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Annual review of phytopathology最新文献

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Key Insights and Research Prospects at the Dawn of the Population Genomics Era for Verticillium dahliae. 大丽花黄萎病种群基因组学时代来临之际的关键见解和研究前景。
IF 10.2 1区 农林科学
Annual review of phytopathology Pub Date : 2021-08-25 Epub Date: 2021-04-23 DOI: 10.1146/annurev-phyto-020620-121925
Jie-Yin Chen, Steven J Klosterman, Xiao-Ping Hu, Xiao-Feng Dai, Krishna V Subbarao
{"title":"Key Insights and Research Prospects at the Dawn of the Population Genomics Era for <i>Verticillium dahliae</i>.","authors":"Jie-Yin Chen,&nbsp;Steven J Klosterman,&nbsp;Xiao-Ping Hu,&nbsp;Xiao-Feng Dai,&nbsp;Krishna V Subbarao","doi":"10.1146/annurev-phyto-020620-121925","DOIUrl":"https://doi.org/10.1146/annurev-phyto-020620-121925","url":null,"abstract":"<p><p>The genomics era has ushered in exciting possibilities to examine the genetic bases that undergird the characteristic features of <i>Verticillium dahliae</i> and other plant pathogens. In this review, we provide historical perspectives on some of the salient biological characteristics of <i>V. dahliae</i>, including its morphology, microsclerotia formation, host range, disease symptoms, vascular niche, reproduction, and population structure. The kaleidoscopic population structure of this pathogen is summarized, including different races of the pathogen, defoliating and nondefoliating phenotypes, vegetative compatibility groupings, and clonal populations. Where possible, we place the characteristic differences in the context of comparative and functional genomics analyses that have offered insights into population divergence within <i>V. dahliae</i> and the related species.Current challenges are highlighted along with some suggested future population genomics studies that will contribute to advancing our understanding of the population divergence in <i>V. dahliae</i>.</p>","PeriodicalId":8251,"journal":{"name":"Annual review of phytopathology","volume":"59 ","pages":"31-51"},"PeriodicalIF":10.2,"publicationDate":"2021-08-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38823448","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 12
Research Advances in Potyviruses: From the Laboratory Bench to the Field. 波蒂病毒的研究进展:从实验室工作台到现场。
IF 10.2 1区 农林科学
Annual review of phytopathology Pub Date : 2021-08-25 Epub Date: 2021-04-23 DOI: 10.1146/annurev-phyto-020620-114550
Xiuling Yang, Yinzi Li, Aiming Wang
{"title":"Research Advances in Potyviruses: From the Laboratory Bench to the Field.","authors":"Xiuling Yang,&nbsp;Yinzi Li,&nbsp;Aiming Wang","doi":"10.1146/annurev-phyto-020620-114550","DOIUrl":"https://doi.org/10.1146/annurev-phyto-020620-114550","url":null,"abstract":"<p><p>Potyviruses (viruses in the genus <i>Potyvirus</i>, family <i>Potyviridae</i>) constitute the largest group of known plant-infecting RNA viruses and include many agriculturally important viruses that cause devastating epidemics and significant yield losses in many crops worldwide. Several potyviruses are recognized as the most economically important viral pathogens. Therefore, potyviruses are more studied than other groups of plant viruses. In the past decade, a large amount of knowledge has been generated to better understand potyviruses and their infection process. In this review, we list the top 10 economically important potyviruses and present a brief profile of each. We highlight recent exciting findings on the novel genome expression strategy and the biological functions of potyviral proteins and discuss recent advances in molecular plant-potyvirus interactions, particularly regarding the coevolutionary arms race. Finally, we summarize current disease control strategies, with a focus on biotechnology-based genetic resistance, and point out future research directions.</p>","PeriodicalId":8251,"journal":{"name":"Annual review of phytopathology","volume":"59 ","pages":"1-29"},"PeriodicalIF":10.2,"publicationDate":"2021-08-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38902404","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 55
