Nonlinear biomedical physics最新文献

{"title":"Influence of the distensibility of large arteries on the longitudinal impedance: application for the development of non-invasive techniques to the diagnosis of arterial diseases.","authors":"Wassila Sahtout, Ridha Ben Salah","doi":"10.1186/1753-4631-6-2","DOIUrl":"10.1186/1753-4631-6-2","url":null,"abstract":"<p><strong>Background: </strong>This study shows that the arterial longitudinal impedance constitutes a hemodynamic parameter of interest for performance characterization of large arteries in normal condition as well as in pathological situations. For this purpose, we solved the Navier-Stokes equations for an incompressible flow using the finite element analysis method and the Arbitrary Lagrangian Eulerian (ALE) formulation. The mathematical model assumes a two-dimensional flow and takes into account the nonlinear terms in the equations of fluid motion that express the convective acceleration, as well as the nonlinear deformation of the arterial wall. Several numerical simulations of the blood flow in large vessels have been performed to study the propagation along an arterial vessel of a pressure gradient pulse and a rate flow pulse. These simulations include various deformations of the wall artery leading to parietal displacements ranging from 0 (rigid wall) to 15% (very elastic wall) in order to consider physiological and pathological cases.</p><p><strong>Results: </strong>The results show significant changes of the rate flow and the pressure gradient wave as a function of aosc, the relative variation in the radius of the artery over a cardiac cycle. These changes are notable beyond a critical value of aosc equal to 0.05. This critical value is also found in the evolution of the longitudinal impedance. So, above a variation of radius of 5%, the convective acceleration, created by the fluid-wall interactions, have an influence on the flow detectable on the longitudinal impedance.</p><p><strong>Conclusions: </strong>The interpretation of the evolution of the longitudinal impedance shows that it could be a mean to test the performance of large arteries and can contribute to the diagnosis of parietal lesions of large arteries. For a blood vessel with a wall displacement higher than 5% similar to those of large arteries like the aorta, the longitudinal impedance is substantially greater than that obtained in the absence of wall displacement. This study also explains the effects of convective acceleration, on the shape of the decline of the pressure gradient wave and shows that they should not be neglected when the variation in radius is greater than 5%.</p>","PeriodicalId":87480,"journal":{"name":"Nonlinear biomedical physics","volume":"6 1","pages":"2"},"PeriodicalIF":0.0,"publicationDate":"2012-04-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3442960/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"30578686","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Fractional modeling dynamics of HIV and CD4+ T-cells during primary infection.","authors":"Aam Arafa,&nbsp;Sz Rida,&nbsp;M Khalil","doi":"10.1186/1753-4631-6-1","DOIUrl":"https://doi.org/10.1186/1753-4631-6-1","url":null,"abstract":"<p><p> In this paper, we introduce fractional-order into a model of HIV-1 infection of CD4+ T cells. We study the effect of the changing the average number of viral particles N with different sets of initial conditions on the dynamics of the presented model. Generalized Euler method (GEM) will be used to find a numerical solution of the HIV-1 infection fractional order model.</p>","PeriodicalId":87480,"journal":{"name":"Nonlinear biomedical physics","volume":"6 1","pages":"1"},"PeriodicalIF":0.0,"publicationDate":"2012-01-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1753-4631-6-1","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"30361549","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Nonlinear changes in the activity of the oxygen-dependent demethylase system in Rhodococcus erythropolis cells in the presence of low and very low doses of formaldehyde.","authors":"Elżbieta Malarczyk,&nbsp;Marzanna Pazdzioch-Czochra,&nbsp;Marcin Grąz,&nbsp;Janina Kochmańska-Rdest,&nbsp;Anna Jarosz-Wilkołazka","doi":"10.1186/1753-4631-5-9","DOIUrl":"https://doi.org/10.1186/1753-4631-5-9","url":null,"abstract":"<p><p> The effect of exogenous, highly diluted formaldehyde on the rate of demethylation/re-methylation of veratric acid by the bacteria Rhodococcus erythropolis was studied using electrophoretic and microscopic techniques. The activity of 4-O-demethylase, responsible for accumulation of vanillic acid, and the