Nonlinear biomedical physics最新文献

{"title":"Everything you wanted to ask about EEG but were afraid to get the right answer.","authors":"Wlodzimierz Klonowski","doi":"10.1186/1753-4631-3-2","DOIUrl":"https://doi.org/10.1186/1753-4631-3-2","url":null,"abstract":"<p><p> We answer several important questions concerning EEG. We also shortly discuss importance of nonlinear methods of contemporary physics in EEG analysis. Basic definitions and explanation of fundamental concepts may be found in my previous publications in NBP.It is a magnificent feeling to recognize the unity of complex phenomena which appear to be things quite apart from the direct visible truth.Albert Einstein.</p>","PeriodicalId":87480,"journal":{"name":"Nonlinear biomedical physics","volume":"3 1","pages":"2"},"PeriodicalIF":0.0,"publicationDate":"2009-05-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1753-4631-3-2","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"28199018","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Hilbert-Huang versus Morlet wavelet transformation on mismatch negativity of children in uninterrupted sound paradigm.","authors":"Fengyu Cong,&nbsp;Tuomo Sipola,&nbsp;Tiina Huttunen-Scott,&nbsp;Xiaonan Xu,&nbsp;Tapani Ristaniemi,&nbsp;Heikki Lyytinen","doi":"10.1186/1753-4631-3-1","DOIUrl":"https://doi.org/10.1186/1753-4631-3-1","url":null,"abstract":"<p><strong>Background: </strong>Compared to the waveform or spectrum analysis of event-related potentials (ERPs), time-frequency representation (TFR) has the advantage of revealing the ERPs time and frequency domain information simultaneously. As the human brain could be modeled as a complicated nonlinear system, it is interesting from the view of psychological knowledge to study the performance of the nonlinear and linear time-frequency representation methods for ERP research. In this study Hilbert-Huang transformation (HHT) and Morlet wavelet transformation (MWT) were performed on mismatch negativity (MMN) of children. Participants were 102 children aged 8-16 years. MMN was elicited in a passive oddball paradigm with duration deviants. The stimuli consisted of an uninterrupted sound including two alternating 100 ms tones (600 and 800 Hz) with infrequent 50 ms or 30 ms 600 Hz deviant tones. In theory larger deviant should elicit larger MMN. This theoretical expectation is used as a criterion to test two TFR methods in this study. For statistical analysis MMN support to absence ratio (SAR) could be utilized to qualify TFR of MMN.</p><p><strong>Results: </strong>Compared to MWT, the TFR of MMN with HHT was much sharper, sparser, and clearer. Statistically, SAR showed significant difference between the MMNs elicited by two deviants with HHT but not with MWT, and the larger deviant elicited MMN with larger SAR.</p><p><strong>Conclusion: </strong>Support to absence ratio of Hilbert-Huang Transformation on mismatch negativity meets the theoretical expectations, i.e., the more deviant stimulus elicits larger MMN. However, Morlet wavelet transformation does not reveal that. Thus, HHT seems more appropriate in analyzing event-related potentials in the time-frequency domain. HHT appears to evaluate ERPs more accurately and provide theoretically valid information of the brain responses.</p>","PeriodicalId":87480,"journal":{"name":"Nonlinear biomedical physics","volume":"3 1","pages":"1"},"PeriodicalIF":0.0,"publicationDate":"2009-02-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1753-4631-3-1","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"27961904","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Recognizing brain activities by functional near-infrared spectroscope signal analysis.","authors":"Truong Quang Dang Khoa,&nbsp;Masahiro Nakagawa","doi":"10.1186/1753-4631-2-3","DOIUrl":"https://doi.org/10.1186/1753-4631-2-3","url":null,"abstract":"<p><strong>Background: </strong>Functional Near-Infrared Spectroscope (fNIRs) is one of the latest technologies which utilize light in the near-infrared range to determine brain activities. Near-infrared technology allows design of safe, portable, wearable, non-invasive and wireless qualities monitoring systems. This indicates that fNIRs signal monitoring of brain hemodynamics can be value in helping to understand brain tasks. In this paper, we present results of fNIRs signal analysis to show that there exist distinct patterns of hemodynamic responses which recognize brain tasks toward developing a Brain-Computer interface.</p><p><strong>Results: </strong>We applied Higuchi's fractal dimension algorithms to analyse irregular and complex characteristics of fNIRs signals, and then Wavelets transform is used to analysis for preprocessing as signal filters and feature extractions and Neural networks is a module for cognition brain tasks.</p><p><strong>Conclusion: </strong>Throughout two experiments, we have demonstrated the feasibility of fNIRs analysis to recognize human brain activities.</p>","PeriodicalId":87480,"journal":{"name":"Nonlinear biomedical physics","volume":" ","pages":"3"},"PeriodicalIF":0.0,"publicationDate":"2008-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1753-4631-2-3","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40545913","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Global behavior of epidemic transmission on heterogeneous networks via two distinct routes.","authors":"Haifeng Zhang, Michael Small, Xinchu Fu","doi":"10.1186/1753-4631-2-2","DOIUrl":"10.1186/1753-4631-2-2","url":null,"abstract":"<p><p> In the study of epidemic spreading two natural questions are: whether the spreading of epidemics on heterogenous networks have multiple routes, and whether the spreading of an epidemic is a local or global behavior? In this paper, we answer the above two questions by studying the SIS model on heterogenous networks, and give the global conditions for the endemic state when two distinct routes with uniform rate of infection are considered. The analytical results are also verified by numerical simulations.