Biological Procedures Online最新文献

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Deinococcus radiodurans-derived membrane vesicles protect HaCaT cells against H2O2-induced oxidative stress via modulation of MAPK and Nrf2/ARE pathways. 耐辐射球菌衍生的膜囊泡通过调节MAPK和Nrf2/ARE途径保护HaCaT细胞免受h2o2诱导的氧化应激。
IF 6.4 3区 生物学
Biological Procedures Online Pub Date : 2023-06-16 DOI: 10.1186/s12575-023-00211-4
Jeong Moo Han, Ha-Yeon Song, Jong-Hyun Jung, Sangyong Lim, Ho Seong Seo, Woo Sik Kim, Seung-Taik Lim, Eui-Baek Byun
{"title":"Deinococcus radiodurans-derived membrane vesicles protect HaCaT cells against H<sub>2</sub>O<sub>2</sub>-induced oxidative stress via modulation of MAPK and Nrf2/ARE pathways.","authors":"Jeong Moo Han,&nbsp;Ha-Yeon Song,&nbsp;Jong-Hyun Jung,&nbsp;Sangyong Lim,&nbsp;Ho Seong Seo,&nbsp;Woo Sik Kim,&nbsp;Seung-Taik Lim,&nbsp;Eui-Baek Byun","doi":"10.1186/s12575-023-00211-4","DOIUrl":"https://doi.org/10.1186/s12575-023-00211-4","url":null,"abstract":"<p><strong>Background: </strong>Deinococcus radiodurans is a robust bacterium that can withstand harsh environments that cause oxidative stress to macromolecules due to its cellular structure and physiological functions. Cells release extracellular vesicles for intercellular communication and the transfer of biological information; their payload reflects the status of the source cells. Yet, the biological role and mechanism of Deinococcus radiodurans-derived extracellular vesicles remain unclear.</p><p><strong>Aim: </strong>This study investigated the protective effects of membrane vesicles derived from D. radiodurans (R1-MVs) against H<sub>2</sub>O<sub>2</sub>-induced oxidative stress in HaCaT cells.</p><p><strong>Results: </strong>R1-MVs were identified as 322 nm spherical molecules. Pretreatment with R1-MVs inhibited H<sub>2</sub>O<sub>2</sub>-mediated apoptosis in HaCaT cells by suppressing the loss of mitochondrial membrane potential and reactive oxygen species (ROS) production. R1-MVs increased the superoxide dismutase (SOD) and catalase (CAT) activities, restored glutathione (GSH) homeostasis, and reduced malondialdehyde (MDA) production in H<sub>2</sub>O<sub>2</sub>-exposed HaCaT cells. Moreover, the protective effect of R1-MVs against H<sub>2</sub>O<sub>2</sub>-induced oxidative stress in HaCaT cells was dependent on the downregulation of mitogen-activated protein kinase (MAPK) phosphorylation and the upregulation of the nuclear factor E2-related factor 2 (Nrf2)/antioxidant response element (ARE) pathway. Furthermore, the weaker protective capabilities of R1-MVs derived from ΔDR2577 mutant than that of the wild-type R1-MVs confirmed our inferences and indicated that SlpA protein plays a crucial role in R1-MVs against H<sub>2</sub>O<sub>2</sub>-induced oxidative stress.</p><p><strong>Conclusion: </strong>Taken together, R1-MVs exert significant protective effects against H<sub>2</sub>O<sub>2</sub>-induced oxidative stress in keratinocytes and have the potential to be applied in radiation-induced oxidative stress models.</p>","PeriodicalId":8960,"journal":{"name":"Biological Procedures Online","volume":"25 1","pages":"17"},"PeriodicalIF":6.4,"publicationDate":"2023-06-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10273539/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9711624","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
A multi-omics analysis reveals CLSPN is associated with prognosis, immune microenvironment and drug resistance in cancers. 一项多组学分析显示CLSPN与癌症的预后、免疫微环境和耐药性有关。
IF 6.4 3区 生物学
Biological Procedures Online Pub Date : 2023-06-03 DOI: 10.1186/s12575-023-00201-6
