{"title":"Ultrafast probing of isotope-induced explicit symmetry breaking in ethylene.","authors":"Alessandro Nicola Nardi, Alexie Boyer, Yaowei Hu, Vincent Loriot, Franck Lépine, Morgane Vacher, Saikat Nandi","doi":"10.1038/s42004-025-01621-z","DOIUrl":"10.1038/s42004-025-01621-z","url":null,"abstract":"<p><p>Symmetry governs nature's laws, yet many of the natural phenomena occur due to the breakdown of symmetry. Here, we show how isotope-induced inversion symmetry breaking influences ultrafast photoisomerization processes in ethylene. Using extreme ultraviolet pump - near infrared probe time-of-flight mass spectrometry, we find that replacing one of the carbon atoms in ethylene with a <sup>13</sup>C isotope leads to twice-faster structural relaxation via ethylene-ethylidene isomerization in the photo-excited molecular cation. Advanced trajectory surface hopping calculations incorporating the nuclear symmetry of the molecular systems, reveal that it arises from the mixing of different normal modes in the isotope-substituted species, interactions otherwise forbidden by symmetry. Although the mixing does not alter the symmetry of the electronic Hamiltonian, it modifies that of the nuclear Hamiltonian, causing explicit symmetry breaking. This facilitates efficient intra-molecular vibrational energy redistribution, lowering the isomerization yield. Our findings offer opportunities to use isotope-induced nuclear symmetry breaking to control the outcome of light-molecule interactions across ultrafast timescales.</p>","PeriodicalId":10529,"journal":{"name":"Communications Chemistry","volume":"8 1","pages":"222"},"PeriodicalIF":6.2,"publicationDate":"2025-07-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12314038/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144759369","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Emanuele Casali, Andrea Gandini, Gabriele Merlo, Lorenzo Carli, Jan J Weigand, Alessio Porta, Giuseppe Zanoni
{"title":"Titanocenes functionalization with high chemical diversity via titanium protecting groups.","authors":"Emanuele Casali, Andrea Gandini, Gabriele Merlo, Lorenzo Carli, Jan J Weigand, Alessio Porta, Giuseppe Zanoni","doi":"10.1038/s42004-025-01624-w","DOIUrl":"10.1038/s42004-025-01624-w","url":null,"abstract":"<p><p>Titanocenes are well-recognized for their diverse applications in catalysis and biomedical research. Despite their potential, challenges related to stability and functionalization have limited broader utility, especially in medicinal chemistry. In this study, we present a strategy for the functionalization of titanocenes using a class of titanium protecting groups. This approach provides enhanced control over reactivity and significantly broadens the scope of structurally diverse modifications accessible for these complexes. Furthermore, we demonstrate the successful integration of a BODIPY fluorophore into titanocene-based systems, enabling advanced cellular imaging and visualizing the real perinuclear distribution of these organometallic compounds in living cell. The efficient incorporation of biomolecules such as biotin and cholesteryl derivatives through click-chemistry ligation underscores the potential of this method to facilitate the development of titanocene-based agents for pharmaceutical applications. By addressing previous limitations, this work paves the way for more effective utilization of titanocenes in both synthetic and biomedical fields.