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Spectroscopic Constants of Chiral Isomers of Acetamide. 乙酰胺手性异构体的光谱常数。
IF 2.8 2区 化学
The Journal of Physical Chemistry A Pub Date : 2025-10-19 DOI: 10.1021/acs.jpca.5c04503
Roger D Amos, Rika Kobayashi
{"title":"Spectroscopic Constants of Chiral Isomers of Acetamide.","authors":"Roger D Amos, Rika Kobayashi","doi":"10.1021/acs.jpca.5c04503","DOIUrl":"https://doi.org/10.1021/acs.jpca.5c04503","url":null,"abstract":"<p><p>One of the major achievements of computational chemistry response theory is its ability to calculate atomic and molecular properties and, thus, aid experimentalists. Spectroscopists, in particular, have benefitted from theoretical modeling to help predict and interpret their spectra. In this paper, we continue previous work on providing highly accurate spectroscopic constants for interstellar molecules. We focus on the chiral isomers of acetamide, which are of particular interest for their speculated importance to the origins of life. In addition, we provide simulations of the VCD spectra of these molecules.</p>","PeriodicalId":59,"journal":{"name":"The Journal of Physical Chemistry A","volume":" ","pages":""},"PeriodicalIF":2.8,"publicationDate":"2025-10-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145327872","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Construction of 89Zr-Radiolabeled Melanin-Based Nanoprobes with FAP-Targeted Motifs for Tumor PET Imaging. 基于fap靶向基序的89zr放射标记黑色素纳米探针用于肿瘤PET成像的构建
IF 4.5 2区 医学
Molecular Pharmaceutics Pub Date : 2025-10-19 DOI: 10.1021/acs.molpharmaceut.5c01192
Xiaonan Wei, Chaoquan Lai, Xiaoyang Zhu, Aiyan Ji, Yeshan Qin, Shu Gao, Qiuyu Liu, Yonghao Li, Xuanyan Zhao, Hongyue Lou, Chunrong Qu, Zhen Cheng
{"title":"Construction of <sup>89</sup>Zr-Radiolabeled Melanin-Based Nanoprobes with FAP-Targeted Motifs for Tumor PET Imaging.","authors":"Xiaonan Wei, Chaoquan Lai, Xiaoyang Zhu, Aiyan Ji, Yeshan Qin, Shu Gao, Qiuyu Liu, Yonghao Li, Xuanyan Zhao, Hongyue Lou, Chunrong Qu, Zhen Cheng","doi":"10.1021/acs.molpharmaceut.5c01192","DOIUrl":"https://doi.org/10.1021/acs.molpharmaceut.5c01192","url":null,"abstract":"<p><p>Fibroblast activation protein (FAP) is an important target for the integrated diagnosis and treatment of tumors. However, FAP-targeted small molecule-based radiopharmaceuticals often face challenges such as low tumor uptake and short tumor retention, which hinder their biomedical and clinical applications. In this study, two radiolabeled FAP-targeted nanoprobes based on melanin nanoparticles (MNPs) were designed and developed in order to evaluate their potential for FAP-targeted theranostics. The excellent metal ion complexing property of melanin allowed <sup>89</sup>Zr to be efficiently labeled on the MNP platform. After PEGylated MNPs were modified with small molecules FAPI-04 and GPFAPI-04 and radiolabeled with <sup>89</sup>Zr to obtain [<sup>89</sup>Zr]Zr-F-MNPs and [<sup>89</sup>Zr]Zr-GPF-MNPs, these two nanoprobes achieved active targeting through FAPI ligands. The radiochemical purity of <sup>89</sup>Zr-labeled nanoprobes remained above 90% in fetal bovine serum (FBS) solution in 72 h. In vitro experiments showed that both [<sup>89</sup>Zr]Zr-F-MNPs and [<sup>89</sup>Zr]Zr-GPF-MNPs were taken up by FAP high-expressing U87MG cells (2.58 ± 0.07% vs 3.00 ± 0.10% for 2 h; 2.93 ± 0.08% vs 3.62 ± 0.04% for 4 h). For the in vivo study, at 48 h postinjection (p.i.) of the nanoprobe, the U87MG tumor uptake of [<sup>89</sup>Zr]Zr-F-MNPs and [<sup>89</sup>Zr]Zr-GPF-MNPs reached 4.83 ± 0.50% ID/g and 5.13 ± 0.38% ID/g, respectively. Blocking experiments further confirmed the FAP-dependent targeting ability. Neither of the two nanoprobes elicited observable adverse effects in vivo. In conclusion, the FAPI-MNPs-based nanoprobe platform, which integrates active targeting and passive accumulation, improves tumor uptake and retention time of FAP-targeted radioligands with excellent biosafety. This study offers a new strategy and platform for the development of FAP-targeted diagnostic and therapeutic probes with promising clinical translation potential.