Yihong Chen, Haicheng Wen, Yin Li, Ying Han, Jun Tan, Cao Guo, Changjing Cai, Ping Liu, Yinghui Peng, Yihan Liu, Xinwen Wang, Shan Zeng, Ziyang Feng, Hong Shen
{"title":"A multi-omics analysis reveals CLSPN is associated with prognosis, immune microenvironment and drug resistance in cancers.","authors":"Yihong Chen,&nbsp;Haicheng Wen,&nbsp;Yin Li,&nbsp;Ying Han,&nbsp;Jun Tan,&nbsp;Cao Guo,&nbsp;Changjing Cai,&nbsp;Ping Liu,&nbsp;Yinghui Peng,&nbsp;Yihan Liu,&nbsp;Xinwen Wang,&nbsp;Shan Zeng,&nbsp;Ziyang Feng,&nbsp;Hong Shen","doi":"10.1186/s12575-023-00201-6","DOIUrl":"https://doi.org/10.1186/s12575-023-00201-6","url":null,"abstract":"<p><strong>Background: </strong>Immunotherapy is effective only in limited patients. It is urgent to discover a novel biomarker to predict immune cells infiltration status and immunotherapy response of different cancers. CLSPN has been reported to play a pivotal role in various biological processes. However, a comprehensive analysis of CLSPN in cancers has not been conducted.</p><p><strong>Methods: </strong>To show the whole picture of CLSPN in cancers, a pan-cancer analysis was conducted in 9125 tumor samples across 33 cancer types by integrating transcriptomic, epigenomic and pharmacogenomics data. Moreover, the role of CLSPN in cancer was validated by CCK-8, EDU, colony formation and flow cytometry in vitro and tumor cell derived xenograft model in vivo.</p><p><strong>Results: </strong>CLSPN expression was generally upregulated in most cancer types and was significantly associated with prognosis in different tumor samples. Moreover, elevated CLSPN expression was closely correlated with immune cells infiltration, TMB (tumor mutational burden), MSI (microsatellite instability), MMR (mismatch repair), DNA methylation and stemness score across 33 cancer types. Enrichment analysis of functional genes revealed that CLSPN participated in the regulation of numerous signaling pathways involved in cell cycle and inflammatory response. The expression of CLSPN in LUAD patients were further analyzed at the single-cell level. Knockdown CLSPN significantly inhibited cancer cell proliferation and cell cycle related cyclin-dependent kinase (CDK) family and Cyclin family expression in LUAD (lung adenocarcinoma) both in vitro and in vivo experiments. Finally, we conducted structure-based virtual screening by modelling the structure of CHK1 kinase domain and Claspin phosphopeptide complex. The top five hit compounds were screened and validated by molecular docking and Connectivity Map (CMap) analysis.</p><p><strong>Conclusion: </strong>Our multi-omics analysis offers a systematic understanding of the roles of CLSPN in pan-cancer and provides a potential target for future cancer treatment.</p>","PeriodicalId":8960,"journal":{"name":"Biological Procedures Online","volume":"25 1","pages":"16"},"PeriodicalIF":6.4,"publicationDate":"2023-06-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10239117/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9627389","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Deep learning classification of uveal melanoma based on histopathological images and identification of a novel indicator for prognosis of patients. 基于组织病理图像的葡萄膜黑色素瘤深度学习分类和患者预后新指标的识别。
IF 6.4 3区 生物学
Biological Procedures Online Pub Date : 2023-06-02 DOI: 10.1186/s12575-023-00207-0
Qi Wan, Xiang Ren, Ran Wei, Shali Yue, Lixiang Wang, Hongbo Yin, Jing Tang, Ming Zhang, Ke Ma, Ying-Ping Deng