</p>","PeriodicalId":10529,"journal":{"name":"Communications Chemistry","volume":"8 1","pages":"221"},"PeriodicalIF":6.2,"publicationDate":"2025-07-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12310976/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144752625","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Cardiolipin acyl chain composition tailors the conformation of mammalian ATP synthase dimers.","authors":"M Makowski, V G Almendro-Vedia, I López-Montero","doi":"10.1038/s42004-025-01611-1","DOIUrl":"10.1038/s42004-025-01611-1","url":null,"abstract":"<p><p>The interplay between ATP synthase dimers and the four-tailed lipid cardiolipin (CL) shapes mitochondrial cristae structure and function. In the mitochondrial disorder Barth syndrome (BTHS), cristae membranes accumulate a less unsaturated, three-tailed form of cardiolipin (MLCL). These cristae become structurally and functionally compromised through mechanisms poorly understood. We have studied through molecular dynamics simulations how BTHS lipid composition affects the conformation of the ATP synthase dimer. The wedge-shaped transmembrane region of the ATP synthase dimer attracts cardiolipins through shape complementarity. MLCL showed decreased affinity for the dimer interface than CLs of the healthy model. A more heterogeneous lipid environment with a higher elastic strain promoted a dimer conformation that would stabilize wider intracrista spaces, and hence, less efficient OXPHOS reactions in BTHS. Our results provide clues on the role played by the CL acyl chain composition in the architecture and function of mitochondria in health and BTHS.</p>","PeriodicalId":10529,"journal":{"name":"Communications Chemistry","volume":"8 1","pages":"220"},"PeriodicalIF":6.2,"publicationDate":"2025-07-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12311173/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144752624","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
André T S Vicente, Sara P S P Moura, Jorge A R Salvador
{"title":"Synthesis, biological evaluation and clinical trials of Cereblon-based PROTACs.","authors":"André T S Vicente, Sara P S P Moura, Jorge A R Salvador","doi":"10.1038/s42004-025-01598-9","DOIUrl":"10.1038/s42004-025-01598-9","url":null,"abstract":"<p><p>PROteolysis-Targeting Chimeras (PROTACs) are an emerging class of molecules capable of inducing a forced approximation between a protein of interest (POI) and an E3 ligase enzyme (e.g., Cereblon), leading to the degradation of the POI by the cell's own machinery. Although in early stages of development, PROTACs' unique mechanisms of action offer a novel therapeutic strategy, which has attracted growing interest worldwide. Cereblon-based PROTACs are the most studied class of PROTACs and have been actively researched in recent years for the treatment of different diseases, from cancer to neurological disorders, with some of them already in clinical trials. In this review, we provide a comprehensive and critical analysis covering the recent advances, potential challenges and future prospects regarding the design and synthesis, as well as pre- and clinical evaluation of cereblon-based PROTACs. By integrating insights from drug discovery and development, a broad yet in-depth discussion is given to guide future research on cereblon-based PROTACs.</p>","PeriodicalId":10529,"journal":{"name":"Communications Chemistry","volume":"8 1","pages":"218"},"PeriodicalIF":6.2,"publicationDate":"2025-07-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12307952/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144741419","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Andreas Santamaria, Daniel Pereira, Nisha Pawar, Bernard T Kelly, Javier Carrascosa-Tejedor, Mariana Sardo, Luís Mafra, Giovanna Fragneto, David J Owen, Ildefonso Marín-Montesinos, Eduardo Guzmán, Nathan R Zaccai, Armando Maestro
{"title":"Structural molecular details of the endocytic adaptor protein CALM upon binding with phosphatidylinositol 4,5-bisphosphate-containing model membranes.","authors":"Andreas Santamaria, Daniel Pereira, Nisha Pawar, Bernard T Kelly, Javier Carrascosa-Tejedor, Mariana Sardo, Luís Mafra, Giovanna Fragneto, David J Owen, Ildefonso Marín-Montesinos, Eduardo Guzmán, Nathan R Zaccai, Armando Maestro","doi":"10.1038/s42004-025-01590-3","DOIUrl":"10.1038/s42004-025-01590-3","url":null,"abstract":"<p><p>Clathrin assembly lymphoid myeloid leukaemia protein (CALM) is involved in the formation of clathrin-mediated endocytic coats by virtue of binding many proteins involved in the process, including clathrin itself and AP2 cargo adaptor complex. CALM is able to specifically