levels of veratric and vanillic acids were determined using capillary electrophoresis. Formaldehyde was serially diluted at 1:100 ratios, and the total number of iterations was 20. After incubation of the successive dilutions of formaldehyde with the bacteria, demethylase activity oscillated in a sinusoidal manner. It was established using capillary electrophoresis that methylation of vanillic acid to veratric acid occurred at a double rate, as shown by the doubled fluctuation in the concentration of veratrate. There were also changes in the NADH oxidase activity, which is associated with methylation processes. Microscopic observations revealed the presence of numerous enlarged vacuoles in bacterial cells during the accumulation of large amounts of vanillic acid, and their disappearance together with a decrease in 4-O-demethylase activity. The presented results give evidence for the ability of living cells to detect the presence of submolecular concentrations of biological effectors in their environment and provide a basis for a scientific explanation of the law of hormesis and the therapeutic effect of homeopathic dilutions.</p>","PeriodicalId":87480,"journal":{"name":"Nonlinear biomedical physics","volume":"5 1","pages":"9"},"PeriodicalIF":0.0,"publicationDate":"2011-11-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1753-4631-5-9","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"30271826","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Entrainment of marginally stable excitation waves by spatially extended sub-threshold periodic forcing.","authors":"Joseph M Starobin,&nbsp;Vivek Varadarajan","doi":"10.1186/1753-4631-5-8","DOIUrl":"https://doi.org/10.1186/1753-4631-5-8","url":null,"abstract":"<p><p> We introduce a novel approach of stabilizing the dynamics of excitation waves by spatially extended sub-threshold periodic forcing. Entrainment of unstable primary waves has been studied numerically for different amplitudes and frequencies of additional sub-threshold stimuli. We determined entrainment regimes under which excitation blocks were transformed into consistent 1:1 responses. These responses were spatially homogeneous and synchronized in the entire excitable medium. Compared to primary pulses, pulses entrained by secondary stimulations were stable at considerably shorter periods which decreased at higher amplitudes and greater number of secondary stimuli. Our results suggest a practical methodology for stabilization of excitation in reaction-diffusion media such as nerve tissue with regions of reduced excitability.</p>","PeriodicalId":87480,"journal":{"name":"Nonlinear biomedical physics","volume":"5 1","pages":"8"},"PeriodicalIF":0.0,"publicationDate":"2011-09-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1753-4631-5-8","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"30163313","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Econobiophysics - game of choosing. Model of selection or election process with diverse accessible information.","authors":"Wlodzimierz Klonowski,&nbsp;Michal Pierzchalski,&nbsp;Pawel Stepien,&nbsp;Robert A Stepien","doi":"10.1186/1753-4631-5-7","DOIUrl":"https://doi.org/10.1186/1753-4631-5-7","url":null,"abstract":"<p><p> We propose several models applicable to both selection and election processes when each selecting or electing subject has access to different information about the objects to choose from. We wrote special software to simulate these processes. We consider both the cases when the environment is neutral (natural process) as well as when the environment is involved (controlled process).</p>","PeriodicalId":87480,"journal":{"name":"Nonlinear biomedical physics","volume":"5 1","pages":"7"},"PeriodicalIF":0.0,"publicationDate":"2011-09-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1753-4631-5-7","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"30120602","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"On multi-strain model for Hepatitis C.","authors":"E Ahmed, Ha El-Saka","doi":"10.1186/1753-4631-5-6","DOIUrl":"10.1186/1753-4631-5-6","url":null,"abstract":"<p><p> In this paper we present a multi-strain model for hepatitis C virus (HCV) including an immune response term. The model is presented and discussed. Also we argue that the added multi-strain term represents some basic properties of the immune system and that it should be included to study longer term behavior of the disease.