{"title":"Deep learning classification of uveal melanoma based on histopathological images and identification of a novel indicator for prognosis of patients.","authors":"Qi Wan,&nbsp;Xiang Ren,&nbsp;Ran Wei,&nbsp;Shali Yue,&nbsp;Lixiang Wang,&nbsp;Hongbo Yin,&nbsp;Jing Tang,&nbsp;Ming Zhang,&nbsp;Ke Ma,&nbsp;Ying-Ping Deng","doi":"10.1186/s12575-023-00207-0","DOIUrl":"https://doi.org/10.1186/s12575-023-00207-0","url":null,"abstract":"<p><strong>Background: </strong>Deep learning has been extensively used in digital histopathology. The purpose of this study was to test deep learning (DL) algorithms for predicting the vital status of whole-slide image (WSI) of uveal melanoma (UM).</p><p><strong>Methods: </strong>We developed a deep learning model (Google-net) to predict the vital status of UM patients from histopathological images in TCGA-UVM cohort and validated it in an internal cohort. The histopathological DL features extracted from the model and then were applied to classify UM patients into two subtypes. The differences between two subtypes in clinical outcomes, tumor mutation, and microenvironment, and probability of drug therapeutic response were investigated further.</p><p><strong>Results: </strong>We observed that the developed DL model can achieve a high accuracy of >  = 90% for patches and WSIs prediction. Using 14 histopathological DL features, we successfully classified UM patients into Cluster1 and Cluster2 subtypes. Compared to Cluster2, patients in the Cluster1 subtype have a poor survival outcome, increased expression levels of immune-checkpoint genes, higher immune-infiltration of CD8 + T cell and CD4 + T cells, and more sensitivity to anti-PD-1 therapy. Besides, we established and verified prognostic histopathological DL-signature and gene-signature which outperformed the traditional clinical features. Finally, a well-performed nomogram combining the DL-signature and gene-signature was constructed to predict the mortality of UM patients.</p><p><strong>Conclusions: </strong>Our findings suggest that DL model can accurately predict vital status in UM patents just using histopathological images. We found out two subgroups based on histopathological DL features, which may in favor of immunotherapy and chemotherapy. Finally, a well-performing nomogram that combines DL-signature and gene-signature was constructed to give a more straightforward and reliable prognosis for UM patients in treatment and management.</p>","PeriodicalId":8960,"journal":{"name":"Biological Procedures Online","volume":"25 1","pages":"15"},"PeriodicalIF":6.4,"publicationDate":"2023-06-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10239131/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9627386","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Correction: Isolation and characterization of apical papilla cells from root end of human third molar and their differentiation into cementoblast cells: an in vitro study. 更正:人第三磨牙根端根尖乳头细胞的分离和鉴定及其向成胶细胞的分化:一项体外研究。
IF 6.4 3区 生物学
Biological Procedures Online Pub Date : 2023-05-30 DOI: 10.1186/s12575-023-00202-5
Morvarid Ebadi, Amirfarhang Miresmaeili, Sarah Rajabi, Shahrokh Shojaei, Sareh Farhadi
{"title":"Correction: Isolation and characterization of apical papilla cells from root end of human third molar and their differentiation into cementoblast cells: an in vitro study.","authors":"Morvarid Ebadi,&nbsp;Amirfarhang Miresmaeili,&nbsp;Sarah Rajabi,&nbsp;Shahrokh Shojaei,&nbsp;Sareh Farhadi","doi":"10.1186/s12575-023-00202-5","DOIUrl":"https://doi.org/10.1186/s12575-023-00202-5","url":null,"abstract":"","PeriodicalId":8960,"journal":{"name":"Biological Procedures Online","volume":"25 1","pages":"14"},"PeriodicalIF":6.4,"publicationDate":"2023-05-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10227980/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9932906","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