recognize the inner leaflet of the plasma membrane by binding the membrane's phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P<sub>2</sub>). Here, a quantitative biophysical approach -combining neutron/X-ray scattering, solid-state NMR, atomic force microscopy, and quartz crystal microbalance with dissipation monitoring-, was exploited to investigate CALM interaction with PtdIns(4,5)P<sub>2</sub>-presenting model membranes. The presented experimental data reveal CALM's folded domain partially embeds (12% volume occupancy) within the membrane, directly coordinating a cluster of 4 to 5 PtdIns(4,5)P<sub>2</sub> molecules via phosphate interactions. The N-terminal amphipathic helix inserts ~8 Å into the headgroup region, reducing local membrane stiffness by 36% (from 22 to 14 MPa) while increasing viscoelastic dissipation. These results establish a plausible threefold curvature-generation mechanism: PtdIns(4,5)P<sub>2</sub> clustering, helix insertion-induced lipid compaction and global mechanical softening-collectively lowering the energy barrier for membrane deformation.</p>","PeriodicalId":10529,"journal":{"name":"Communications Chemistry","volume":"8 1","pages":"219"},"PeriodicalIF":6.2,"publicationDate":"2025-07-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12307879/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144741418","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Sophia Thiele, Christopher J G Plummer, Laura Piveteau, Holger Frauenrath
{"title":"Dynamics of hydrogen-bonded end groups in bulk polymers revealed by solid-state NMR spectroscopy relaxation dispersion experiments.","authors":"Sophia Thiele, Christopher J G Plummer, Laura Piveteau, Holger Frauenrath","doi":"10.1038/s42004-025-01597-w","DOIUrl":"10.1038/s42004-025-01597-w","url":null,"abstract":"<p><p>The dynamic nature of supramolecular networks of telechelic polymers offers new avenues for the design of novel materials with enhanced melt strength and extensibility, increased energy at break, or self-healing properties. However, monitoring the kinetics of the underlying molecular-level scission-reaggregation events remains challenging, particularly in high-molar-mass polymers in the bulk state. Here, we employ solid-state <sup>1</sup>H NMR spectroscopy relaxation dispersion experiments to investigate the aggregation-scission dynamics in poly(ε-caprolactone) modified with oligopeptide end groups that form one-dimensional hydrogen-bonded aggregates. We have successfully determined the timescale of end-group dissociation directly and independently of any relaxation of the polymer segments at different temperatures in the bulk semi-crystalline and melt state. This site-specific, non-destructive method is applicable to entangled, high-molar-mass polymers without chemical modifications or modeling, provides critical insight into the dynamics of supramolecular networks in the bulk state, and promises to be a valuable tool for the directed development of next-generation functional materials.</p>","PeriodicalId":10529,"journal":{"name":"Communications Chemistry","volume":"8 1","pages":"217"},"PeriodicalIF":6.2,"publicationDate":"2025-07-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12304251/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144728386","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Weiyuan Xu, Zheng Cai, Fabio Carniato, Yi Lu, Xinjian Ye, Xinhui Xiao, Jiao Xu, Gengshen Mo, Yinghui Ding, Yong Jian, Xinzhong Ruan, Zhihan Yan, Fangfu Ye, Carlos Platas-Iglesias, Mauro Botta, Lixiong Dai