Genetic Dissection of the Erwinia amylovora Disease Cycle. 淀粉状欧文菌病循环的遗传解剖。
IF 10.2 1区 农林科学
Annual review of phytopathology Pub Date : 2021-08-25 Epub Date: 2021-05-04 DOI: 10.1146/annurev-phyto-020620-095540
Roshni R Kharadi, Jeffrey K Schachterle, Xiaochen Yuan, Luisa F Castiblanco, Jingyu Peng, Suzanne M Slack, Quan Zeng, George W Sundin
{"title":"Genetic Dissection of the <i>Erwinia amylovora</i> Disease Cycle.","authors":"Roshni R Kharadi,&nbsp;Jeffrey K Schachterle,&nbsp;Xiaochen Yuan,&nbsp;Luisa F Castiblanco,&nbsp;Jingyu Peng,&nbsp;Suzanne M Slack,&nbsp;Quan Zeng,&nbsp;George W Sundin","doi":"10.1146/annurev-phyto-020620-095540","DOIUrl":"https://doi.org/10.1146/annurev-phyto-020620-095540","url":null,"abstract":"<p><p>Fire blight, caused by the bacterial phytopathogen <i>Erwinia amylovora</i>, is an economically important and mechanistically complex disease that affects apple and pear production in most geographic production hubs worldwide. We compile, assess, and present a genetic outlook on the progression of an <i>E. amylovora</i> infection in the host. We discuss the key aspects of type III secretion-mediated infection and systemic movement, biofilm formation in xylem, and pathogen dispersal via ooze droplets, a concentrated suspension of bacteria and exopolysaccharide components. We present an overall outlook on the genetic elements contributing to <i>E. amylovora</i> pathogenesis, including an exploration of the impact of floral microbiomes on <i>E. amylovora</i> colonization, and summarize the current knowledge of host responses to an incursion and how this response stimulates further infection and systemic spread. We hope to facilitate the identification of new, unexplored areas of research in this pathosystem that can help identify evolutionarily susceptible genetic targets to ultimately aid in the design of sustainable strategies for fire blight disease mitigation.</p>","PeriodicalId":8251,"journal":{"name":"Annual review of phytopathology","volume":"59 ","pages":"191-212"},"PeriodicalIF":10.2,"publicationDate":"2021-08-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38947494","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 16
Host Adaptation and Virulence in Heteroecious Rust Fungi. 异种锈菌的寄主适应性和毒力。
IF 10.2 1区 农林科学
Annual review of phytopathology Pub Date : 2021-08-25 Epub Date: 2021-06-02 DOI: 10.1146/annurev-phyto-020620-121149
Sebastien Duplessis, Cecile Lorrain, Benjamin Petre, Melania Figueroa, Peter N Dodds, M Catherine Aime
{"title":"Host Adaptation and Virulence in Heteroecious Rust Fungi.","authors":"Sebastien Duplessis,&nbsp;Cecile Lorrain,&nbsp;Benjamin Petre,&nbsp;Melania Figueroa,&nbsp;Peter N Dodds,&nbsp;M Catherine Aime","doi":"10.1146/annurev-phyto-020620-121149","DOIUrl":"https://doi.org/10.1146/annurev-phyto-020620-121149","url":null,"abstract":"<p><p>Rust fungi (Pucciniales, Basidiomycota) are obligate biotrophic pathogens that cause rust diseases in plants, inflicting severe damage to agricultural crops. Pucciniales possess the most complex life cycles known in fungi. These include an alternation of generations, the development of up to five different sporulating stages, and, for many species, the requirement of infecting two unrelated host plants during different parts of their life cycle, termed heteroecism. These fungi have been extensively studied in the past century through microscopy and inoculation studies, providing precise descriptions of their infection processes, although the molecular mechanisms underlying their unique biology are poorly understood. In this review, we cover recent genomic and life cycle transcriptomic studies in several heteroecious rust species, which provide insights into the genetic tool kits associated with host adaptation and virulence, opening new avenues for unraveling their unique evolution.</p>","PeriodicalId":8251,"journal":{"name":"Annual review of phytopathology","volume":"59 ","pages":"403-422"},"PeriodicalIF":10.2,"publicationDate":"2021-08-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39053775","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 25
