic nitrogen in leaves. Optimizing ribosome levels could therefore reduce crop plant fertilizer requirements, an urgent goal for agricultural sustainability. Disruptions to ribosome biogenesis often cause surprising developmental defects, however, and there is substantial confusion and debate among plant geneticists about how to interpret mutant phenotypes caused by defective ribosomes. Here, we propose to adopt the conceptual framework of “ribosomopathies”, human disorders caused by defects in ribosome biogenesis, to better appreciate why some plant developmental processes are more sensitive to ribosome levels than others. We argue that understanding plant ribosomopathies as a broad class of mutants that affect ribosome homeostasis, rather than a series of distinct cases impacting specialized, heterogeneous ribosomes, will encourage productive mechanistic studies of specific ribosome-sensitive developmental processes that could be engineered to circumvent the deleterious effects of restricting ribosome availability.</div></div>","PeriodicalId":11003,"journal":{"name":"Current opinion in plant biology","volume":"88 ","pages":"Article 102791"},"PeriodicalIF":7.5,"publicationDate":"2025-09-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145154983","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Jessy Silva , Diana Moreira , Maria João Ferreira , Ana Marta Pereira , Luís Gustavo Pereira , Sílvia Coimbra
{"title":"Arabinogalactan proteins: Decoding the multifaceted roles in plant reproduction","authors":"Jessy Silva , Diana Moreira , Maria João Ferreira , Ana Marta Pereira , Luís Gustavo Pereira , Sílvia Coimbra","doi":"10.1016/j.pbi.2025.102800","DOIUrl":"10.1016/j.pbi.2025.102800","url":null,"abstract":"<div><div>Arabinogalactan proteins (AGPs) are highly glycosylated cell wall proteins essential for plant growth and reproduction. AGPs are extensively decorated with arabinogalactan polysaccharides, composed primarily of arabinose and galactose, along with minor sugars such as glucuronic acid, fucose, and rhamnose. Their glycosylation patterns and glycosylphosphatidylinositol anchor enable interactions with receptors, modulating signal transduction pathways critical for reproduction. AGPs also associate with cell wall components like pectin and hemicellulose, impacting cellulose deposition and cell wall integrity. Recent research highlights AGPs' role as calcium (Ca<sup>2+</sup>) capacitors, regulating Ca<sup>2+</sup> storage and release during crucial reproductive stages. Despite significant progress, their precise molecular mechanisms remain elusive. In this review, we explore the multifaceted roles of AGPs in plant reproduction, shedding light on the recent progress in their involvement in signalling pathways, cell wall interactions, and Ca<sup>2+</sup> homeostasis, while highlighting the ongoing research needed to fully understand their mechanisms in reproductive success.</div></div>","PeriodicalId":11003,"journal":{"name":"Current opinion in plant biology","volume":"88 ","pages":"Article 102800"},"PeriodicalIF":7.5,"publicationDate":"2025-09-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145154902","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Deciphering actomyosin functions in plant cytokinesis: A half-century odyssey","authors":"Bo Liu , Takumi Higaki , Yuh-Ru Julie Lee","doi":"10.1016/j.pbi.2025.102790","DOIUrl":"10.1016/j.pbi.2025.102790","url":null,"abstract":"<div><div>Half a century ago, it was discovered that in somatic plant cells actin microfilaments play a critical role in division plane orientation but not in cell plate assembly during cytokinesis. Because plant cytokinesis is brought about by the microtubule-based phragmoplast, the actomyosin system must be required for the centrifugally expanding phragmoplast to recognize the cortical division zone established by the microtubular preprophase band (PPB). It has been intriguing to learn how the two cytoskeletal elements communicate with each other in the two temporally separated cytokinetic apparatuses of the PPB and the phragmoplast. Half a century later, it is now clear that the PPB recruits the actomyosin system to the cortical division zone where the Myosin XI motors form macromolecular assemblies with Kinesin-12 motors and other microtubule-associated proteins. These Cytoskeleton-Associated Motor assemblies at the PPB site (CAMPs) play critical roles in the maintenance of the division site established by the PPB. They receive microtubules emanating from the edge of the expanding phragmoplast so that the developing cell plate can be inserted into the spatially defined position. Therefore, the actomyosin system joins microtubules to orchestrate the recognition of the PPB-defined position by the phragmoplast in order to execute cytokinesis in a spatiotemporally regulated manner in somatic plant cells.</div></div>","PeriodicalId":11003,"journal":{"name":"Current opinion in plant biology","volume":"88 ","pages":"Article 102790"},"PeriodicalIF":7.5,"publicationDate":"2025-09-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145148081","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Molecular puppeteering: Roles of Ustilago maydis effectors","authors":"Chibbhi Bhaskar , Neelima Chandrasekharan , Minh-Quang Chau , Lay-Sun Ma","doi":"10.1016/j.pbi.2025.102792","DOIUrl":"10.1016/j.pbi.2025.102792","url":null,"abstract":"<div><div>Effector proteins are central to the pathogenicity of filamentous fungi, particularly in smut fungi like <em>Ustilago maydis</em>, where impaired delivery of effectors into host cells results in attenuated virulence. This review outlines how <em>U. maydis</em> effectors function across diverse host compartments to manipulate host responses and induce tumor-like gall formation. We explore how effector studies uncover novel aspects of plant defense and highlight the evolutionary divergence between core and accessory effectors, shaped by host adaptation and selective pressure. Despite recent advances, challenges remain in characterizing poorly conserved or intrinsically disordered effectors. We emphasize the need for species-specific functional validation and improved tools, such as structural modeling, localization strategies, and maize genetic manipulation. Integrating structural and functional approaches will be essential to decipher effector mechanisms and the molecular arms race between smut fungi and their hosts, ultimately informing strategies for durable crop resistance.