Nonlinear biomedical physics最新文献

{"title":"On fractional order models for Hepatitis C.","authors":"E Ahmed, H A El-Saka","doi":"10.1186/1753-4631-4-1","DOIUrl":"10.1186/1753-4631-4-1","url":null,"abstract":"<p><p> In this paper we present a fractional order generalization of Perelson et al. basic hepatitis C virus (HCV) model including an immune response term. We argue that fractional order equations are more suitable than integer order ones in modeling complex systems which include biological systems. The model is presented and discussed. Also we argue that the added immune response term represents some basic properties of the immune system and that it should be included to study longer term behavior of the disease.</p>","PeriodicalId":87480,"journal":{"name":"Nonlinear biomedical physics","volume":"4 1","pages":"1"},"PeriodicalIF":0.0,"publicationDate":"2010-03-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2848051/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"28785006","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"On managing complex adaptive systems motivated by biosystems application to infections.","authors":"As Hegazi,&nbsp;Ah Hashish,&nbsp;E Ahmed","doi":"10.1186/1753-4631-3-11","DOIUrl":"https://doi.org/10.1186/1753-4631-3-11","url":null,"abstract":"<p><p> Many attempts to control Complex adaptive systems (CAS) have failed. Here we try to learn from biosystems to derive some principles for CAS management. An application to managing infections is given.</p>","PeriodicalId":87480,"journal":{"name":"Nonlinear biomedical physics","volume":"3 1","pages":"11"},"PeriodicalIF":0.0,"publicationDate":"2009-10-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1753-4631-3-11","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"28431424","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Influence of very low doses of mediators on fungal laccase activity - nonlinearity beyond imagination.","authors":"Elzbieta Malarczyk,&nbsp;Janina Kochmanska-Rdest,&nbsp;Anna Jarosz-Wilkolazka","doi":"10.1186/1753-4631-3-10","DOIUrl":"https://doi.org/10.1186/1753-4631-3-10","url":null,"abstract":"<p><p> Laccase, an enzyme responsible for aerobic transformations of natural phenolics, in industrial applications requires the presence of low-molecular substances known as mediators, which accelerate oxidation processes. However, the use of mediators is limited by their toxicity and the high costs of exploitation. The activation of extracellular laccase in growing fungal culture with highly diluted mediators, ABTS and HBT is described. Two high laccase-producing fungal strains, Trametes versicolor and Cerrena unicolor, were used in this study as a source of enzyme. Selected dilutions of the mediators significantly increased the activity of extracellular laccase during 14 days of cultivation what was distinctly visible in PAGE technique and in colorimetric tests. The same mediator dilutions increased demethylation properties of laccase, which was demonstrated during incubation of enzyme with veratric acid. It was established that the activation effect was assigned to specific dilutions of mediators. Our dose-response dilution process smoothly passes into the range of action of homeopathic dilutions and is of interest for homeopaths.</p>","PeriodicalId":87480,"journal":{"name":"Nonlinear biomedical physics","volume":"3 1","pages":"10"},"PeriodicalIF":0.0,"publicationDate":"2009-09-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1753-4631-3-10","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"28457098","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Disturbed functional brain networks and neurocognitive function in low-grade glioma patients: a graph theoretical analysis of resting-state MEG.","authors":"Ingeborg Bosma,&nbsp;Jaap C Reijneveld,&nbsp;Martin Klein,&nbsp;Linda Douw,&nbsp;Bob W van Dijk,&nbsp;Jan J Heimans,&nbsp;Cornelis J Stam","doi":"10.1186/1753-4631-3-9","DOIUrl":"https://doi.org/10.1186/1753-4631-3-9","url":null,"abstract":"<p><strong>Background: </strong>To understand neurophysiological mechanisms underlying cognitive dysfunction in low-grade glioma (LGG) patients by evaluating the spatial structure of 'resting-state' brain networks with graph theory.</p><p><strong>Methods: </strong>Standardized tests measuring 6 neurocognitive domains were administered in 17 LGG patients and 17 healthy controls. Magnetoencephalography (MEG) recordings were conducted during eyes-closed 'resting state'. The phase lag index (PLI) was computed in seven frequency bands to assess functional connectivity between brain areas. Spatial patterns were characterized with graph theoretical measures such as clustering coefficient (local connectivity), path length (global integration), network small world-ness (ratio of clustering coefficient/path length) and degree correlation (the extent to which connected nodes have similar degrees).