</p>","PeriodicalId":87480,"journal":{"name":"Nonlinear biomedical physics","volume":"5 ","pages":"6"},"PeriodicalIF":0.0,"publicationDate":"2011-08-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3726404/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"30052107","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Discriminating between ADHD adults and controls using independent ERP components and a support vector machine: a validation study.","authors":"Andreas Mueller,&nbsp;Gian Candrian,&nbsp;Venke Arntsberg Grane,&nbsp;Juri D Kropotov,&nbsp;Valery A Ponomarev,&nbsp;Gian-Marco Baschera","doi":"10.1186/1753-4631-5-5","DOIUrl":"10.1186/1753-4631-5-5","url":null,"abstract":"<p><strong>Background: </strong>There are numerous event-related potential (ERP) studies in relation to attention-deficit hyperactivity disorder (ADHD), and a substantial number of ERP correlates of the disorder have been identified. However, most of the studies are limited to group differences in children. Independent component analysis (ICA) separates a set of mixed event-related potentials into a corresponding set of statistically independent source signals, which are likely to represent different functional processes. Using a support vector machine (SVM), a classification method originating from machine learning, this study aimed at investigating the use of such independent ERP components in differentiating adult ADHD patients from non-clinical controls by selecting a most informative feature set. A second aim was to validate the predictive power of the SVM classifier by means of an independent ADHD sample recruited at a different laboratory.</p><p><strong>Methods: </strong>Two groups of age-matched adults (75 ADHD, 75 controls) performed a visual two stimulus go/no-go task. ERP responses were decomposed into independent components, and a selected set of independent ERP component features was used for SVM classification.</p><p><strong>Results: </strong>Using a 10-fold cross-validation approach, classification accuracy was 91%. Predictive power of the SVM classifier was verified on the basis of the independent ADHD sample (17 ADHD patients), resulting in a classification accuracy of 94%. The latency and amplitude measures which in combination differentiated best between ADHD patients and non-clinical subjects primarily originated from independent components associated with inhibitory and other executive operations.</p><p><strong>Conclusions: </strong>This study shows that ERPs can substantially contribute to the diagnosis of ADHD when combined with up-to-date methods.</p>","PeriodicalId":87480,"journal":{"name":"Nonlinear biomedical physics","volume":"5 ","pages":"5"},"PeriodicalIF":0.0,"publicationDate":"2011-07-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1753-4631-5-5","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"30017376","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Evidence of a pharmacodynamic EEG profile in rats following clonidine administration using a nonlinear analysis.","authors":"David-Olivier D Azulay,&nbsp;Benjamin Renoux,&nbsp;Magnus Ivarsson","doi":"10.1186/1753-4631-5-4","DOIUrl":"https://doi.org/10.1186/1753-4631-5-4","url":null,"abstract":"<p><strong>Background: </strong>Changes caused by clonidine in rodent electroencephalograms (EEG) have been reported with some inconsistency. For this reason, a pre-clinical study was conducted in order to confirm previous findings with both a standard spectral analysis and a sleep stage scoring procedure. In addition, a nonlinear technique for analysing the time-varying signals was implemented to compare its performance against conventional approaches.</p><p><strong>Results: </strong>The nonlinear method succeeds in quantifying all dose-related responses from the data set relying solely on the EEG trace.</p><p><strong>Conclusions: </strong>Nonlinear approaches can deliver a suitable alternative to the sleep-stage scoring methods commonly used for drug effect detection.</p>","PeriodicalId":87480,"journal":{"name":"Nonlinear biomedical physics","volume":"5 1","pages":"4"},"PeriodicalIF":0.0,"publicationDate":"2011-06-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1753-4631-5-4","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"30263489","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"New method for analysis of nonstationary signals.","authors":"Robert A Stepien","doi":"10.1186/1753-4631-5-3","DOIUrl":"https://doi.org/10.1186/1753-4631-5-3","url":null,"abstract":"<p><strong>Background: </strong>Analysis of signals by means of symbolic methods consists in calculating a measure of signal complexity, for example informational entropy or Lempel-Ziv algorithmic complexity. For construction of these entropic measures one uses distributions of symbols representing the analyzed signal.