TACE responser NDRG1 acts as a guardian against ferroptosis to drive tumorgenesis and metastasis in HCC. 在HCC中,TACE应答者NDRG1作为铁下垂的守护者,驱动肿瘤发生和转移。
IF 6.4 3区 生物学
Biological Procedures Online Pub Date : 2023-05-19 DOI: 10.1186/s12575-023-00199-x
Bufu Tang, Yajie Wang, Jinyu Zhu, Jingjing Song, Shiji Fang, Qiaoyou Weng, Yang Yang, Jianfei Tu, Zhongwei Zhao, Minjiang Chen, Min Xu, Weiqian Chen, Jiansong Ji
{"title":"TACE responser NDRG1 acts as a guardian against ferroptosis to drive tumorgenesis and metastasis in HCC.","authors":"Bufu Tang,&nbsp;Yajie Wang,&nbsp;Jinyu Zhu,&nbsp;Jingjing Song,&nbsp;Shiji Fang,&nbsp;Qiaoyou Weng,&nbsp;Yang Yang,&nbsp;Jianfei Tu,&nbsp;Zhongwei Zhao,&nbsp;Minjiang Chen,&nbsp;Min Xu,&nbsp;Weiqian Chen,&nbsp;Jiansong Ji","doi":"10.1186/s12575-023-00199-x","DOIUrl":"https://doi.org/10.1186/s12575-023-00199-x","url":null,"abstract":"<p><strong>Background: </strong>The treatment efficacy of transarterial chemoembolization (TACE) for hepatocellular carcinoma (HCC) varies widely between individuals. The aim of this study was to identify subtype landscapes and responser related to TACE, and further clarify the regulatory effect and corresponding mechanism of NDRG1 on HCC tumorgenesis and metastasis.</p><p><strong>Methods: </strong>The principal component analysis (PCA) algorithm was used to construct a TACE response scoring (TRscore) system. The random forest algorithm was applied to identify the TACE response-related core gene NDRG1 of HCC, and its role in the prognosis of HCC was explored. The role of NDRG1 in the progression and metastasis of HCC and functional mechanism were confirmed using several experimental methods.</p><p><strong>Results: </strong>Based on the GSE14520 and GSE104580 cohorts, we identified 2 TACE response-related molecular subtypes for HCC with significant differences in clinical features, and the TACE prognosis of Cluster A was significantly better than that of Cluster B (p < 0.0001). We then established the TRscore system and found that the low TRscore group showed a higher probability of survival and a lower rate of recurrence than the high TRscore group (p < 0.05) in both the HCC and TACE-treated HCC cohorts within the GSE14520 cohort. NDRG1 was determined to be the the hub gene associated with the TACE response of HCC and its high expression suggested a poor prognosis. Furthermore, The suppression of NDRG1 konckdown in tumorgenesis and metastasis of HCC was clarified in both vivo and vitro, which was importantly achieved through inducing ferroptosis in HCC cells, especially contributing to RLS3-induced ferroptosis.</p><p><strong>Conclusion: </strong>The constructed TACE response-related molecular subtypes and TRscores can specifically and accurately predict TACE prognosis for HCC. In addition, the TACE response-related hub gene NDRG1 may act as a guardian against ferroptosis to drive tumorgenesis and metastasis in HCC, which laid a new foundation for the development of new potential targeted therapy strategies to improve disease prognosis in HCC patients.</p>","PeriodicalId":8960,"journal":{"name":"Biological Procedures Online","volume":"25 1","pages":"13"},"PeriodicalIF":6.4,"publicationDate":"2023-05-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10197860/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9498498","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Correction: The role of three‑dimensional scaffolds based on polyglycerol sebacate/ polycaprolactone/ gelatin in the presence of Nanohydroxyapatite in promoting chondrogenic differentiation of human adipose‑derived mesenchymal stem cells. 更正:纳米羟基磷灰石存在下,基于聚甘油癸酸酯/聚己内酯/明胶的三维支架在促进人脂肪来源的间充质干细胞软骨分化中的作用。