</p><p><strong>Results: </strong>Compared to healthy controls, patients performed poorer on psychomotor functioning, attention, information processing, and working memory. Patients displayed higher short- and long-distance synchronization and clustering coefficient in the theta band, whereas a lower clustering coefficient and small world-ness were observed in the beta band. A lower degree correlation was found in the upper gamma band. LGG patients with higher clustering coefficient, longer path length, and lower degree correlations in delta and lower alpha band were characterized by poorer neurocognitive performance.</p><p><strong>Conclusion: </strong>LGG patients display higher short- and long-distance synchronization within the theta band. Network analysis revealed changes (in particularly the theta, beta, and upper gamma band) suggesting disturbed network architecture. Moreover, correlations between network characteristics and neurocognitive performance were found, Widespread changes in the strength and spatial organization of brain networks may be responsible for cognitive dysfunction in glioma patients.</p>","PeriodicalId":87480,"journal":{"name":"Nonlinear biomedical physics","volume":"3 1","pages":"9"},"PeriodicalIF":0.0,"publicationDate":"2009-08-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1753-4631-3-9","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"28428568","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Extracting complexity waveforms from one-dimensional signals.","authors":"Aleksandar Kalauzi,&nbsp;Tijana Bojić,&nbsp;Ljubisav Rakić","doi":"10.1186/1753-4631-3-8","DOIUrl":"https://doi.org/10.1186/1753-4631-3-8","url":null,"abstract":"<p><strong>Background: </strong>Nonlinear methods provide a direct way of estimating complexity of one-dimensional sampled signals through calculation of Higuchi's fractal dimension (1<FD<2). In most cases the signal is treated as being characterized by one value of FD and consequently analyzed as one epoch or, if divided into more epochs, often only mean and standard deviation of epoch FD are calculated. If its complexity variation (or running fractal dimension), FD(t), is to be extracted, a moving window (epoch) approach is needed. However, due to low-pass filtering properties of moving windows, short epochs are preferred. Since Higuchi's method is based on consecutive reduction of signal sampling frequency, it is not suitable for estimating FD of very short epochs (N < 100 samples).</p><p><strong>Results: </strong>In this work we propose a new and simple way to estimate FD for N < 100 by introducing 'normalized length density' of a signal epoch,where yn(i) represents the ith signal sample after amplitude normalization. The actual calculation of signal FD is based on construction of a monotonic calibration curve, FD = f(NLD), on a set of Weierstrass functions, for which FD values are given theoretically. The two existing methods, Higuchi's and consecutive differences, applied simultaneously on signals with constant FD (white noise and Brownian motion), showed that standard deviation of calculated window FD (FDw) increased sharply as the epoch became shorter. However, in case of the new NLD method a considerably lower scattering was obtained, especially for N < 30, at the expense of some lower accuracy in calculating average FDw. Consequently, more accurate reconstruction of FD waveforms was obtained when synthetic signals were analyzed, containig short alternating epochs of two or three different FD values. Additionally, scatter plots of FDw of an occipital human EEG signal for 10 sample epochs demontrated that Higuchi's estimations for some epochs exceeded the theoretical FD limits, while NLD-derived values did not.</p><p><strong>Conclusion: </strong>The presented approach was more accurate than the existing two methods in FD(t) extraction for very short epochs and could be used in physiological signals when FD is expected to change abruptly, such as short phasic phenomena or transient artefacts, as well as in other fields of science.