Rice stripe virus: Exploring Molecular Weapons in the Arsenal of a Negative-Sense RNA Virus. 水稻条纹病毒:探索负义RNA病毒库中的分子武器。
IF 10.2 1区 农林科学
Annual review of phytopathology Pub Date : 2021-08-25 Epub Date: 2021-06-02 DOI: 10.1146/annurev-phyto-020620-113020
Yi Xu, Shuai Fu, Xiaorong Tao, Xueping Zhou
{"title":"<i>Rice stripe virus</i>: Exploring Molecular Weapons in the Arsenal of a Negative-Sense RNA Virus.","authors":"Yi Xu,&nbsp;Shuai Fu,&nbsp;Xiaorong Tao,&nbsp;Xueping Zhou","doi":"10.1146/annurev-phyto-020620-113020","DOIUrl":"https://doi.org/10.1146/annurev-phyto-020620-113020","url":null,"abstract":"<p><p>Rice stripe disease caused by <i>Rice stripe virus</i> (RSV) is one of the most devastating plant viruses of rice and causes enormous losses in production. RSV is transmitted from plant to plant by the small brown planthopper (<i>Laodelphax striatellus</i>) in a circulative-propagative manner. The recent reemergence of this pathogen in East Asia since 2000 has made RSV one of the most studied plant viruses over the past two decades. Extensive studies of RSV have resulted in substantial advances regarding fundamental aspects of the virus infection. Here, we compile and analyze recent information on RSV with a special emphasis on the strategies that RSV has adopted to establish infections. These advances include RSV replication and movement in host plants and the small brown planthopper vector, innate immunity defenses against RSV infection, epidemiology, and recent advances in the management of rice stripe disease. Understanding these issues will facilitate the design of novel antiviral therapies for management and contribute to a more detailed understanding of negative-sense virus-host interactions at the molecular level.</p>","PeriodicalId":8251,"journal":{"name":"Annual review of phytopathology","volume":"59 ","pages":"351-371"},"PeriodicalIF":10.2,"publicationDate":"2021-08-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39054319","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 32
An Emerging Role for Chloroplasts in Disease and Defense. 叶绿体在疾病和防御中的新作用。
IF 10.2 1区 农林科学
Annual review of phytopathology Pub Date : 2021-08-25 DOI: 10.1146/annurev-phyto-020620-115813
Pradeep Kachroo, Tessa M Burch-Smith, Murray Grant
{"title":"An Emerging Role for Chloroplasts in Disease and Defense.","authors":"Pradeep Kachroo,&nbsp;Tessa M Burch-Smith,&nbsp;Murray Grant","doi":"10.1146/annurev-phyto-020620-115813","DOIUrl":"https://doi.org/10.1146/annurev-phyto-020620-115813","url":null,"abstract":"<p><p>Chloroplasts are key players in plant immune signaling, contributing to not only de novo synthesis of defensive phytohormones but also the generation of reactive oxygen and nitrogen species following activation of pattern recognition receptors or resistance (R) proteins. The local hypersensitive response (HR) elicited by R proteins is underpinned by chloroplast-generated reactive oxygen species. HR-induced lipid peroxidation generates important chloroplast-derived signaling lipids essential to the establishment of systemic immunity. As a consequence of this pivotal role in immunity, pathogens deploy effector complements that directly or indirectly target chloroplasts to attenuate chloroplast immunity (CI). Our review summarizes the current knowledge of CI signaling and highlights common pathogen chloroplast targets and virulence strategies. We address emerging insights into chloroplast retrograde signaling in immune responses and gaps in our knowledge, including the importance of understanding chloroplast heterogeneity and chloroplast involvement in intraorganellular interactions in host immunity.</p>","PeriodicalId":8251,"journal":{"name":"Annual review of phytopathology","volume":"59 ","pages":"423-445"},"PeriodicalIF":10.2,"publicationDate":"2021-08-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39357271","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 20