IF 6.4 3区 生物学
Biological Procedures Online Pub Date : 2023-05-17 DOI: 10.1186/s12575-023-00209-y
Pardis Yousefi Talouki, Saeed Hesami Tackallou, Shahrokh Shojaei, Soheila Zamanlui Benisi, Vahabodin Goodarzi
{"title":"Correction: The role of three‑dimensional scaffolds based on polyglycerol sebacate/ polycaprolactone/ gelatin in the presence of Nanohydroxyapatite in promoting chondrogenic differentiation of human adipose‑derived mesenchymal stem cells.","authors":"Pardis Yousefi Talouki,&nbsp;Saeed Hesami Tackallou,&nbsp;Shahrokh Shojaei,&nbsp;Soheila Zamanlui Benisi,&nbsp;Vahabodin Goodarzi","doi":"10.1186/s12575-023-00209-y","DOIUrl":"https://doi.org/10.1186/s12575-023-00209-y","url":null,"abstract":"","PeriodicalId":8960,"journal":{"name":"Biological Procedures Online","volume":"25 1","pages":"12"},"PeriodicalIF":6.4,"publicationDate":"2023-05-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10189933/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9496334","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
BPTF in bone marrow provides a potential progression biomarker regulated by TFAP4 through the PI3K/AKT pathway in neuroblastoma. 骨髓中的BPTF通过PI3K/AKT通路在神经母细胞瘤中提供TFAP4调控的潜在进展生物标志物。
IF 6.4 3区 生物学
Biological Procedures Online Pub Date : 2023-05-11 DOI: 10.1186/s12575-023-00200-7
Chiyi Jiang, Yeran Yang, Sidou He, Zhixia Yue, Tianyu Xing, Ping Chu, Wenfa Yang, Hui Chen, Xiaoxi Zhao, Yongbo Yu, Xuan Zhang, Yan Su, Yongli Guo, Xiaoli Ma
{"title":"BPTF in bone marrow provides a potential progression biomarker regulated by TFAP4 through the PI3K/AKT pathway in neuroblastoma.","authors":"Chiyi Jiang,&nbsp;Yeran Yang,&nbsp;Sidou He,&nbsp;Zhixia Yue,&nbsp;Tianyu Xing,&nbsp;Ping Chu,&nbsp;Wenfa Yang,&nbsp;Hui Chen,&nbsp;Xiaoxi Zhao,&nbsp;Yongbo Yu,&nbsp;Xuan Zhang,&nbsp;Yan Su,&nbsp;Yongli Guo,&nbsp;Xiaoli Ma","doi":"10.1186/s12575-023-00200-7","DOIUrl":"https://doi.org/10.1186/s12575-023-00200-7","url":null,"abstract":"<p><strong>Background: </strong>Neuroblastoma (NB) is the most common extracranial malignant solid tumor in children, which is highly prone to bone marrow (BM) metastasis. BM can monitor early signs of mild disease and metastasis. Existing biomarkers are insufficient for the diagnosis and treatment of NB. Bromodomain PHD finger transcription factor (BPTF) is an important subunit of the chromatin-remodeling complex that is closely associated with tumors. Here, we evaluated whether BPTF in BM plays an important role in predicting NB progression, and explore the molecular mechanism of BPTF in NB.</p><p><strong>Methods: </strong>The clinical relevance of the BPTF was predicted in the GEO (GSE62564) and TARGET database. The biological function of BPTF in NB was investigated by constructing cell lines and employing BPTF inhibitor AU1. Western blot was used to determine the changes of BPTF, TFAP4, PI3K/AKT signaling and Epithelial-mesenchymal transition (EMT) related markers. A total of 109 children with newly diagnosed NB in Beijing Children's Hospital from January 2018 to March 2021 were included in this study. RT-PCR was used to measure the BPTF and TFAP4 expression in BM. The cut-off level was set at the median value of BPTF expression levels.