</p>","PeriodicalId":52,"journal":{"name":"Molecular Pharmaceutics","volume":" ","pages":""},"PeriodicalIF":4.5,"publicationDate":"2025-10-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145327890","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Glutathione-Responsive Polyhomocysteine Derivatives with Ultralow Toxicity toward Therapeutic Delivery. 超低毒性的谷胱甘肽响应型多同型半胱氨酸衍生物。
IF 5.4 2区 化学
Biomacromolecules Pub Date : 2025-10-19 DOI: 10.1021/acs.biomac.5c01014
Bowen Zhao, Xiao Zhang, Daniel Bilbao, Sandro Satta, Nicholas S Steele, Jiuyan Chen, Shiwei Fu, Molly S Bickle, Jun Gu, Ivan O Levkovsky, Elena F Ruiz, Jonah G Ferber, Fuwu Zhang
{"title":"Glutathione-Responsive Polyhomocysteine Derivatives with Ultralow Toxicity toward Therapeutic Delivery.","authors":"Bowen Zhao, Xiao Zhang, Daniel Bilbao, Sandro Satta, Nicholas S Steele, Jiuyan Chen, Shiwei Fu, Molly S Bickle, Jun Gu, Ivan O Levkovsky, Elena F Ruiz, Jonah G Ferber, Fuwu Zhang","doi":"10.1021/acs.biomac.5c01014","DOIUrl":"https://doi.org/10.1021/acs.biomac.5c01014","url":null,"abstract":"<p><p>Disulfide-containing synthetic polypeptides hold significant promise as biodegradable and biocompatible carriers for controlled drug and gene delivery, enabling triggered therapeutic release with reduced cytotoxicity. However, disulfide incorporation remains challenging, whether through direct polymerization of disulfide-containing monomers or postpolymerization modification. In this work, we present an innovative and simple strategy to incorporate disulfide bonds into polypeptides using ring-opening polymerization of the N-carboxyanhydride of homocysteine, a thiol-containing amino acid. The polymerization was well-controlled, yielding repeating units up to 100 with narrow dispersity. The pendant side chains were readily converted into various GSH-responsive moieties, including anionic, neutral, zwitterionic, and cationic groups, as well as therapeutic agents toward a wide range of biomedical applications. The drug-loaded amphiphilic polymer-drug conjugates displayed triggered release of intact drug and potent anticancer activities. Furthermore, cationic polyhomocysteine derivatives effectively delivered siRNA, eGFP mRNA, and more complex CRISPR components with extremely low cytotoxicity and excellent transfection efficiency.</p>","PeriodicalId":30,"journal":{"name":"Biomacromolecules","volume":" ","pages":""},"PeriodicalIF":5.4,"publicationDate":"2025-10-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145327909","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Multifunctional Polyphenolic Nanoparticle-Cross-Linked Aminoglycoside Hydrogels. 多功能多酚纳米颗粒-交联氨基糖苷水凝胶。
IF 5.4 2区 化学
Biomacromolecules Pub Date : 2025-10-19 DOI: 10.1021/acs.biomac.5c01289
Zhan Li, Jianhua Zhang, Hengjie Zhang, Tianyou Wang, Yuxian Song, Pengyu Liu, Yiwen Li, Hong Liu, Wancai Guo, Zhipeng Gu
{"title":"Multifunctional Polyphenolic Nanoparticle-Cross-Linked Aminoglycoside Hydrogels.","authors":"Zhan Li, Jianhua Zhang, Hengjie Zhang, Tianyou Wang, Yuxian Song, Pengyu Liu, Yiwen Li, Hong Liu, Wancai Guo, Zhipeng Gu","doi":"10.1021/acs.biomac.5c01289","DOIUrl":"https://doi.org/10.1021/acs.biomac.5c01289","url":null,"abstract":"<p><p>Multifunctional hydrogels with integrated antioxidant and antibacterial activities are vital for modulating the wound microenvironment, mitigating oxidative stress, and preventing infection. However, efficient construction of such hydrogels with programmable responsiveness and structural integrity that can be tailored to therapeutic demands remains