One Hundred Years of Hybrid Necrosis: Hybrid Autoimmunity as a Window into the Mechanisms and Evolution of Plant-Pathogen Interactions. 杂交坏死的一百年:杂交自身免疫作为植物-病原体相互作用机制和进化的窗口。
IF 10.2 1区 农林科学
Annual review of phytopathology Pub Date : 2021-08-25 Epub Date: 2021-05-04 DOI: 10.1146/annurev-phyto-020620-114826
Lei Li, Detlef Weigel
{"title":"One Hundred Years of Hybrid Necrosis: Hybrid Autoimmunity as a Window into the Mechanisms and Evolution of Plant-Pathogen Interactions.","authors":"Lei Li,&nbsp;Detlef Weigel","doi":"10.1146/annurev-phyto-020620-114826","DOIUrl":"https://doi.org/10.1146/annurev-phyto-020620-114826","url":null,"abstract":"<p><p>Hybrid necrosis in plants refers to a genetic autoimmunity syndrome in the progeny of interspecific or intraspecific crosses. Although the phenomenon was first documented in 1920, it has been unequivocally linked to autoimmunity only recently, with the discovery of the underlying genetic and biochemical mechanisms. The most common causal loci encode immune receptors, which are known to differ within and between species. One mechanism can be explained by the guard hypothesis, in which a guard protein, often a nucleotide-binding site-leucine-rich repeat protein, is activated by interaction with a plant protein that mimics standard guardees modified by pathogen effector proteins. Another surprising mechanism is the formation of inappropriately active immune receptor complexes. In this review, we summarize our current knowledge of hybrid necrosis and discuss how its study is not only informing the understanding of immune gene evolution but also revealing new aspects of plant immune signaling.</p>","PeriodicalId":8251,"journal":{"name":"Annual review of phytopathology","volume":"59 ","pages":"213-237"},"PeriodicalIF":10.2,"publicationDate":"2021-08-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38947493","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 15
Origins and Immunity Networking Functions of EDS1 Family Proteins. EDS1家族蛋白的起源和免疫网络功能
IF 10.2 1区 农林科学
Annual review of phytopathology Pub Date : 2020-08-25 Epub Date: 2020-05-12 DOI: 10.1146/annurev-phyto-010820-012840
Dmitry Lapin, Deepak D Bhandari, Jane E Parker
{"title":"Origins and Immunity Networking Functions of EDS1 Family Proteins.","authors":"Dmitry Lapin,&nbsp;Deepak D Bhandari,&nbsp;Jane E Parker","doi":"10.1146/annurev-phyto-010820-012840","DOIUrl":"https://doi.org/10.1146/annurev-phyto-010820-012840","url":null,"abstract":"<p><p>The EDS1 family of structurally unique lipase-like proteins EDS1, SAG101, and PAD4 evolved in seed plants, on top of existing phytohormone and nucleotide-binding-leucine-rich-repeat (NLR) networks, to regulate immunity pathways against host-adapted biotrophic pathogens. Exclusive heterodimers between EDS1 and SAG101 or PAD4 create essential surfaces for resistance signaling. Phylogenomic information, together with functional studies in <i>Arabidopsis</i> and tobacco, identify a coevolved module between the EDS1-SAG101 heterodimer and coiled-coil (CC) HET-S and LOP-B (CC<sub>HELO</sub>) domain helper NLRs that is recruited by intracellular Toll-interleukin1-receptor (TIR) domain NLR receptors to confer host cell death and pathogen immunity. EDS1-PAD4 heterodimers have a different and broader activity in basal immunity that transcriptionally reinforces local and systemic defenses triggered by various NLRs. Here, we consider EDS1 family protein functions across seed plant lineages in the context of networking with receptor and helper NLRs and downstream resistance machineries. The different modes of action and pathway connectivities of EDS1 family members go some way to explaining their central role in biotic stress resilience.</p>","PeriodicalId":8251,"journal":{"name":"Annual review of phytopathology","volume":"58 ","pages":"253-276"},"PeriodicalIF":10.2,"publicationDate":"2020-08-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1146/annurev-phyto-010820-012840","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37926498","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 90