{"title":"Design of Mn(1,4-DO2A) derivatives as stable and inert contrast agents for magnetic resonance imaging.","authors":"Weiyuan Xu, Zheng Cai, Fabio Carniato, Yi Lu, Xinjian Ye, Xinhui Xiao, Jiao Xu, Gengshen Mo, Yinghui Ding, Yong Jian, Xinzhong Ruan, Zhihan Yan, Fangfu Ye, Carlos Platas-Iglesias, Mauro Botta, Lixiong Dai","doi":"10.1038/s42004-025-01615-x","DOIUrl":"10.1038/s42004-025-01615-x","url":null,"abstract":"<p><p>Manganese(II) is considered a valuable alternative to gadolinium(III) in developing contrast agents (CAs) for magnetic resonance imaging (MRI). However, due to the labile nature of common Mn(II) complexes, designing ligands that enable stable and inert complexation is essential before clinical application. Mn(1,4-Et4DO2A) bearing four ethyl groups, is found to have a log K<sub>MnL</sub> as high as 17.86, together with a pMn of 7.52 at pH 7.4. Kinetically, Mn(1,4-Et4DO2A) is approximately 20 times more inert than Mn(1,4-DO2A) in the presence of a 25-fold excess of Zn(II) at pH 6.0 and 37 °C, with the incorporation of a benzoic group to one pendant arm extending the half-life time (t<sub>1/2</sub>) to around 22 hours. Its r<sub>1</sub> is measured as 2.34 and 2.20 mM<sup>-1</sup> s<sup>-1</sup> at 310 K and 1.5 and 3.0 T, respectively, representing an approximate 50% increase compared to Mn(1,4-DO2A). Mn(1,4-Et4DO2A) shows hepatic preference in mice, and its efficacy in diagnosing orthotopic hepatocellular carcinoma (HCC) is also confirmed.</p>","PeriodicalId":10529,"journal":{"name":"Communications Chemistry","volume":"8 1","pages":"215"},"PeriodicalIF":6.2,"publicationDate":"2025-07-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12297526/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144717658","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
S Fatemeh Mousavi, Aisha Ahsan, Aaron Oechsle, Narmadha Devi, Yoshitaka Matsushita, Luiza Buimaga-Iarinca, Cristian Morari, Waka Nakanishi, Katsuhiko Ariga, Yutaka Wakayama, Yusuke Yamauchi, Thomas A Jung, Jonathan P Hill
{"title":"Emergence of conformational diversity and complexity of supramolecular structure by the interaction of a simple molecule with a uniform surface.","authors":"S Fatemeh Mousavi, Aisha Ahsan, Aaron Oechsle, Narmadha Devi, Yoshitaka Matsushita, Luiza Buimaga-Iarinca, Cristian Morari, Waka Nakanishi, Katsuhiko Ariga, Yutaka Wakayama, Yusuke Yamauchi, Thomas A Jung, Jonathan P Hill","doi":"10.1038/s42004-025-01607-x","DOIUrl":"10.1038/s42004-025-01607-x","url":null,"abstract":"<p><p>The emergence of complexity during self-assembly of simple molecular building blocks is an important aspect in the synthesis of nanoarchitectures from supramolecular functional units. In particular, two-dimensional nanostructures are important from the point-of-view of technological applications. Here, a remarkably complex on surface network is observed to form spontaneously from a single molecular module (porphyrin) having multiple site-specific conformations. The interplay of different physicochemical interactions at the surface contributes to the site-specific symmetry breaking of the porphyrin conformation, and was investigated at different substrates. Molecular conformational flexure, relocation in the corrugated surface potential, interactions with surface state electrons, and last but not least mutual intermolecular binding by hydrogen bonding at different elevations above the substrate are critical elements. We discuss the possibility of surfaces and interfaces causing quasidegeneracy of molecular configurations in supramolecular self-assembly, and the adsorbate-adsorbent interface as the driver for this system to behave counterintuitively to equilibrium thermodynamics.</p>","PeriodicalId":10529,"journal":{"name":"Communications Chemistry","volume":"8 1","pages":"214"},"PeriodicalIF":6.2,"publicationDate":"2025-07-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12290036/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144706598","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Towards net zero by data-driven discovery of sustainable cement alternatives.","authors":"Jack D Evans","doi":"10.1038/s42004-025-01608-w","DOIUrl":"10.1038/s42004-025-01608-w","url":null,"abstract":"","PeriodicalId":10529,"journal":{"name":"Communications Chemistry","volume":"8 1","pages":"213"},"PeriodicalIF":6.2,"publicationDate":"2025-07-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12289896/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144706600","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}