challenging. Herein, we developed a modular, functionally programmable hydrogel platform constructed <i>via</i> an in situ Schiff base reaction between aldehyde-functionalized polyphenolic nanoparticles and aminoglycoside antibiotics. The resulting nanocomposite hydrogels exhibited excellent mechanical properties, pH-responsiveness, biodegradability, and biocompatibility, attributed to the synergistic interactions between the functional nanoscale building blocks and cross-linkers. <i>In vitro</i> and <i>in vivo</i> evaluations confirmed the hydrogel's potent antibacterial and antioxidant capabilities, enabling effective infection control and attenuation of oxidative stress in wound environments. This strategy offers a versatile route for engineering adaptive, multifunctional hydrogels for advanced wound management.</p>","PeriodicalId":30,"journal":{"name":"Biomacromolecules","volume":" ","pages":""},"PeriodicalIF":5.4,"publicationDate":"2025-10-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145327834","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Atmospheric Temperature Dependence of β-Caryophyllene Ozonolysis Kinetics Is Governed by Stabilized Prereactive Complexes. 大气温度对β-石竹烯臭氧分解动力学的依赖性由稳定的预反应配合物控制。
IF 2.8 2区 化学
The Journal of Physical Chemistry A Pub Date : 2025-10-19 DOI: 10.1021/acs.jpca.5c05523
Hengjia Ou, Kunpeng Chen
{"title":"Atmospheric Temperature Dependence of β-Caryophyllene Ozonolysis Kinetics Is Governed by Stabilized Prereactive Complexes.","authors":"Hengjia Ou, Kunpeng Chen","doi":"10.1021/acs.jpca.5c05523","DOIUrl":"https://doi.org/10.1021/acs.jpca.5c05523","url":null,"abstract":"<p><p>Atmospheric lifetime of volatile organic compounds (VOCs) is determined by oxidation kinetics, which is potentially sensitive to the change of temperature. However, the influence of temperature on the oxidation kinetics of large VOCs, such as sesquiterpenes, remains inadequately explored due to limited experimental data and insufficient accuracy of computations. In this study, we accurately simulate the temperature dependence (243-313 K) of ozonolysis kinetics of β-caryophyllene, a representative sesquiterpene in the atmosphere, by explicitly incorporating stabilized prereactive complexes (SPCs). Our results reveal that SPCs formed at the endocyclic C═C double bond primarily drive the temperature-dependent ozonolysis kinetics owing to their low energy barriers for forming primary ozonides (POZs). These endocyclic SPCs also exhibit a balance between the forward reaction and backward dissociation. In contrast, exocyclic SPCs, while more thermodynamically stable, are less reactive and tend to dissociate back into β-caryophyllene and ozone (O<sub>3</sub>). This mechanistic difference may explain why O<sub>3</sub> cycloaddition at the endocyclic C═C double bond dominates the ozonolysis kinetics of β-caryophyllene, despite the lower relative abundance of endocyclic SPCs compared to the exocyclic SPCs. The computed kinetics exhibits a pre-exponential factor of 2.0 × 10<sup>-15</sup> cm<sup>3</sup> molecule<sup>-1</sup> s<sup>-1</sup> and a negative activation energy of -4.4 kJ mol<sup>-1</sup>. Our computed temperature dependence factor is 529.8 K<sup>-1</sup>, which agrees with the experimental value (559 ± 97 K<sup>-1</sup>) in previous measurements. The SPC-incorporated computation further supports the accurate prediction of the pseudo-first-order atmospheric lifetime at different temperatures. Overall, this study demonstrates that incorporating SPCs into computational models can provide an effective framework for simulating VOC oxidation kinetics and thus atmospheric lifetimes at the extreme temperatures in climate change.</p>","PeriodicalId":59,"journal":{"name":"The Journal of Physical Chemistry A","volume":" ","pages":""},"PeriodicalIF":2.8,"publicationDate":"2025-10-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145327882","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Metabolic Flux Analysis Uncovers Substrate-Specific Reprogramming and ATP Deficit in CORT-Induced Depressive-like Astrocytes. 代谢通量分析揭示了皮质激素诱导的抑郁样星形胶质细胞中基质特异性重编程和ATP缺陷。