</p><p><strong>Results: </strong>Databases suggested that BPTF expression was higher in NB and was significantly associated with stage and grade. Proliferation and migration of NB cells were slowed down when BPTF was silenced. Mechanistically, TFAP4 could positively regulate BPTF and promotes EMT process through activating the PI3K/AKT signaling pathway. Moreover, detection of the newly diagnosed BM specimens showed that BPTF expression was significantly higher in high-risk group, stage IV group and BM metastasis group. Children with high BPTF at initial diagnosis were considered to have high risk for disease progression and recurrence. BPTF is an independent risk factor for predicting NB progression.</p><p><strong>Conclusions: </strong>A novel and convenient BPTF-targeted humoral detection that can prompt minimal residual and predict NB progression in the early stages of the disease were identified. BPTF inhibitor AU1 is expected to become a new targeted drug for NB therapy. It's also reveal previously unknown mechanisms of BPTF in NB cell proliferation and metastasis through TFAP4 and PI3K/AKT pathways.</p>","PeriodicalId":8960,"journal":{"name":"Biological Procedures Online","volume":"25 1","pages":"11"},"PeriodicalIF":6.4,"publicationDate":"2023-05-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10176855/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9512862","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Exosomal microRNA-342-5p secreted from adipose-derived mesenchymal stem cells mitigates acute kidney injury in sepsis mice by inhibiting TLR9. 脂肪源性间充质干细胞分泌的外泌体microRNA-342-5p通过抑制TLR9减轻脓毒症小鼠的急性肾损伤。
IF 6.4 3区 生物学
Biological Procedures Online Pub Date : 2023-04-21 DOI: 10.1186/s12575-023-00198-y
Wei Liu, Chenghuan Hu, Buyao Zhang, Mingxia Li, Fuxing Deng, Shuangping Zhao
{"title":"Exosomal microRNA-342-5p secreted from adipose-derived mesenchymal stem cells mitigates acute kidney injury in sepsis mice by inhibiting TLR9.","authors":"Wei Liu,&nbsp;Chenghuan Hu,&nbsp;Buyao Zhang,&nbsp;Mingxia Li,&nbsp;Fuxing Deng,&nbsp;Shuangping Zhao","doi":"10.1186/s12575-023-00198-y","DOIUrl":"https://doi.org/10.1186/s12575-023-00198-y","url":null,"abstract":"<p><strong>Background: </strong>Sepsis-related acute kidney injury (AKI) is an inflammatory disease associated with extremely high mortality and health burden. This study explored the possibility of exosomes secreted by adipose-derived mesenchymal stem cells (AMSCs) serving as a carrier for microRNA (miR)-342-5p to alleviate sepsis-related AKI and investigated the possible mechanism.</p><p><strong>Methods: </strong>Serum was obtained from 30 patients with sepsis-associated AKI and 30 healthy volunteers for the measurement of miR-342-5p, blood urea nitrogen (BUN), and serum creatinine (SCr) levels. For in vitro experiments, AMSCs were transfected with LV-miR-342-5p or LV-miR-67 to acquire miR-342-5p-modified AMSCs and miR-67-modified AMSCs, from which the exosomes (AMSC-Exo-342 and AMSC-Exo-67) were isolated. The human renal proximal tubular epithelial cell line HK-2 was induced by lipopolysaccharide (LPS) to construct a cellular model of sepsis. The expression of Toll-like receptor 9 (TLR9) was also detected in AKI cells and mouse models. The interaction between miR-342-5p and TLR9 was predicted by dual luciferase reporter gene assay.</p><p><strong>Results: </strong>Detection on clinical serum samples showed that BUN, SCr, and TLR9 were elevated and miR-342-5p level was suppressed in the serum of patients with sepsis-associated AKI. Transfection with LV-miR-342-5p reinforced miR-342-5p expression in AMSCs and AMSC-secreted exosomes. miR-342-5p negatively targeted TLR9. LPS treatment enhanced TLR9 expression, reduced miR-342-5p levels, suppressed autophagy, and increased inflammation in HK-2 cells, while the opposite trends were observed in LPS-induced HK-2 cells exposed to AMSC-Exo-342, Rapa, miR-342-5p mimic, or si-TLR9. Additionally, the effects of AMSC-Exo-342 on autophagy and inflammation in LPS-induced cells could be weakened by 3-MA or pcDNA3.1-TLR9 treatment. Injection of AMSC-Exo-342 enhanced autophagy, mitigated kidney injury, suppressed inflammation, and reduced BUN and SCr levels in sepsis-related AKI mouse models.