</div></div>","PeriodicalId":11003,"journal":{"name":"Current opinion in plant biology","volume":"88 ","pages":"Article 102792"},"PeriodicalIF":7.5,"publicationDate":"2025-09-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145106565","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"DNA methylation dynamics: patterns, regulation, and function","authors":"Jia Gwee, Wenwen Tian, Shuiming Qian, Xuehua Zhong","doi":"10.1016/j.pbi.2025.102787","DOIUrl":"10.1016/j.pbi.2025.102787","url":null,"abstract":"<div><div>As the crucial interface between the genome and the environment, the epigenome plays a key role in plant survival and thriving. Despite the identical DNA sequence in each nucleus of an individual, its interpretation by the cell is governed by both spatial and environmental contexts. The field of plant epigenetics is advancing rapidly with groundbreaking discoveries that are transforming our knowledge of how plants regulate gene expression, adapt to environmental changes, and uphold genomic stability. Recent technological advancements have also dramatically enhanced our ability to study the epigenome with precision, offering insights into its role at an unprecedented scale. Here, we highlight the latest findings focusing on the intricate balance of DNA methylation, the dynamic and multi-layered regulatory mechanisms, and the role and evolutionary significance of DNA methylation variations across diverse plant species. Understanding these variations in DNA methylation offers crucial insights into how plant epigenetic mechanisms regulate gene expression, genome organization, development, and responses to environmental changes.</div></div>","PeriodicalId":11003,"journal":{"name":"Current opinion in plant biology","volume":"88 ","pages":"Article 102787"},"PeriodicalIF":7.5,"publicationDate":"2025-09-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145091244","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Epigenetic processes involved in the activation of the DNA damage response in plants: A link to stress memory","authors":"Paula Casati","doi":"10.1016/j.pbi.2025.102789","DOIUrl":"10.1016/j.pbi.2025.102789","url":null,"abstract":"<div><div>Epigenetic memory refers to heritable information that is not encoded in the DNA sequence itself but is transmitted across generations through epigenetic modifications. These modifications can arise in response to environmental stimuli, such as heat stress or DNA-damaging conditions, and may persist across multiple generations. One of the primary epigenetic marks in plants is DNA methylation, whose role in stress memory is discussed in a separate review within this Special Issue. In this article, I will focus in one particular stress condition, genotoxic stress, that occurs after plants are exposed to internal or external agents that produce damage in the DNA. I will present and discuss various examples of the establishment, dynamics, and maintenance of epigenetic marks in plants that trigger the DNA damage response, along with their physiological consequences.</div></div>","PeriodicalId":11003,"journal":{"name":"Current opinion in plant biology","volume":"88 ","pages":"Article 102789"},"PeriodicalIF":7.5,"publicationDate":"2025-09-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145085357","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Complex of Proteins Associated with Set1 complexes and their increasing roles in crop improvement","authors":"Jun-Yu Chen , Pan-Yi Zhang , Cheng-Guo Duan","doi":"10.1016/j.pbi.2025.102788","DOIUrl":"10.1016/j.pbi.2025.102788","url":null,"abstract":"<div><div>The Complex of Proteins Associated with Set1 (COMPASS) complexes represent a group of highly conserved, multi-subunit complexes that catalyze histone H3 lysine 4 methylation across eukaryotic species. In <em>Drosophila</em> and mammals, COMPASS complexes are classified into distinct subtypes with diverse functions determined by their subunit composition. Plants have evolved analogous COMPASS assemblies that similarly exhibit functional diversification, playing pleiotropic roles in regulating vegetative growth, flowering transition, and stress adaptation. Recent studies have significantly advanced our understanding of the composition, chromatin targeting, and biological functions of plant COMPASS. In this review, we summarize the conserved core components of COMPASS in several plant species, the chromatin targeting strategies, crosstalk with other epigenetic marks, and regulatory role of COMPASS in stress adaptation. We also talk about the researches that may provide clues for crop improvement.</div></div>","PeriodicalId":11003,"journal":{"name":"Current opinion in plant biology","volume":"88 ","pages":"Article 102788"},"PeriodicalIF":7.5,"publicationDate":"2025-09-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145085290","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}