IF 3.6 2区 生物学
Journal of Proteome Research Pub Date : 2025-10-19 DOI: 10.1021/acs.jproteome.5c00667
Yunhao Zhao, Ting Linghu, Qi Wang, Xuemei Qin, Junsheng Tian
{"title":"Metabolic Flux Analysis Uncovers Substrate-Specific Reprogramming and ATP Deficit in CORT-Induced Depressive-like Astrocytes.","authors":"Yunhao Zhao, Ting Linghu, Qi Wang, Xuemei Qin, Junsheng Tian","doi":"10.1021/acs.jproteome.5c00667","DOIUrl":"https://doi.org/10.1021/acs.jproteome.5c00667","url":null,"abstract":"<p><p>Depression is closely associated with brain energy metabolism; however, its metabolic characteristics and the mechanisms underlying energy dysregulation remain poorly understood. In this study, we employed an in vitro depression model using corticosterone (CORT)-induced astrocytes and applied stable isotope-resolved metabolomics (SIRM) to trace the metabolic fate of [U-<sup>13</sup>C<sub>6</sub>]-glucose, [U-<sup>13</sup>C<sub>3</sub>]-lactate, and [U-<sup>13</sup>C<sub>5</sub>]-glutamine. Metabolic flux analysis (MFA) was subsequently used to quantify intracellular fluxes. CORT exposure triggered substrate-specific metabolic reprogramming: glucose and lactate catabolism were impaired, whereas glutamine utilization was upregulated. Despite increased glucose uptake and glycolytic flux, most glucose-derived carbon was shunted toward excessive lactate production rather than entering the tricarboxylic acid (TCA) cycle, resulting in a net lactate efflux. Concurrently, glutaminolysis was enhanced to partially compensate for reduced oxidative metabolism. These findings indicate that while glucose remains the dominant energy substrate, its preferential diversion to aerobic glycolysis markedly diminishes ATP production. Collectively, this work provides novel insights into astrocytic energy dysfunction in depression and highlights potential metabolic targets for therapeutic strategies aimed at restoring cerebral energy homeostasis.</p>","PeriodicalId":48,"journal":{"name":"Journal of Proteome Research","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2025-10-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145327839","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Characterizing Infrared Spectra of OH-·(H2O)2 and OH-·(H2O)3 with Constrained Nuclear-Electronic Orbital Molecular Dynamics. 用约束核电子轨道分子动力学表征OH-·(H2O)2和OH-·(H2O)3的红外光谱
IF 2.8 2区 化学
The Journal of Physical Chemistry A Pub Date : 2025-10-18 DOI: 10.1021/acs.jpca.5c04334
Zhe Liu, Yiwen Wang, Yuzhe Zhang, Nan Yang, Yang Yang
{"title":"Characterizing Infrared Spectra of OH<sup>-</sup>·(H<sub>2</sub>O)<sub>2</sub> and OH<sup>-</sup>·(H<sub>2</sub>O)<sub>3</sub> with Constrained Nuclear-Electronic Orbital Molecular Dynamics.","authors":"Zhe Liu, Yiwen Wang, Yuzhe Zhang, Nan Yang, Yang Yang","doi":"10.1021/acs.jpca.5c04334","DOIUrl":"10.1021/acs.jpca.5c04334","url":null,"abstract":"<p><p>The vibrational spectra of OH<sup>-</sup>·(H<sub>2</sub>O)<sub><i>n</i></sub> clusters for small <i>n</i> have been well established experimentally, with fundamental modes largely assigned. However, clear assignment of highly anharmonic modes and combination bands associated with strong hydrogen bonds, which often manifest as broad spectral features, remains challenging. In this work, we employ constrained nuclear-electronic orbital molecular dynamics (CNEO-MD) to provide detailed peak assignments and plausible physical interpretations for the vibrational spectra of OH<sup>-</sup>·(H<sub>2</sub>O)<sub>n</sub> clusters with <i>n</i> = 2 and 3. The CNEO framework incorporates nuclear quantum effects, particularly nuclear quantum delocalization, through the underlying effective potential energy surfaces. When combined with classical molecular dynamics, CNEO-MD further captures coupling effects between vibrational modes. Leveraging machine-learned potentials, we perform a series of temperature-dependent CNEO-MD simulations and use the resulting spectra to facilitate peak assignment. Our results largely confirm the experimental assignments reported by Johnson and coworkers [<i>J. Chem. Phys.