</p><p><strong>Results: </strong>We introduce a new signal characteristic named sequential spectrum that is suitable for analysis of the wide group of signals, including biosignals.The paper contains a brief review of analyses of artificial signals showing features similar to those of biosignals. An example of using sequential spectrum for analyzing EEG signals registered during different stages of sleep is also presented.</p><p><strong>Conclusions: </strong>Sequential spectrum is an effective tool for general description of nonstationary signals and it its advantage over Fourier spectrum. Sequential spectrum enables assessment of pathological changes in EEG-signals recorded in persons with epilepsy.</p>","PeriodicalId":87480,"journal":{"name":"Nonlinear biomedical physics","volume":"5 ","pages":"3"},"PeriodicalIF":0.0,"publicationDate":"2011-06-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1753-4631-5-3","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"29955611","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Characterizing Deep Brain Stimulation effects in computationally efficient neural network models.","authors":"Alberta Latteri,&nbsp;Paolo Arena,&nbsp;Paolo Mazzone","doi":"10.1186/1753-4631-5-2","DOIUrl":"https://doi.org/10.1186/1753-4631-5-2","url":null,"abstract":"<p><strong>Background: </strong>Recent studies on the medical treatment of Parkinson's disease (PD) led to the introduction of the so called Deep Brain Stimulation (DBS) technique. This particular therapy allows to contrast actively the pathological activity of various Deep Brain structures, responsible for the well known PD symptoms. This technique, frequently joined to dopaminergic drugs administration, replaces the surgical interventions implemented to contrast the activity of specific brain nuclei, called Basal Ganglia (BG). This clinical protocol gave the possibility to analyse and inspect signals measured from the electrodes implanted into the deep brain regions. The analysis of these signals led to the possibility to study the PD as a specific case of dynamical synchronization in biological neural networks, with the advantage to apply the theoretical analysis developed in such scientific field to find efficient treatments to face with this important disease. Experimental results in fact show that the PD neurological diseases are characterized by a pathological signal synchronization in BG. Parkinsonian tremor, for example, is ascribed to be caused by neuron populations of the Thalamic and Striatal structures that undergo an abnormal synchronization. On the contrary, in normal conditions, the activity of the same neuron populations do not appear to be correlated and synchronized.</p><p><strong>Results: </strong>To study in details the effect of the stimulation signal on a pathological neural medium, efficient models of these neural structures were built, which are able to show, without any external input, the intrinsic properties of a pathological neural tissue, mimicking the BG synchronized dynamics.We start considering a model already introduced in the literature to investigate the effects of electrical stimulation on pathologically synchronized clusters of neurons. This model used Morris Lecar type neurons. This neuron model, although having a high level of biological plausibility, requires a large computational effort to simulate large scale networks. For this reason we considered a reduced order model, the Izhikevich one, which is computationally much lighter. The comparison between neural lattices built using both neuron models provided comparable results, both without traditional stimulation and in presence of all the stimulation protocols. This was a first result toward the study and simulation of the large scale neural networks involved in pathological dynamics.Using the reduced order model an inspection on the activity of two neural lattices was also carried out at the aim to analyze how the stimulation in one area could affect the dynamics in another area, like the usual medical treatment protocols require.The study of population dynamics that was carried out allowed us to investigate, through simulations, the positive effects of the stimulation signals in terms of desynchronization of the neural dynamics.</p><p><strong>Conclusio","PeriodicalId":87480,"journal":{"name":"Nonlinear biomedical physics","volume":"5 1","pages":"2"},"PeriodicalIF":0.0,"publicationDate":"2011-04-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1753-4631-5-2","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"29818672","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}