</p>","PeriodicalId":87480,"journal":{"name":"Nonlinear biomedical physics","volume":"2 1","pages":"2"},"PeriodicalIF":0.0,"publicationDate":"2008-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2409347/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"27417529","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Force plate monitoring of human hemodynamics.","authors":"Jan Kríz,&nbsp;Petr Seba","doi":"10.1186/1753-4631-2-1","DOIUrl":"https://doi.org/10.1186/1753-4631-2-1","url":null,"abstract":"<p><strong>Background: </strong>Noninvasive recording of movements caused by the heartbeat and the blood circulation is known as ballistocardiography. Several studies have shown the capability of a force plate to detect cardiac activity in the human body. The aim of this paper is to present a new method based on differential geometry of curves to handle multivariate time series obtained by ballistocardiographic force plate measurements.</p><p><strong>Results: </strong>We show that the recoils of the body caused by cardiac motion and blood circulation provide a noninvasive method of displaying the motions of the heart muscle and the propagation of the pulse wave along the aorta and its branches. The results are compared with the data obtained invasively during a cardiac catheterization. We show that the described noninvasive method is able to determine the moment of a particular heart movement or the time when the pulse wave reaches certain morphological structure.</p><p><strong>Conclusions: </strong>Monitoring of heart movements and pulse wave propagation may be used e.g. to estimate the aortic pulse wave velocity, which is widely accepted as an index of aortic stiffness with the application of predicting risk of heart disease in individuals. More extended analysis of the method is however needed to assess its possible clinical application.</p>","PeriodicalId":87480,"journal":{"name":"Nonlinear biomedical physics","volume":"2 1","pages":"1"},"PeriodicalIF":0.0,"publicationDate":"2008-02-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1753-4631-2-1","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"27281782","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Developing combinatorial multi-component therapies (CMCT) of drugs that are more specific and have fewer side effects than traditional one drug therapies.","authors":"Larry S Liebovitch,&nbsp;Nicholas Tsinoremas,&nbsp;Abhijit Pandya","doi":"10.1186/1753-4631-1-11","DOIUrl":"https://doi.org/10.1186/1753-4631-1-11","url":null,"abstract":"<p><p> Drugs designed for a specific target are always found to have multiple effects. Rather than hope that one bullet can be designed to hit only one target, nonlinear interactions across genomic and proteomic networks could be used to design Combinatorial Multi-Component Therapies (CMCT) that are more targeted with fewer side effects. We show here how computational approaches can be used to predict which combinations of drugs would produce the best effects. Using a nonlinear model of how the output effect depends on multiple input drugs, we show that an artificial neural network can accurately predict the effect of all 215 = 32,768 combinations of drug inputs using only the limited data of the output effect of the drugs presented one-at-a-time and pairs-at-a-time.</p>","PeriodicalId":87480,"journal":{"name":"Nonlinear biomedical physics","volume":"1 1","pages":"11"},"PeriodicalIF":0.0,"publicationDate":"2007-08-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1753-4631-1-11","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"27013420","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Reconstruction of cellular variability from spatiotemporal patterns of Dictyostelium discoideum.","authors":"Christiane Hilgardt, Stefan C Müller, Marc-Thorsten Hütt","doi":"10.1186/1753-4631-1-10","DOIUrl":"10.1186/1753-4631-1-10","url":null,"abstract":"<p><p> Variability in cell properties can be an important driving mechanism behind spatiotemporal patterns in biological systems, as the degree of cell-to-cell differences determines the capacity of cells to locally synchronize and, consequently, form patterns on a larger spatial scale. In principle, certain features of spatial patterns emerging with time may be regulated by variability or, more specifically, by certain constellations of cell-to-cell differences. Similarly, measuring variability in a system (i.e. the spatial distribution of cell-cell differences) may help predict properties of later-stage patterns.Here we apply and compare different statistical methods of extracting such systematic cell-to-cell differences in the case of patterns generated with a simple model system of an excitable medium and of experimental data by the slime mold Dictyostelium discoideum. We demonstrate with the help of a correlation analysis that these methods produce systematic (i.e. stationary) results for cell properties. Furthermore, we discuss possible applications of our method, in particular how these cell properties may serve as predictors of certain later-stage patterns.