</i> <b>2016</b>, 145, 134304], while also providing direct, physically grounded interpretations of previously unassigned features.</p>","PeriodicalId":59,"journal":{"name":"The Journal of Physical Chemistry A","volume":" ","pages":""},"PeriodicalIF":2.8,"publicationDate":"2025-10-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145318005","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Altered Abundance of Barrier-Related Proteins in Brain Microvascular Endothelial Cells of the GL261 Mouse Model of Glioblastoma. GL261小鼠胶质母细胞瘤模型脑微血管内皮细胞中屏障相关蛋白丰度的改变
IF 4.5 2区 医学
Molecular Pharmaceutics Pub Date : 2025-10-18 DOI: 10.1021/acs.molpharmaceut.5c00609
Liam M Koehn, Diana Cao, Joel R Steele, Angela Rigopoulos, Ingrid Jg Burvenich, Han Chung-Lee, Erwin Tanuwidjaya, Ralf B Schittenhelm, Andrew M Scott, Hui K Gan, Joseph A Nicolazzo
{"title":"Altered Abundance of Barrier-Related Proteins in Brain Microvascular Endothelial Cells of the GL261 Mouse Model of Glioblastoma.","authors":"Liam M Koehn, Diana Cao, Joel R Steele, Angela Rigopoulos, Ingrid Jg Burvenich, Han Chung-Lee, Erwin Tanuwidjaya, Ralf B Schittenhelm, Andrew M Scott, Hui K Gan, Joseph A Nicolazzo","doi":"10.1021/acs.molpharmaceut.5c00609","DOIUrl":"https://doi.org/10.1021/acs.molpharmaceut.5c00609","url":null,"abstract":"<p><p>Glioblastoma multiform (GBM) is a brain cancer that has limited treatment options and a high fatality rate, due in part to limited access of chemotherapeutics to the tumor resulting from the restrictive nature of the blood-brain barrier (BBB). The present study characterized the proteome of endothelial cells forming the BBB in a mouse model of GBM, as a way to identify putative transporters that could be exploited to enhance drug delivery in GBM. Female 6-8 week old C57BL/6 mice were intracranially injected with glioma 261 (GL261) cells or underwent a sham injection. After 28-29 days, brain endothelial cells (CD31+/CD45-) from GL261 (GBM-EC) and sham-injected (control-EC) mice were isolated using magnetic-activated cell sorting, and the proteome of cells was compared by untargeted liquid chromatography dual mass spectrometry. GBM-EC had significantly lower abundance of tight junction proteins (e.g., tight junction protein 1, 0.4-fold) and drug-metabolizing enzymes (e.g., glutathione-<i>S</i>-transferase A4, 0.4-fold) compared to control-EC, alongside an up- and down-regulation of drug transporters (e.g., long-chain fatty acid transport protein 4, 5-fold; adenosine triphosphate binding cassette transporter subfamily B member 1A, 0.3-fold). A large, 7-fold up-regulation of the endothelial cell surface receptor melanoma cell adhesion molecule (MCAM) and scavenger receptor class B member 1 (SCARB1) were identified in GBM-EC compared to control-EC. Immunohistochemistry confirmed cerebral endothelial localization of MCAM and SCARB1 in GBM, in addition to nonvascular patterning within the GBM, suggesting these receptors may be targets that could be exploited for drug delivery. The present study identified changes to BBB markers of paracellular permeability, as well as active and receptor-mediated transcellular transport that could present novel avenues to consider to enhance the permeability and GBM access of current and future therapeutics.</p>","PeriodicalId":52,"journal":{"name":"Molecular Pharmaceutics","volume":" ","pages":""},"PeriodicalIF":4.5,"publicationDate":"2025-10-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145311958","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Cell-Free-Based Thermophilic Biocatalyst for the Synthesis of Amino Acids from One-Carbon Feedstocks. 以单碳为原料合成氨基酸的无细胞嗜热生物催化剂。