Progress in Biological Control of Weeds with Plant Pathogens. 植物病原杂草生物防治研究进展。
IF 10.2 1区 农林科学
Annual review of phytopathology Pub Date : 2020-08-25 Epub Date: 2020-05-08 DOI: 10.1146/annurev-phyto-010820-012823
Louise Morin
{"title":"Progress in Biological Control of Weeds with Plant Pathogens.","authors":"Louise Morin","doi":"10.1146/annurev-phyto-010820-012823","DOIUrl":"https://doi.org/10.1146/annurev-phyto-010820-012823","url":null,"abstract":"<p><p>Plant pathogens have played an important role in weed biological control since the 1970s. So far, 36 fungal pathogens have been authorized for introduction across 18 countries for the classical biological control of weeds. Their safety record has been excellent, but questions continue to be asked about the risk that they could transfer to other plants. Quantitative data documenting their impact on the weed populations are still limited. Of the 15 bioherbicides based on living microorganisms that have ever been registered, only two were commercially available at the time of this review. The development and commercialization of bioherbicides in affluent countries are still plagued by technological hurdles and limited market potential. Not-for-profit small-scale production and distribution systems for bioherbicides in low-income countries may have potential as an inexpensive approach to controlling pervasive weeds. The types of research underpinning biological control approaches and challenges encountered are highlighted using specific examples.</p>","PeriodicalId":8251,"journal":{"name":"Annual review of phytopathology","volume":"58 ","pages":"201-223"},"PeriodicalIF":10.2,"publicationDate":"2020-08-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1146/annurev-phyto-010820-012823","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37916309","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 44
Epigenetic Mechanisms in Nematode-Plant Interactions. 线虫与植物相互作用的表观遗传机制。
IF 10.2 1区 农林科学
Annual review of phytopathology Pub Date : 2020-08-25 Epub Date: 2020-05-15 DOI: 10.1146/annurev-phyto-010820-012805
Tarek Hewezi
{"title":"Epigenetic Mechanisms in Nematode-Plant Interactions.","authors":"Tarek Hewezi","doi":"10.1146/annurev-phyto-010820-012805","DOIUrl":"https://doi.org/10.1146/annurev-phyto-010820-012805","url":null,"abstract":"<p><p>Epigenetic mechanisms play fundamental roles in regulating numerous biological processes in various developmental and environmental contexts. Three highly interconnected epigenetic control mechanisms, including small noncoding RNAs, DNA methylation, and histone modifications, contribute to the establishment of plant epigenetic profiles. During the past decade, a growing body of experimental work has revealed the intricate, diverse, and dynamic roles that epigenetic modifications play in plant-nematode interactions. In this review, I summarize recent progress regarding the functions of small RNAs in mediating plant responses to infection by cyst and root-knot nematodes, with a focus on the functions of microRNAs. I also recapitulate recent advances in genome-wide DNA methylation analysis and discuss how cyst nematodes induce extensive and dynamic changes in the plant methylome that impact the transcriptional activity of genes and transposable elements. Finally, the potential role of nematode effector proteins in triggering such epigenome changes is discussed.</p>","PeriodicalId":8251,"journal":{"name":"Annual review of phytopathology","volume":"58 ","pages":"119-138"},"PeriodicalIF":10.2,"publicationDate":"2020-08-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1146/annurev-phyto-010820-012805","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37939602","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 19
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