</p>","PeriodicalId":87480,"journal":{"name":"Nonlinear biomedical physics","volume":"1 1","pages":"10"},"PeriodicalIF":0.0,"publicationDate":"2007-08-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2034575/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"27013418","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Methods of electroencephalographic signal analysis for detection of small hidden changes.","authors":"Hiie Hinrikus, Maie Bachmann, Jaan Kalda, Maksim Sakki, Jaanus Lass, Ruth Tomson","doi":"10.1186/1753-4631-1-9","DOIUrl":"10.1186/1753-4631-1-9","url":null,"abstract":"<p><p> The aim of this study was to select and evaluate methods sensitive to reveal small hidden changes in the electroencephalographic (EEG) signal. Two original methods were considered.Multifractal method of scaling analysis of the EEG signal based on the length distribution of low variability periods (LDLVP) was developed and adopted for EEG analysis. The LDLVP method provides a simple route to detecting the multifractal characteristics of a time-series and yields somewhat better temporal resolution than the traditional multifractal analysis.The method of modulation with further integration of energy of the recorded signal was applied for EEG analysis. This method uses integration of differences in energy of the EEG segments with and without stressor.Microwave exposure was used as an external stressor to cause hidden changes in the EEG. Both methods were evaluated on the same EEG database. Database consists of resting EEG recordings of 15 subjects without and with low-level microwave exposure (450 MHz modulated at 40 Hz, power density 0.16 mW/cm2). The significant differences between recordings with and without exposure were detected by the LDLVP method for 4 subjects (26.7%) and energy integration method for 2 subjects (13.3%).The results show that small changes in time variability or energy of the EEG signals hidden in visual inspection can be detected by the LDLVP and integration of differences methods.</p>","PeriodicalId":87480,"journal":{"name":"Nonlinear biomedical physics","volume":"1 1","pages":"9"},"PeriodicalIF":0.0,"publicationDate":"2007-07-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2000871/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"27013417","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Estimating the distribution of dynamic invariants: illustrated with an application to human photo-plethysmographic time series.","authors":"Michael Small","doi":"10.1186/1753-4631-1-8","DOIUrl":"https://doi.org/10.1186/1753-4631-1-8","url":null,"abstract":"<p><p> Dynamic invariants are often estimated from experimental time series with the aim of differentiating between different physical states in the underlying system. The most popular schemes for estimating dynamic invariants are capable of estimating confidence intervals, however, such confidence intervals do not reflect variability in the underlying dynamics. We propose a surrogate based method to estimate the expected distribution of values under the null hypothesis that the underlying deterministic dynamics are stationary. We demonstrate the application of this method by considering four recordings of human pulse waveforms in differing physiological states and show that correlation dimension and entropy are insufficient to differentiate between these states. In contrast, algorithmic complexity can clearly differentiate between all four rhythms.</p>","PeriodicalId":87480,"journal":{"name":"Nonlinear biomedical physics","volume":"1 1","pages":"8"},"PeriodicalIF":0.0,"publicationDate":"2007-07-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1753-4631-1-8","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"27021398","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Bioactive peptide design using the Resonant Recognition Model.","authors":"Irena Cosic,&nbsp;Elena Pirogova","doi":"10.1186/1753-4631-1-7","DOIUrl":"https://doi.org/10.1186/1753-4631-1-7","url":null,"abstract":"<p><p> With a large number of DNA and protein sequences already known, the crucial question is to find out how the biological function of these macromolecules is \"written\" in the sequence of nucleotides or amino acids. Biological processes in any living organism are based on selective interactions between particular bio-molecules, mostly proteins. The rules governing the coding of a protein's biological function, i.e. its ability to selectively interact with other molecules, are still not elucidated. In addition, with the rapid accumulation of databases of protein primary structures, there is an urgent need for theoretical approaches that are capable of analysing protein structure-function relationships. The Resonant Recognition Model (RRM) 12 is one attempt to identify the selectivity of protein interactions within the amino acid sequence. The RRM 12 is a physico-mathematical approach that interprets protein sequence linear information using digital signal processing methods. In the RRM the protein primary structure is represented as a numerical series by assigning to each amino acid in the sequence a physical parameter value relevant to the protein's biological activity. The RRM concept is based on the finding that there is a significant correlation between spectra of the numerical presentation of amino acids and their biological activity. Once the characteristic frequency for a particular protein function/interaction is identified, it is possible then to utilize the RRM approach to predict the amino acids in the protein sequence, which predominantly contribute to this frequency and thus, to the observed function, as well as to design de novo peptides having the desired periodicities. As was shown in our previous studies of fibroblast growth factor (FGF) peptidic antagonists 23 and human immunodeficiency virus (HIV) envelope agonists 24, such de novo designed peptides express desired biological function. This study utilises the RRM computational approach to the analysis of oncogene and proto-oncogene proteins. The results obtained have shown that the RRM is capable of identifying the differences between the oncogenic and proto-oncogenic proteins with the possibility of identifying the \"cancer-causing\" features within their protein primary structure. In addition, the rational design of bioactive peptide analogues displaying oncogenic or proto-oncogenic-like activity is presented here.</p>","PeriodicalId":87480,"journal":{"name":"Nonlinear biomedical physics","volume":"1 1","pages":"7"},"PeriodicalIF":0.0,"publicationDate":"2007-07-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1753-4631-1-7","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"27021391","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}