</p><p><strong>Conclusion: </strong>miR-342-5p transferred by exosomes from miR-342-5p-modified AMSCs ameliorated AKI by inhibiting TLR9 to accelerate autophagy.</p>","PeriodicalId":8960,"journal":{"name":"Biological Procedures Online","volume":"25 1","pages":"10"},"PeriodicalIF":6.4,"publicationDate":"2023-04-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10120132/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9477833","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
The role of three-dimensional scaffolds based on polyglycerol sebacate/ polycaprolactone/ gelatin in the presence of Nanohydroxyapatite in promoting chondrogenic differentiation of human adipose-derived mesenchymal stem cells. 纳米羟基磷灰石存在下的聚甘油脂酸酯/聚己内酯/明胶三维支架在促进人脂肪源间充质干细胞软骨分化中的作用。
IF 6.4 3区 生物学
Biological Procedures Online Pub Date : 2023-03-24 DOI: 10.1186/s12575-023-00197-z
Pardis Yousefi Talouki, Saeed Hesami Tackallou, Shahrokh Shojaei, Soheila Zamanlui Benisi, Vahabodin Goodarzi
{"title":"The role of three-dimensional scaffolds based on polyglycerol sebacate/ polycaprolactone/ gelatin in the presence of Nanohydroxyapatite in promoting chondrogenic differentiation of human adipose-derived mesenchymal stem cells.","authors":"Pardis Yousefi Talouki,&nbsp;Saeed Hesami Tackallou,&nbsp;Shahrokh Shojaei,&nbsp;Soheila Zamanlui Benisi,&nbsp;Vahabodin Goodarzi","doi":"10.1186/s12575-023-00197-z","DOIUrl":"https://doi.org/10.1186/s12575-023-00197-z","url":null,"abstract":"<p><strong>Background: </strong>Tissue engineering for cartilage regeneration has made great advances in recent years, although there are still challenges to overcome. This study aimed to evaluate the chondrogenic differentiation of human adipose-derived mesenchymal stem cells (hADSCs) on three-dimensional scaffolds based on polyglycerol sebacate (PGS) / polycaprolactone (PCL) / gelatin(Gel) in the presence of Nanohydroxyapatite (nHA).</p><p><strong>Materials and methods: </strong>In this study, a series of nHA-nanocomposite scaffolds were fabricated using 100:0:0, 60:40:0, and 60:20:20 weight ratios of PGS to PCL: Gel copolymers through salt leaching method. The morphology and porosity of prepared samples was characterized by SEM and EDX mapping analysis. Also, the dynamic contact angle and PBS adsorption tests are used to identify the effect of copolymerization and nanoparticles on scaffolds' hydrophilicity. The hydrolytic degradation properties were also analyzed. Furthermore, cell viability and proliferation as well as cell adhesion are evaluated to find out the biocompatibility. To determine the potential ability of nHA-nanocomposite scaffolds in chondrogenic differentiation, RT-PCR assay was performed to monitor the expression of collagen II, aggrecan, and Sox9 genes as markers of cartilage differentiation.</p><p><strong>Results: </strong>The nanocomposites had an elastic modulus within a range of 0.71-1.30 MPa and 0.65-0.43 MPa, in dry and wet states, respectively. The PGS/PCL sample showed a water contact angle of 72.44 ± 2.2°, while the hydrophilicity significantly improved by adding HA nanoparticles. It was found from the hydrolytic degradation study that HA incorporation can accelerate the degradation rate compared with PGS and PGS/PCL samples. Furthermore, the in vitro biocompatibility tests showed significant cell attachment, proliferation, and viability of adipose-derived mesenchymal stem cells (ADMSCs). RT-PCR also indicated a significant increase in collagen II, aggrecan and Sox9 mRNA levels.