IF 3.9 2区 生物学
ACS Synthetic Biology Pub Date : 2025-10-18 DOI: 10.1021/acssynbio.5c00352
Ray Westenberg, Shaafique Chowdhury, Ryan Cardiff, Kimberly Wennerholm, Alexander S Beliaev, James M Carothers, Pamela Peralta-Yahya
{"title":"Cell-Free-Based Thermophilic Biocatalyst for the Synthesis of Amino Acids from One-Carbon Feedstocks.","authors":"Ray Westenberg, Shaafique Chowdhury, Ryan Cardiff, Kimberly Wennerholm, Alexander S Beliaev, James M Carothers, Pamela Peralta-Yahya","doi":"10.1021/acssynbio.5c00352","DOIUrl":"https://doi.org/10.1021/acssynbio.5c00352","url":null,"abstract":"<p><p>Bioproduction from one-carbon compounds, such as formate, is an attractive prospect due to reduced energy requirements and the possibility for using CO<sub>2</sub> as a sustainable feedstock. Formate-fixing pathways engineered using <i>Escherichia coli</i> lysate-based cell-free expression (CFE) biocatalysts have the potential to route 100% of feedstock carbon toward chemical synthesis but are undermined by siphoning of in-pathway metabolites and cofactors by the CFE background metabolism. To address this limitation, we engineer a CFE-based thermophilic multienzyme biocatalyst for the synthesis of serine and glycine from formate, bicarbonate, and ammonia. After expression of the thermophilic formate-to-serine pathway in a one-pot reaction, the mesophilic <i>E. coli</i> CFE background machinery is removed by simple heat denaturation, eliminating the siphoning of cofactors, in-pathway metabolites, and products. After bioprocess optimization, including pathway gene expression duration and chemical synthesis temperature, we achieve near stoichiometric conversion of formate and bicarbonate to serine and glycine, reaching 97% of stoichiometric yield. The use of a moderately thermophilic biocatalyst allowed chemical synthesis to take place at mesophilic temperatures, enabling the balance of optimal enzyme activity with minimal metabolite/cofactor thermal degradation. In a fed-batch experiment, the biocatalyst shows sustained chemical synthesis rates for 8 h, paving the way toward a continuous bioprocess. Finally, a sensitivity analysis of cofactor usage revealed that the most expensive cofactors, THF and NADPH, can be reduced by 5-fold without significantly lowering product yields. To the best of our knowledge, this is the first instance of expressing a thermophilic pathway in an <i>E. coli</i> lysate-based CFE system to generate a thermophilic biocatalyst for use at mesophilic temperatures. The CFE-based thermophilic formate-to-serine biocatalyst triples the combined serine and glycine yield previously obtained by a CFE-based mesophilic formate-to-serine biocatalyst (30%), and quadruple the yield obtained by a purified enzyme system (22%). Ultimately, this work opens the door to using <i>E. coli</i> lysate-based CFE for thermophilic biocatalyst generation to achieve high chemical synthesis yields.</p>","PeriodicalId":26,"journal":{"name":"ACS Synthetic Biology","volume":" ","pages":""},"PeriodicalIF":3.9,"publicationDate":"2025-10-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145317991","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Structure, Dynamics, and Interfacial Behavior in Ionic Liquid-Alcohol Binary Mixtures: A Molecular Dynamics Simulation Study. 离子液体-酒精二元混合物的结构、动力学和界面行为:分子动力学模拟研究。
IF 2.9 2区 化学
The Journal of Physical Chemistry B Pub Date : 2025-10-18 DOI: 10.1021/acs.jpcb.5c05577
Maryam Behzadi, Maryam Heydari Dokoohaki, Amin Reza Zolghadr
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