</p>","PeriodicalId":87480,"journal":{"name":"Nonlinear biomedical physics","volume":"3 1","pages":"8"},"PeriodicalIF":0.0,"publicationDate":"2009-08-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1753-4631-3-8","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"28341434","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Simulation study of autoregulation responses of peripheral circulation to systemic pulsatility.","authors":"Federico Aletti,&nbsp;Ettore Lanzarone,&nbsp;Maria Laura Costantino,&nbsp;Giuseppe Baselli","doi":"10.1186/1753-4631-3-7","DOIUrl":"https://doi.org/10.1186/1753-4631-3-7","url":null,"abstract":"<p><strong>Background: </strong>This simulation study investigated potential modulations of total peripheral resistance (TPR), due to distributed peripheral vascular activity, by means of a lumped model of the arterial tree and a non linear model of microcirculation, inclusive of local controls of blood flow and tissue-capillary fluid exchange.</p><p><strong>Results: </strong>Numerical simulations of circulation were carried out to compute TPR under different conditions of blood flow pulsatility, and to extract the pressure-flow characteristics of the cardiovascular system. Simulations showed that TPR seen by the large arteries was increased in absence of pulsatility, while it decreased with an augmented harmonic content. This is a typically non linear effect due to the contribution of active, non linear autoregulation of the peripheral microvascular beds, which also generated a nonlinear relationship between arterial blood pressure and cardiac output.</p><p><strong>Conclusion: </strong>This simulation study, though focused on a simple effect attaining TPR modulation due to pulsatility, suggests that non-linear autoregulation mechanisms cannot be overlooked while studying the integrated behavior of the global cardiovascular system, including the arterial tree and the peripheral vascular bed.</p>","PeriodicalId":87480,"journal":{"name":"Nonlinear biomedical physics","volume":"3 1","pages":"7"},"PeriodicalIF":0.0,"publicationDate":"2009-07-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1753-4631-3-7","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"28327426","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Comparative study of nonlinear properties of EEG signals of normal persons and epileptic patients.","authors":"Md Nurujjaman,&nbsp;Ramesh Narayanan,&nbsp;An Sekar Iyengar","doi":"10.1186/1753-4631-3-6","DOIUrl":"https://doi.org/10.1186/1753-4631-3-6","url":null,"abstract":"<p><strong>Background: </strong>Investigation of the functioning of the brain in living systems has been a major effort amongst scientists and medical practitioners. Amongst the various disorder of the brain, epilepsy has drawn the most attention because this disorder can affect the quality of life of a person. In this paper we have reinvestigated the EEGs for normal and epileptic patients using surrogate analysis, probability distribution function and Hurst exponent.</p><p><strong>Results: </strong>Using random shuffled surrogate analysis, we have obtained some of the nonlinear features that was obtained by Andrzejak et al. [Phys Rev E 2001, 64:061907], for the epileptic patients during seizure. Probability distribution function shows that the activity of an epileptic brain is nongaussian in nature. Hurst exponent has been shown to be useful to characterize a normal and an epileptic brain and it shows that the epileptic brain is long term anticorrelated whereas, the normal brain is more or less stochastic. Among all the techniques, used here, Hurst exponent is found very useful for characterization different cases.</p><p><strong>Conclusion: </strong>In this article, differences in characteristics for normal subjects with eyes open and closed, epileptic subjects during seizure and seizure free intervals have been shown mainly using Hurst exponent. The H shows that the brain activity of a normal man is uncorrelated in nature whereas, epileptic brain activity shows long range anticorrelation.</p>","PeriodicalId":87480,"journal":{"name":"Nonlinear biomedical physics","volume":"3 1","pages":"6"},"PeriodicalIF":0.0,"publicationDate":"2009-07-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1753-4631-3-6","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"28318019","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Using the nonlinear control of anaesthesia-induced hypersensitivity of EEG at burst suppression level to test the effects of radiofrequency radiation on brain function.","authors":"Tarmo Lipping, Michael Rorarius, Ville Jäntti, Kari Annala, Ari Mennander, Rain Ferenets, Tommi Toivonen, Tim Toivo, Alpo Värri, Leena Korpinen","doi":"10.1186/1753-4631-3-5","DOIUrl":"10.1186/1753-4631-3-5","url":null,"abstract":"<p><strong>Background: </strong>In this study, investigating the effects of mobile phone radiation on test