</p><p><strong>Conclusions: </strong>Our findings demonstrated that these nanocomposite scaffolds promote the differentiation of hADSCs into chondrocytes possibly by the increase in mRNA levels of collagen II, aggrecan, and Sox9 as markers of chondrogenic differentiation. In conclusion, the addition of PCL, Gelatin, and HA into PGS is a practical approach to adjust the general features of PGS to prepare a promising scaffold for cartilage tissue engineering.</p>","PeriodicalId":8960,"journal":{"name":"Biological Procedures Online","volume":"25 1","pages":"9"},"PeriodicalIF":6.4,"publicationDate":"2023-03-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10039520/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9478036","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Macrophage-Derived MMP-9 and MMP-2 are Closely Related to the Rupture of the Fibrous Capsule of Hepatocellular Carcinoma Leading to Tumor Invasion. 巨噬细胞来源的MMP-9和MMP-2与肝细胞癌纤维囊破裂导致肿瘤侵袭密切相关。
IF 6.4 3区 生物学
Biological Procedures Online Pub Date : 2023-03-14 DOI: 10.1186/s12575-023-00196-0
Quanwei Cui, Xuben Wang, Yongwei Zhang, Yiqing Shen, Yeben Qian
{"title":"Macrophage-Derived MMP-9 and MMP-2 are Closely Related to the Rupture of the Fibrous Capsule of Hepatocellular Carcinoma Leading to Tumor Invasion.","authors":"Quanwei Cui,&nbsp;Xuben Wang,&nbsp;Yongwei Zhang,&nbsp;Yiqing Shen,&nbsp;Yeben Qian","doi":"10.1186/s12575-023-00196-0","DOIUrl":"https://doi.org/10.1186/s12575-023-00196-0","url":null,"abstract":"<p><strong>Background: </strong>Hepatocellular carcinoma (HCC) is an aggressive tumor with a poor clinical prognosis. Rupture of the fibrous capsule (FC) is a very important clinical phenomenon in the invasion and metastasis of HCC. FC is mainly composed of type I collagen (COL1A1). However, it is not clear what caused the FC rupture. In this study, we aimed to determine whether the rupture of FC in HCC patients was related to macrophage-derived MMP-9 and MMP-2, and their clinical diagnostic value for FC rupture.</p><p><strong>Results: </strong>By performing immunohistochemical and immunofluorescence staining of ruptured FC and intact FC, the results showed that the ruptured area of FC aggregated a large number of macrophages with MMP-9 and MMP-2. Western blot analysis and Quantitative real-time PCR were used to assess the expression of MMP-9 and MMP-2 in the ruptured and relatively intact area of FC in ruptured FC patients, and the results revealed a significantly different expression of MMP-9 and MMP-2. ELISA experiments show that we could discriminate effectively between ruptured FC and intact FC by MMP-9 and MMP-2.</p><p><strong>Conclusions: </strong>Taken together, macrophage-derived MMP-9 and MMP-2 were closely related to the rupture of the FC of HCC and subsequently led to the migration and invasion of the tumor cells through the ruptured area of FC to the para cancer. It is suggested that when performing surgical resection, it is necessary to expand the range of tumor resection for patients with ruptured FC and hence reduce the possibility of recurrence and metastasis in HCC patients.</p>","PeriodicalId":8960,"journal":{"name":"Biological Procedures Online","volume":"25 1","pages":"8"},"PeriodicalIF":6.4,"publicationDate":"2023-03-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10012540/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9131299","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
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