animals, eleven pigs were anaesthetised to the level where burst-suppression pattern appears in the electroencephalogram (EEG). At this level of anaesthesia both human subjects and animals show high sensitivity to external stimuli which produce EEG bursts during suppression. The burst-suppression phenomenon represents a nonlinear control system, where low-amplitude EEG abruptly switches to very high amplitude bursts. This switching can be triggered by very minor stimuli and the phenomenon has been described as hypersensitivity. To test if also radio frequency (RF) stimulation can trigger this nonlinear control, the animals were exposed to pulse modulated signal of a GSM mobile phone at 890 MHz. In the first phase of the experiment electromagnetic field (EMF) stimulation was randomly switched on and off and the relation between EEG bursts and EMF stimulation onsets and endpoints were studied. In the second phase a continuous RF stimulation at 31 W/kg was applied for 10 minutes. The ECG, the EEG, and the subcutaneous temperature were recorded.</p><p><strong>Results: </strong>No correlation between the exposure and the EEG burst occurrences was observed in phase I measurements. No significant changes were observed in the EEG activity of the pigs during phase II measurements although several EEG signal analysis methods were applied. The temperature measured subcutaneously from the pigs' head increased by 1.6 degrees C and the heart rate by 14.2 bpm on the average during the 10 min exposure periods.</p><p><strong>Conclusion: </strong>The hypothesis that RF radiation would produce sensory stimulation of somatosensory, auditory or visual system or directly affect the brain so as to produce EEG bursts during suppression was not confirmed.</p>","PeriodicalId":87480,"journal":{"name":"Nonlinear biomedical physics","volume":"3 1","pages":"5"},"PeriodicalIF":0.0,"publicationDate":"2009-07-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2723106/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"28312739","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Critical scale of propagation influences dynamics of waves in a model of excitable medium.","authors":"Joseph M Starobin,&nbsp;Christopher P Danford,&nbsp;Vivek Varadarajan,&nbsp;Andrei J Starobin,&nbsp;Vladimir N Polotski","doi":"10.1186/1753-4631-3-4","DOIUrl":"https://doi.org/10.1186/1753-4631-3-4","url":null,"abstract":"<p><strong>Background: </strong>Duration and speed of propagation of the pulse are essential factors for stability of excitation waves. We explore the propagation of excitation waves resulting from periodic stimulation of an excitable cable to determine the minimal stable pulse duration in a rate-dependent modification of a Chernyak-Starobin-Cohen reaction-diffusion model.</p><p><strong>Results: </strong>Various pacing rate dependent features of wave propagation were studied computationally and analytically. We demonstrated that the complexity of responses to stimulation and evolution of these responses from stable propagation to propagation block and alternans was determined by the proximity between the minimal level of the recovery variable and the critical excitation threshold for a stable solitary pulse.</p><p><strong>Conclusion: </strong>These results suggest that critical propagation of excitation waves determines conditions for transition to unstable rhythms in a way similar to unstable cardiac rhythms. Established conditions were suitably accurate regardless of rate dependent features and the magnitude of the slopes of restitution curves.</p>","PeriodicalId":87480,"journal":{"name":"Nonlinear biomedical physics","volume":"3 1","pages":"4"},"PeriodicalIF":0.0,"publicationDate":"2009-07-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1753-4631-3-4","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"28296345","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Comments on introducing the immune system.","authors":"E Ahmed","doi":"10.1186/1753-4631-3-3","DOIUrl":"https://doi.org/10.1186/1753-4631-3-3","url":null,"abstract":"<p><p> It is argued that by studying some design principles of the immune system, e.g. nonlinearity and being a complex adaptive system, one can easily find some explanations of basic properties of the system e.g. memory and tolerance.</p>","PeriodicalId":87480,"journal":{"name":"Nonlinear biomedical physics","volume":"3 1","pages":"3"},"PeriodicalIF":0.0,"publicationDate":"2009-06-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1753-4631-3-3","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"28237047","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}